Wall clock time and date at job start Tue Mar 31 2020 01:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 119.99436 * 2 1 4 4 H 1.08005 * 119.99501 * 202.34616 * 3 2 1 5 5 C 1.38810 * 120.00564 * 22.35407 * 3 2 1 6 6 N 1.31625 * 119.99770 * 11.43723 * 5 3 2 7 7 Si 1.86798 * 120.00355 * 191.43458 * 5 3 2 8 8 H 1.48501 * 109.47034 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46984 * 119.99660 * 7 5 3 10 10 H 1.48496 * 109.47254 * 240.00095 * 7 5 3 11 11 C 1.46495 * 120.00112 * 180.02562 * 2 1 3 12 12 C 1.50707 * 109.46903 * 269.99962 * 11 2 1 13 13 O 1.21286 * 119.99828 * 359.97438 * 12 11 2 14 14 N 1.34768 * 120.00071 * 180.02562 * 12 11 2 15 15 C 1.46503 * 120.00073 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47252 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 15 14 18 18 C 1.38245 * 119.97622 * 270.32684 * 17 16 15 19 19 C 1.38191 * 120.02832 * 180.28136 * 18 17 16 20 20 C 1.38463 * 119.96970 * 359.41237 * 19 18 17 21 21 F 1.35103 * 120.02442 * 180.30309 * 20 19 18 22 22 C 1.38454 * 119.95151 * 0.28588 * 20 19 18 23 23 C 1.38202 * 119.97463 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47580 * 274.11676 * 1 2 3 25 25 H 1.09003 * 109.47698 * 34.11978 * 1 2 3 26 26 H 1.09000 * 109.47087 * 154.12115 * 1 2 3 27 27 H 0.96993 * 119.99960 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.47182 * 150.00183 * 11 2 1 29 29 H 1.08997 * 109.47505 * 29.99732 * 11 2 1 30 30 H 0.97001 * 120.00200 * 359.97438 * 14 12 11 31 31 H 1.08999 * 109.46718 * 60.00074 * 15 14 12 32 32 H 1.08991 * 109.47254 * 299.99675 * 15 14 12 33 33 H 1.09006 * 109.46650 * 60.00249 * 16 15 14 34 34 H 1.09005 * 109.46994 * 300.00778 * 16 15 14 35 35 H 1.08000 * 119.98378 * 359.97438 * 18 17 16 36 36 H 1.07997 * 120.01552 * 179.70060 * 19 18 17 37 37 H 1.08004 * 120.01923 * 180.02562 * 22 20 19 38 38 H 1.07994 * 119.98688 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4572 6 7 0.3850 2.2688 1.0955 7 14 2.3352 4.0050 0.1667 8 1 3.6114 3.8173 -0.5691 9 1 1.4237 4.8608 -0.6347 10 1 2.6074 4.6583 1.4721 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 8 2.0549 -1.0219 2.3423 14 7 3.1116 -2.8516 1.6659 15 6 3.3563 -3.2748 3.0470 16 6 4.1212 -4.5999 3.0465 17 6 4.3723 -5.0356 4.4671 18 6 5.5213 -4.6310 5.1208 19 6 5.7555 -5.0346 6.4216 20 6 4.8329 -5.8346 7.0743 21 9 5.0578 -6.2248 8.3480 22 6 3.6795 -6.2340 6.4207 23 6 3.4500 -5.8336 5.1181 24 1 -0.3634 0.0738 1.0250 25 1 -0.3634 0.8508 -0.5764 26 1 -0.3633 -0.9246 -0.4485 27 1 -0.0455 3.0773 1.4146 28 1 3.1499 -1.1381 -0.5143 29 1 1.6085 -2.0281 -0.5147 30 1 3.4268 -3.3972 0.9285 31 1 2.4040 -3.4056 3.5610 32 1 3.9452 -2.5152 3.5609 33 1 5.0735 -4.4695 2.5324 34 1 3.5319 -5.3594 2.5326 35 1 6.2386 -4.0033 4.6130 36 1 6.6555 -4.7224 6.9304 37 1 2.9589 -6.8577 6.9289 38 1 2.5503 -6.1447 4.6083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355808364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:16 Heat of formation + Delta-G solvation = -34.325307 kcal Electronic energy + Delta-G solvation = -20723.221885 eV Core-core repulsion = 17287.917392 eV Total energy + Delta-G solvation = -3435.304493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.11420 -39.57346 -38.64861 -35.45169 -34.61871 -32.32129 -31.40755 -31.17242 -28.57874 -26.71345 -25.71988 -23.53347 -23.33205 -21.53226 -21.22745 -19.60712 -17.90609 -16.75079 -16.67490 -16.34158 -15.96061 -15.77014 -15.23487 -15.00603 -14.59141 -14.20798 -13.97405 -13.76370 -13.41206 -13.24587 -13.10079 -12.66645 -12.61080 -11.87111 -11.70369 -11.65534 -11.51895 -11.20462 -11.00655 -10.81993 -10.60619 -10.31627 -9.94808 -9.84773 -9.38271 -9.01864 -8.78531 -8.49725 -8.43688 -6.71360 -5.64650 -3.11398 0.85585 0.96204 3.27402 3.42030 3.48395 3.51152 3.63774 3.77006 4.01546 4.42217 4.54657 4.58838 4.67932 4.87449 4.98773 5.04509 5.23103 5.42768 5.51316 5.61778 5.62820 5.78110 5.84807 5.85092 5.89822 5.95708 6.16537 6.21668 6.29967 6.33361 6.62053 6.77522 7.00192 7.43234 7.80514 7.89776 8.14959 8.44867 9.17287 9.28821 9.89846 10.37179 11.40148 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.002924 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.804696 B = 9574.916241 C = 9947.777916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.574 5.574 3 C -0.258 4.258 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.896 5.896 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.133 3.867 12 C 0.467 3.533 13 O -0.508 6.508 14 N -0.752 5.752 15 C 0.125 3.875 16 C -0.090 4.090 17 C -0.086 4.086 18 C -0.085 4.085 19 C -0.152 4.152 20 C 0.091 3.909 21 F -0.143 7.143 22 C -0.152 4.152 23 C -0.085 4.085 24 H 0.033 0.967 25 H 0.049 0.951 26 H -0.004 1.004 27 H 0.251 0.749 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.391 0.609 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.861 -19.353 4.978 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.294 5.294 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.540 5.540 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.000 4.000 12 C 0.251 3.749 13 O -0.379 6.379 14 N -0.410 5.410 15 C 0.000 4.000 16 C -0.128 4.128 17 C -0.087 4.087 18 C -0.103 4.103 19 C -0.171 4.171 20 C 0.072 3.928 21 F -0.121 7.121 22 C -0.171 4.171 23 C -0.103 4.103 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.014 0.986 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.224 0.776 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.395 -18.625 5.756 21.225 hybrid contribution 0.646 0.524 0.237 0.865 sum 9.041 -18.101 5.993 21.102 Atomic orbital electron populations 1.20855 0.81944 0.95514 0.99768 1.43875 1.02120 0.99820 1.83552 1.19191 0.98274 0.84897 1.36410 0.91261 1.25095 0.97701 0.98641 0.97757 1.70111 1.17704 1.26805 1.39368 0.86174 0.78640 0.84247 0.77367 1.20303 1.21591 1.21712 1.21009 0.97932 0.90343 0.90712 1.23682 0.76577 0.79088 0.95527 1.90711 1.48483 1.52367 1.46371 1.46593 1.61467 1.25987 1.06924 1.21144 0.99409 0.94008 0.85432 1.20812 1.01721 0.97634 0.92619 1.19840 0.94667 0.97764 0.96450 1.20979 0.97205 0.98426 0.93662 1.21153 1.00063 0.99823 0.96018 1.17748 0.96244 0.99136 0.79720 1.91495 1.94794 1.89455 1.36386 1.21149 0.97058 1.02899 0.95979 1.20969 0.98953 0.96735 0.93649 0.94857 0.93266 0.98569 0.93847 0.90951 0.91566 0.77631 0.92159 0.92088 0.90139 0.90174 0.84791 0.84732 0.84742 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 9.01 59.85 0.54 4.75 16 2 N -0.57 -14.94 2.41 -182.50 -0.44 -15.39 16 3 C -0.26 -7.34 9.67 -15.06 -0.15 -7.49 16 4 H 0.07 1.90 7.85 -52.48 -0.41 1.49 16 5 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 6 N -0.90 -27.48 10.59 55.49 0.59 -26.89 16 7 Si 0.91 22.53 29.57 -169.99 -5.03 17.51 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 C 0.13 2.67 6.19 -5.19 -0.03 2.64 16 12 C 0.47 9.63 7.90 -10.99 -0.09 9.54 16 13 O -0.51 -13.59 16.43 5.55 0.09 -13.50 16 14 N -0.75 -10.89 5.56 -60.29 -0.33 -11.22 16 15 C 0.12 1.65 5.66 -4.04 -0.02 1.63 16 16 C -0.09 -0.79 5.46 -27.88 -0.15 -0.94 16 17 C -0.09 -0.81 5.13 -104.62 -0.54 -1.35 16 18 C -0.08 -0.77 9.70 -39.60 -0.38 -1.16 16 19 C -0.15 -1.43 10.03 -39.52 -0.40 -1.82 16 20 C 0.09 0.93 7.30 -39.42 -0.29 0.64 16 21 F -0.14 -1.57 17.27 2.25 0.04 -1.54 16 22 C -0.15 -1.41 10.03 -39.52 -0.40 -1.81 16 23 C -0.08 -0.76 9.70 -39.59 -0.38 -1.15 16 24 H 0.03 0.96 7.42 -51.93 -0.39 0.58 16 25 H 0.05 1.33 7.18 -51.93 -0.37 0.96 16 26 H 0.00 -0.09 7.85 -51.93 -0.41 -0.50 16 27 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 29 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 30 H 0.39 4.13 8.47 -40.82 -0.35 3.78 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -35.94 331.71 -7.72 -43.66 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.26 Total: -1.25 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.38 Total: 3.62 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.19 Total: -53.50 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.94 -7.72 -43.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355808364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.334 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds