Wall clock time and date at job start Tue Mar 31 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48501 * 109.46922 * 269.71922 * 3 2 1 5 5 H 1.48496 * 109.47354 * 29.72118 * 3 2 1 6 6 H 1.48501 * 109.47428 * 149.72226 * 3 2 1 7 7 C 1.38955 * 119.99820 * 179.71718 * 2 1 3 8 8 H 1.07999 * 120.00192 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99362 * 180.02562 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47124 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00021 * 179.97438 * 13 12 10 15 15 O 1.21285 * 119.99795 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00162 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.46701 * 300.00090 * 16 14 13 18 18 C 1.53000 * 109.47061 * 59.99512 * 16 14 13 19 19 C 1.53006 * 109.46673 * 120.00475 * 18 16 14 20 20 C 1.53003 * 109.47309 * 59.99729 * 19 18 16 21 21 C 1.52997 * 109.47123 * 300.00185 * 20 19 18 22 22 C 1.52992 * 109.47156 * 180.02562 * 16 14 13 23 23 C 1.53000 * 109.47194 * 299.99561 * 22 16 14 24 24 C 1.53002 * 109.47418 * 300.00454 * 23 22 16 25 25 H 0.97000 * 120.00377 * 0.27775 * 1 2 3 26 26 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 27 27 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 28 28 H 1.09005 * 109.47238 * 59.99845 * 12 10 9 29 29 H 0.97000 * 119.99743 * 0.02562 * 13 12 10 30 30 H 1.09001 * 109.47227 * 240.00002 * 18 16 14 31 31 H 1.08992 * 109.47460 * 0.02562 * 18 16 14 32 32 H 1.09000 * 109.47367 * 180.02562 * 19 18 16 33 33 H 1.09001 * 109.46901 * 179.97438 * 20 19 18 34 34 H 1.08994 * 109.46503 * 60.00289 * 20 19 18 35 35 H 1.08996 * 109.47130 * 239.99538 * 21 20 19 36 36 H 1.09002 * 109.47045 * 119.99651 * 21 20 19 37 37 H 1.08997 * 109.47528 * 59.99397 * 22 16 14 38 38 H 1.08998 * 109.47094 * 60.00195 * 23 22 16 39 39 H 1.09005 * 109.47612 * 180.02562 * 23 22 16 40 40 H 1.09002 * 109.46948 * 240.00332 * 24 23 22 41 41 H 1.08988 * 109.47495 * 119.99292 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.5015 2.0429 -1.4001 5 1 1.4426 2.6543 0.6941 6 1 3.5427 1.4420 0.7059 7 6 2.0089 -1.2034 0.0059 8 1 1.4689 -2.1387 0.0101 9 7 3.3799 -1.2033 0.0065 10 6 4.0538 -2.3705 0.0117 11 8 3.4473 -3.4210 0.0164 12 6 5.5608 -2.3705 0.0129 13 7 6.0491 -3.7517 0.0195 14 6 7.3742 -3.9980 0.0211 15 8 8.1623 -3.0761 0.0175 16 6 7.8766 -5.4187 0.0272 17 1 7.5128 -5.9288 0.9193 18 6 7.3670 -6.1453 -1.2191 19 6 8.5574 -6.6297 -2.0494 20 6 9.4071 -7.5878 -1.2121 21 6 9.9165 -6.8612 0.0343 22 6 9.4065 -5.4187 0.0286 23 6 9.9176 -4.7026 -1.2232 24 6 9.4086 -5.4289 -2.4700 25 1 -0.4851 0.8400 -0.0041 26 1 3.8649 -0.3633 0.0031 27 1 5.9248 -1.8602 -0.8789 28 1 5.9235 -1.8531 0.9011 29 1 5.4187 -4.4889 0.0219 30 1 6.7614 -7.0004 -0.9191 31 1 6.7621 -5.4626 -1.8158 32 1 8.1946 -7.1469 -2.9376 33 1 10.2549 -7.9331 -1.8038 34 1 8.8014 -8.4428 -0.9121 35 1 11.0065 -6.8612 0.0348 36 1 9.5528 -7.3712 0.9263 37 1 9.7691 -4.9012 0.9167 38 1 9.5542 -3.6750 -1.2277 39 1 11.0076 -4.7029 -1.2226 40 1 10.2569 -5.7740 -3.0611 41 1 8.8035 -4.7463 -3.0665 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354398555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:33 Heat of formation + Delta-G solvation = -115.731682 kcal Electronic energy + Delta-G solvation = -22269.338092 eV Core-core repulsion = 18953.963859 eV Total energy + Delta-G solvation = -3315.374233 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08378 -40.55926 -39.34287 -36.31047 -35.37687 -33.85678 -32.54256 -32.16743 -31.61121 -29.28774 -26.37847 -24.36414 -23.37125 -22.86706 -21.48541 -21.32202 -20.52313 -18.70734 -17.69794 -17.39118 -17.37990 -17.01939 -16.75162 -16.51943 -16.24255 -15.85354 -15.25894 -15.00361 -14.45834 -14.14309 -13.91901 -13.75155 -13.63395 -13.04187 -12.99244 -12.91814 -12.90509 -12.87220 -12.83217 -12.55263 -12.46472 -12.01943 -11.62909 -11.59769 -11.20586 -10.75754 -10.70306 -10.66144 -10.42881 -10.34047 -10.05672 -8.47175 -6.09224 1.29605 1.32374 1.42375 1.62084 1.78353 2.04662 2.19022 2.86905 3.08980 3.50783 3.66070 3.72934 3.94509 4.09024 4.26647 4.34469 4.37511 4.37975 4.39860 4.44852 4.45684 4.55155 4.60292 4.65823 4.76486 4.92370 5.15080 5.17000 5.19312 5.28146 5.34821 5.41303 5.47094 5.48563 5.52431 5.58898 5.64015 5.86649 6.46570 6.53471 6.76563 7.19084 7.29037 7.76250 8.69319 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.037894 B = 0.003448 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.729899 B = 8118.986168 C = 8420.541807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.959 3.041 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.613 6.613 12 C 0.118 3.882 13 N -0.712 5.712 14 C 0.517 3.483 15 O -0.569 6.569 16 C -0.096 4.096 17 H 0.113 0.887 18 C -0.109 4.109 19 C -0.085 4.085 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.063 4.063 23 C -0.126 4.126 24 C -0.114 4.114 25 H 0.281 0.719 26 H 0.391 0.609 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.412 0.588 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.092 -10.776 -1.981 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.499 6.499 12 C -0.010 4.010 13 N -0.366 5.366 14 C 0.305 3.695 15 O -0.449 6.449 16 C -0.117 4.117 17 H 0.131 0.869 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.082 4.082 23 C -0.163 4.163 24 C -0.152 4.152 25 H 0.091 0.909 26 H 0.227 0.773 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.250 0.750 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 22.018 -10.696 -1.975 24.558 hybrid contribution -0.752 1.028 0.025 1.274 sum 21.265 -9.668 -1.950 23.441 Atomic orbital electron populations 1.69778 1.08018 1.29487 1.49233 1.26060 0.96422 1.02558 0.95685 0.85448 0.79530 0.77075 0.80087 1.18062 1.19751 1.15728 1.19040 0.80967 0.95295 1.50830 0.91823 1.41940 1.06149 1.07431 1.66286 1.20527 0.90084 0.83867 0.82313 1.90525 1.70772 1.32281 1.56358 1.20855 0.89508 0.85849 1.04803 1.45829 1.07759 1.08239 1.74810 1.21241 0.80973 0.92721 0.74546 1.90599 1.55487 1.47640 1.51164 1.21385 0.97813 0.90673 1.01843 0.86946 1.21623 0.98099 1.00264 0.94656 1.21065 0.94828 0.96054 0.98370 1.21546 0.99591 0.97466 0.96125 1.21549 1.00937 0.93448 0.98766 1.20779 0.91745 0.97178 0.98507 1.21729 1.00275 1.00070 0.94264 1.21573 0.99561 0.96836 0.97203 0.90884 0.77276 0.88153 0.88079 0.74990 0.89271 0.92880 0.90063 0.91048 0.90843 0.90985 0.90971 0.91796 0.92021 0.91796 0.90939 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.96 21.66 0.30 -54.08 16 2 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 3 Si 0.96 38.17 27.73 68.60 1.90 40.07 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.23 -7.99 6.53 99.48 0.65 -7.34 16 7 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 8 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 9 N -0.58 -26.67 5.09 -306.97 -1.56 -28.24 16 10 C 0.44 19.42 7.85 87.66 0.69 20.11 16 11 O -0.61 -31.57 15.24 -3.07 -0.05 -31.62 16 12 C 0.12 3.88 6.15 85.63 0.53 4.40 16 13 N -0.71 -21.67 5.27 -466.78 -2.46 -24.13 16 14 C 0.52 14.60 6.61 87.66 0.58 15.18 16 15 O -0.57 -18.98 13.66 -3.04 -0.04 -19.02 16 16 C -0.10 -2.00 2.56 -11.54 -0.03 -2.03 16 17 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.11 -2.03 5.21 30.60 0.16 -1.87 16 19 C -0.08 -1.36 3.20 -10.77 -0.03 -1.40 16 20 C -0.11 -1.39 5.71 30.59 0.17 -1.22 16 21 C -0.11 -1.52 5.71 30.59 0.17 -1.35 16 22 C -0.06 -1.23 2.36 -10.80 -0.03 -1.26 16 23 C -0.13 -2.70 5.39 30.60 0.16 -2.54 16 24 C -0.11 -2.13 5.71 30.62 0.17 -1.96 16 25 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 26 H 0.39 15.20 5.77 -92.71 -0.53 14.66 16 27 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 28 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 29 H 0.41 12.68 7.33 -92.71 -0.68 12.00 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.19 7.44 -2.39 -0.02 1.17 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.06 1.72 5.51 -2.39 -0.01 1.70 16 39 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -70.48 321.36 1.74 -68.74 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.23 Total: 40.15 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 3.87 Total: 8.11 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.72 Total: -106.44 kcal Atomic # 8 Polarization: -50.55 SS G_CDS: -0.09 Total: -50.63 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.90 Total: 40.07 kcal Total: -70.48 1.74 -68.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354398555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.989 kcal (2) G-P(sol) polarization free energy of solvation -70.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds