Wall clock time and date at job start Tue Mar 31 2020 02:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99394 * 3 2 1 5 5 H 1.48498 * 109.47515 * 29.99467 * 3 2 1 6 6 H 1.48508 * 109.46813 * 149.99790 * 3 2 1 7 7 C 1.38949 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99346 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99714 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99787 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99551 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46887 * 179.97438 * 12 10 9 14 14 C 1.34776 * 120.00072 * 180.02562 * 13 12 10 15 15 O 1.21278 * 119.99661 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99882 * 180.02562 * 14 13 12 17 17 H 1.08995 * 109.47063 * 59.99682 * 16 14 13 18 18 C 1.53006 * 109.46809 * 299.99610 * 16 14 13 19 19 C 1.52997 * 109.47127 * 240.00080 * 18 16 14 20 20 C 1.53000 * 109.47060 * 300.00449 * 19 18 16 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 C 1.52992 * 109.47055 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47302 * 60.00168 * 22 21 20 24 24 C 1.52996 * 109.47303 * 299.99905 * 23 22 21 25 25 H 0.97001 * 120.00075 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00059 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.47090 * 60.00162 * 12 10 9 28 28 H 1.09002 * 109.47226 * 299.99934 * 12 10 9 29 29 H 0.97004 * 119.99926 * 0.02562 * 13 12 10 30 30 H 1.08998 * 109.46505 * 119.99952 * 18 16 14 31 31 H 1.08996 * 109.46884 * 0.02562 * 18 16 14 32 32 H 1.09002 * 109.47153 * 180.02562 * 19 18 16 33 33 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 34 34 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 35 35 H 1.09005 * 109.46828 * 239.99687 * 21 20 19 36 36 H 1.09000 * 109.47441 * 120.00086 * 21 20 19 37 37 H 1.09002 * 109.46985 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47779 * 179.97438 * 23 22 21 39 39 H 1.09004 * 109.47105 * 60.00057 * 23 22 21 40 40 H 1.08996 * 109.47452 * 239.99542 * 24 23 22 41 41 H 1.09000 * 109.47054 * 119.99702 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6528 0.6999 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1957 -5.9765 -0.0005 14 6 1.7465 -7.2472 -0.0016 15 8 0.5541 -7.4687 -0.0027 16 6 2.7258 -8.3926 -0.0016 17 1 3.3518 -8.3353 0.8889 18 6 3.6063 -8.3108 -1.2502 19 6 3.4283 -9.5813 -2.0839 20 6 3.8355 -10.7987 -1.2515 21 6 2.9550 -10.8805 -0.0029 22 6 1.9612 -9.7173 -0.0027 23 6 1.0824 -9.7970 -1.2526 24 6 1.9628 -9.7152 -2.5011 25 1 -0.4850 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0002 27 1 0.6174 -4.9204 -0.8903 28 1 0.6167 -4.9208 0.8897 29 1 3.1494 -5.7992 -0.0001 30 1 4.6504 -8.2147 -0.9527 31 1 3.3164 -7.4432 -1.8429 32 1 4.0559 -9.5232 -2.9732 33 1 3.7091 -11.7038 -1.8456 34 1 4.8797 -10.7027 -0.9540 35 1 3.5810 -10.8233 0.8875 36 1 2.4100 -11.8245 -0.0039 37 1 1.3342 -9.7753 0.8870 38 1 0.3740 -8.9685 -1.2522 39 1 0.5370 -10.7408 -1.2537 40 1 1.6730 -8.8477 -3.0940 41 1 1.8357 -10.6201 -3.0953 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354398562.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:35 Heat of formation + Delta-G solvation = -120.889709 kcal Electronic energy + Delta-G solvation = -22213.676131 eV Core-core repulsion = 18898.078229 eV Total energy + Delta-G solvation = -3315.597902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08592 -40.43750 -39.30992 -36.26835 -35.34832 -33.40772 -32.52606 -32.16125 -31.61417 -29.13882 -26.51659 -24.40242 -23.37611 -22.87797 -21.38060 -21.31202 -20.08816 -18.74435 -17.66997 -17.39281 -17.34335 -17.00699 -16.65876 -16.39596 -16.26330 -15.89277 -15.37980 -15.16391 -14.23374 -13.87353 -13.70396 -13.63683 -13.55900 -13.03744 -12.93995 -12.91523 -12.90483 -12.87200 -12.83427 -12.55360 -12.47033 -12.13293 -11.62892 -11.58307 -11.20618 -10.75743 -10.69315 -10.57608 -10.42617 -10.13568 -10.03868 -8.52430 -6.02908 1.35434 1.42051 1.54823 1.62842 1.89530 2.05625 2.32019 3.11293 3.14659 3.50668 3.66481 3.72820 4.03239 4.20226 4.28182 4.34563 4.37958 4.38547 4.41771 4.44809 4.46141 4.55080 4.60169 4.65979 4.76276 4.92351 5.15008 5.16953 5.19610 5.29304 5.34575 5.36979 5.42105 5.48213 5.52659 5.58833 5.63937 5.90444 6.44967 6.56169 7.01879 7.21601 7.42795 7.92506 8.64529 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041581 B = 0.003227 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.229642 B = 8673.757389 C = 8920.714480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.121 3.879 13 N -0.709 5.709 14 C 0.514 3.486 15 O -0.572 6.572 16 C -0.095 4.095 17 H 0.114 0.886 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.063 4.063 23 C -0.127 4.127 24 C -0.114 4.114 25 H 0.280 0.720 26 H 0.398 0.602 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.413 0.587 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 -20.134 -2.077 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.363 5.363 14 C 0.303 3.697 15 O -0.452 6.452 16 C -0.116 4.116 17 H 0.132 0.868 18 C -0.146 4.146 19 C -0.103 4.103 20 C -0.147 4.147 21 C -0.146 4.146 22 C -0.082 4.082 23 C -0.164 4.164 24 C -0.152 4.152 25 H 0.089 0.911 26 H 0.232 0.768 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.251 0.749 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.234 -20.099 -2.072 20.873 hybrid contribution -0.223 1.364 0.028 1.383 sum 5.012 -18.735 -2.044 19.501 Atomic orbital electron populations 1.69684 1.07051 1.29664 1.49282 1.26145 0.96535 1.02725 0.95727 0.84861 0.77935 0.76406 0.78745 1.19519 1.19643 1.19362 1.19750 0.92991 0.83552 1.50446 0.89528 1.41855 1.09559 1.04654 1.63433 1.20431 0.88145 0.85914 0.83557 1.90467 1.15109 1.87535 1.57987 1.20739 0.91854 0.84211 1.03854 1.45807 1.11196 1.04661 1.74672 1.21317 0.89957 0.83870 0.74566 1.90599 1.18455 1.84914 1.51246 1.21384 0.96170 0.92150 1.01939 0.86841 1.21627 0.99989 0.98440 0.94555 1.21041 0.96155 0.94637 0.98424 1.21546 0.99714 0.97329 0.96071 1.21547 0.97167 0.97085 0.98850 1.20770 0.96278 0.92760 0.98415 1.21727 0.98197 1.02091 0.94389 1.21550 0.95129 1.01349 0.97137 0.91052 0.76775 0.89254 0.89068 0.74945 0.89051 0.93016 0.89926 0.90988 0.90681 0.90879 0.90972 0.91954 0.92287 0.91773 0.93961 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.92 13.05 21.66 0.28 -48.64 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 3 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.34 -18.70 9.68 84.04 0.81 -17.89 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.32 5.29 -306.99 -1.62 -29.95 16 10 C 0.43 20.11 7.85 87.66 0.69 20.80 16 11 O -0.62 -32.23 15.24 -3.06 -0.05 -32.27 16 12 C 0.12 4.51 6.15 85.63 0.53 5.03 16 13 N -0.71 -23.36 5.27 -466.78 -2.46 -25.82 16 14 C 0.51 15.75 6.61 87.66 0.58 16.33 16 15 O -0.57 -20.82 13.66 -3.02 -0.04 -20.87 16 16 C -0.10 -2.12 2.56 -11.55 -0.03 -2.15 16 17 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 18 C -0.11 -2.13 5.21 30.60 0.16 -1.97 16 19 C -0.08 -1.41 3.19 -10.81 -0.03 -1.45 16 20 C -0.11 -1.43 5.71 30.59 0.17 -1.26 16 21 C -0.11 -1.60 5.71 30.59 0.17 -1.42 16 22 C -0.06 -1.32 2.36 -10.81 -0.03 -1.35 16 23 C -0.13 -2.92 5.39 30.59 0.16 -2.75 16 24 C -0.11 -2.27 5.71 30.58 0.17 -2.10 16 25 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 27 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.41 13.38 7.34 -92.71 -0.68 12.70 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.22 7.44 -2.39 -0.02 1.20 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.06 1.77 5.51 -2.39 -0.01 1.76 16 39 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -64.42 324.46 1.61 -62.81 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.37 Total: 41.21 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 3.83 Total: 9.75 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -3.80 Total: -104.41 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -0.09 Total: -53.14 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -64.42 1.61 -62.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354398562.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.082 kcal (2) G-P(sol) polarization free energy of solvation -64.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds