Wall clock time and date at job start Tue Mar 31 2020 02:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99394 * 3 2 1 5 5 H 1.48498 * 109.47515 * 29.99467 * 3 2 1 6 6 H 1.48508 * 109.46813 * 149.99790 * 3 2 1 7 7 C 1.38949 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99346 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99714 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99787 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99551 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46887 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00072 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99661 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99882 * 180.02562 * 14 13 12 17 17 H 1.08995 * 109.47063 * 59.99682 * 16 14 13 18 18 C 1.53006 * 109.46809 * 299.99610 * 16 14 13 19 19 C 1.52997 * 109.47127 * 240.00080 * 18 16 14 20 20 C 1.53000 * 109.47060 * 300.00449 * 19 18 16 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.52992 * 109.47055 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47302 * 60.00168 * 22 21 20 24 24 C 1.52996 * 109.47303 * 299.99905 * 23 22 21 25 25 H 0.97001 * 120.00075 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00059 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47090 * 60.00162 * 12 10 9 28 28 H 1.09002 * 109.47226 * 299.99934 * 12 10 9 29 29 H 0.97004 * 119.99926 * 0.02562 * 13 12 10 30 30 H 1.08998 * 109.46505 * 119.99952 * 18 16 14 31 31 H 1.08996 * 109.46884 * 0.02562 * 18 16 14 32 32 H 1.09002 * 109.47153 * 180.02562 * 19 18 16 33 33 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 35 35 H 1.09005 * 109.46828 * 239.99687 * 21 20 19 36 36 H 1.09000 * 109.47441 * 120.00086 * 21 20 19 37 37 H 1.09002 * 109.46985 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47779 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47105 * 60.00057 * 23 22 21 40 40 H 1.08996 * 109.47452 * 239.99542 * 24 23 22 41 41 H 1.09000 * 109.47054 * 119.99702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6528 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1957 -5.9765 -0.0005 14 6 1.7465 -7.2472 -0.0016 15 8 0.5541 -7.4687 -0.0027 16 6 2.7258 -8.3926 -0.0016 17 1 3.3518 -8.3353 0.8889 18 6 3.6063 -8.3108 -1.2502 19 6 3.4283 -9.5813 -2.0839 20 6 3.8355 -10.7987 -1.2515 21 6 2.9550 -10.8805 -0.0029 22 6 1.9612 -9.7173 -0.0027 23 6 1.0824 -9.7970 -1.2526 24 6 1.9628 -9.7152 -2.5011 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0002 27 1 0.6174 -4.9204 -0.8903 28 1 0.6167 -4.9208 0.8897 29 1 3.1494 -5.7992 -0.0001 30 1 4.6504 -8.2147 -0.9527 31 1 3.3164 -7.4432 -1.8429 32 1 4.0559 -9.5232 -2.9732 33 1 3.7091 -11.7038 -1.8456 34 1 4.8797 -10.7027 -0.9540 35 1 3.5810 -10.8233 0.8875 36 1 2.4100 -11.8245 -0.0039 37 1 1.3342 -9.7753 0.8870 38 1 0.3740 -8.9685 -1.2522 39 1 0.5370 -10.7408 -1.2537 40 1 1.6730 -8.8477 -3.0940 41 1 1.8357 -10.6201 -3.0953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354398562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:36 Heat of formation + Delta-G solvation = -101.359361 kcal Electronic energy + Delta-G solvation = -22212.829231 eV Core-core repulsion = 18898.078229 eV Total energy + Delta-G solvation = -3314.751003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.09034 -38.85392 -37.85790 -34.48636 -33.72321 -31.64087 -31.41956 -31.22768 -30.82715 -27.56384 -24.68925 -23.34452 -22.59545 -22.02720 -20.08478 -19.57339 -18.15588 -17.41913 -16.65149 -16.58712 -15.91051 -15.73694 -15.15780 -15.03771 -14.78901 -14.26881 -13.76524 -13.73042 -13.03390 -12.76904 -12.28887 -12.19960 -12.16320 -12.13552 -12.06157 -12.03581 -12.03370 -11.63633 -11.53009 -11.12867 -10.80509 -10.46746 -10.33335 -10.26528 -9.94585 -9.91135 -9.64486 -9.26453 -8.71437 -8.63759 -8.10978 -6.52345 -3.94421 2.86697 3.11058 3.21195 3.25838 3.41216 3.73400 4.10680 4.37557 4.51703 4.56586 4.87938 5.01374 5.13027 5.15801 5.16108 5.18312 5.21150 5.26534 5.31673 5.39056 5.48393 5.57950 5.68638 5.86669 5.89930 5.96367 5.97788 5.99837 6.06963 6.13024 6.18254 6.25124 6.28825 6.39769 6.51843 6.77296 7.45146 7.85202 7.91362 8.43700 8.50979 9.03752 9.38507 9.86415 10.64558 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041581 B = 0.003227 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.229642 B = 8673.757389 C = 8920.714480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.708 5.708 14 C 0.516 3.484 15 O -0.545 6.545 16 C -0.100 4.100 17 H 0.095 0.905 18 C -0.109 4.109 19 C -0.085 4.085 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.063 4.063 23 C -0.126 4.126 24 C -0.115 4.115 25 H 0.274 0.726 26 H 0.396 0.604 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.410 0.590 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.205 -19.001 -2.042 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.362 5.362 14 C 0.302 3.698 15 O -0.424 6.424 16 C -0.122 4.122 17 H 0.113 0.887 18 C -0.147 4.147 19 C -0.104 4.104 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.082 4.082 23 C -0.163 4.163 24 C -0.152 4.152 25 H 0.084 0.916 26 H 0.230 0.770 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.248 0.752 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.013 -18.943 -2.034 19.470 hybrid contribution 0.212 1.060 0.027 1.082 sum 4.225 -17.882 -2.007 18.484 Atomic orbital electron populations 1.69617 1.06019 1.28531 1.49332 1.25328 0.95665 0.99938 0.96784 0.85813 0.79236 0.80486 0.78498 1.20257 1.20791 1.19301 1.19731 0.93464 0.82024 1.48264 0.87683 1.41801 1.09473 1.04492 1.62636 1.19770 0.88304 0.85026 0.85555 1.90493 1.13721 1.86843 1.57352 1.20939 0.91967 0.85900 1.03108 1.45765 1.11515 1.04700 1.74184 1.20592 0.89613 0.83687 0.75867 1.90599 1.16952 1.84620 1.50199 1.21299 0.96728 0.93677 1.00462 0.88680 1.21598 0.99345 0.98444 0.95278 1.21016 0.96905 0.94575 0.97881 1.21547 0.99191 0.97727 0.96582 1.21563 0.97564 0.98105 0.97912 1.20750 0.95900 0.92064 0.99443 1.21783 0.98301 1.03100 0.93165 1.21554 0.94459 1.01377 0.97827 0.91583 0.77050 0.89982 0.89951 0.75176 0.90958 0.91078 0.91080 0.92142 0.92045 0.92058 0.91840 0.90668 0.88912 0.92644 0.92222 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.90 13.05 55.50 0.72 -23.18 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.30 9.68 -14.93 -0.14 -8.45 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 10 C 0.43 9.80 7.85 -10.98 -0.09 9.72 16 11 O -0.60 -15.24 15.24 5.55 0.08 -15.16 16 12 C 0.11 2.00 6.15 -5.19 -0.03 1.97 16 13 N -0.71 -11.68 5.27 -61.47 -0.32 -12.01 16 14 C 0.52 7.94 6.61 -10.99 -0.07 7.86 16 15 O -0.55 -9.78 13.66 5.56 0.08 -9.70 16 16 C -0.10 -1.18 2.56 -91.79 -0.24 -1.42 16 17 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.11 -1.16 5.21 -26.73 -0.14 -1.30 16 19 C -0.09 -0.82 3.19 -90.64 -0.29 -1.11 16 20 C -0.11 -0.94 5.71 -26.73 -0.15 -1.09 16 21 C -0.11 -1.00 5.71 -26.74 -0.15 -1.16 16 22 C -0.06 -0.70 2.36 -90.65 -0.21 -0.91 16 23 C -0.13 -1.49 5.39 -26.73 -0.14 -1.63 16 24 C -0.11 -1.21 5.71 -26.76 -0.15 -1.36 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 26 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.41 6.70 7.34 -40.82 -0.30 6.40 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.86 7.44 -51.93 -0.39 0.47 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.09 1.35 5.51 -51.93 -0.29 1.07 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -29.93 324.46 -7.84 -37.77 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.30 Total: 13.87 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.91 Total: 1.71 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.34 Total: -48.87 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.16 Total: -24.86 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.93 -7.84 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354398562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.586 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds