Wall clock time and date at job start Tue Mar 31 2020 01:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 119.99436 * 2 1 4 4 H 1.08005 * 119.99501 * 202.34616 * 3 2 1 5 5 C 1.38810 * 120.00564 * 22.35407 * 3 2 1 6 6 N 1.31625 * 119.99770 * 11.43723 * 5 3 2 7 7 Si 1.86798 * 120.00355 * 191.43458 * 5 3 2 8 8 H 1.48501 * 109.47034 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46984 * 119.99660 * 7 5 3 10 10 H 1.48496 * 109.47254 * 240.00095 * 7 5 3 11 11 C 1.46495 * 120.00112 * 180.02562 * 2 1 3 12 12 C 1.50707 * 109.46903 * 269.99962 * 11 2 1 13 13 O 1.21286 * 119.99828 * 359.97438 * 12 11 2 14 14 N 1.34768 * 120.00071 * 180.02562 * 12 11 2 15 15 C 1.46503 * 120.00073 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47252 * 179.97438 * 15 14 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 15 14 18 18 C 1.38245 * 119.97622 * 270.32684 * 17 16 15 19 19 C 1.38191 * 120.02832 * 180.28136 * 18 17 16 20 20 C 1.38463 * 119.96970 * 359.41237 * 19 18 17 21 21 F 1.35103 * 120.02442 * 180.30309 * 20 19 18 22 22 C 1.38454 * 119.95151 * 0.28588 * 20 19 18 23 23 C 1.38202 * 119.97463 * 359.97438 * 22 20 19 24 24 H 1.09001 * 109.47580 * 274.11676 * 1 2 3 25 25 H 1.09003 * 109.47698 * 34.11978 * 1 2 3 26 26 H 1.09000 * 109.47087 * 154.12115 * 1 2 3 27 27 H 0.96993 * 119.99960 * 180.02562 * 6 5 3 28 28 H 1.08999 * 109.47182 * 150.00183 * 11 2 1 29 29 H 1.08997 * 109.47505 * 29.99732 * 11 2 1 30 30 H 0.97001 * 120.00200 * 359.97438 * 14 12 11 31 31 H 1.08999 * 109.46718 * 60.00074 * 15 14 12 32 32 H 1.08991 * 109.47254 * 299.99675 * 15 14 12 33 33 H 1.09006 * 109.46650 * 60.00249 * 16 15 14 34 34 H 1.09005 * 109.46994 * 300.00778 * 16 15 14 35 35 H 1.08000 * 119.98378 * 359.97438 * 18 17 16 36 36 H 1.07997 * 120.01552 * 179.70060 * 19 18 17 37 37 H 1.08004 * 120.01923 * 180.02562 * 22 20 19 38 38 H 1.07994 * 119.98688 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4572 6 7 0.3850 2.2688 1.0955 7 14 2.3352 4.0050 0.1667 8 1 3.6114 3.8173 -0.5691 9 1 1.4237 4.8608 -0.6347 10 1 2.6074 4.6583 1.4721 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4201 13 8 2.0549 -1.0219 2.3423 14 7 3.1116 -2.8516 1.6659 15 6 3.3563 -3.2748 3.0470 16 6 4.1212 -4.5999 3.0465 17 6 4.3723 -5.0356 4.4671 18 6 5.5213 -4.6310 5.1208 19 6 5.7555 -5.0346 6.4216 20 6 4.8329 -5.8346 7.0743 21 9 5.0578 -6.2248 8.3480 22 6 3.6795 -6.2340 6.4207 23 6 3.4500 -5.8336 5.1181 24 1 -0.3634 0.0738 1.0250 25 1 -0.3634 0.8508 -0.5764 26 1 -0.3633 -0.9246 -0.4485 27 1 -0.0455 3.0773 1.4146 28 1 3.1499 -1.1381 -0.5143 29 1 1.6085 -2.0281 -0.5147 30 1 3.4268 -3.3972 0.9285 31 1 2.4040 -3.4056 3.5610 32 1 3.9452 -2.5152 3.5609 33 1 5.0735 -4.4695 2.5324 34 1 3.5319 -5.3594 2.5326 35 1 6.2386 -4.0033 4.6130 36 1 6.6555 -4.7224 6.9304 37 1 2.9589 -6.8577 6.9289 38 1 2.5503 -6.1447 4.6083 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355808364.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:15 Heat of formation + Delta-G solvation = -58.206038 kcal Electronic energy + Delta-G solvation = -20724.257431 eV Core-core repulsion = 17287.917392 eV Total energy + Delta-G solvation = -3436.340039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.91629 -40.55344 -39.99069 -37.15219 -36.11069 -33.51991 -33.09584 -32.09279 -29.83976 -28.20083 -27.76009 -24.68373 -24.02480 -23.25708 -22.13069 -21.14081 -18.79284 -18.65594 -17.82973 -17.45115 -17.20716 -16.64282 -16.53964 -16.31868 -16.11147 -15.42946 -15.13426 -14.89283 -14.74882 -14.59978 -14.43320 -14.03379 -13.71747 -13.55130 -13.05347 -12.81879 -12.63052 -12.54021 -12.51748 -12.34799 -12.15911 -12.01181 -11.85328 -11.81159 -10.85668 -10.51088 -10.07895 -9.87496 -9.55443 -8.77714 -7.79457 -5.28656 0.11279 0.27319 1.45716 1.47222 1.57745 2.02441 2.37996 2.53488 2.66182 3.29088 3.38135 3.74218 3.75647 3.85649 3.98618 4.13738 4.13897 4.34249 4.42044 4.44724 4.63838 4.67740 4.77922 4.84097 4.89987 5.03505 5.03862 5.15906 5.17115 5.26567 5.32858 5.57897 5.63356 5.70196 5.77558 5.92590 6.31637 6.87100 7.16241 7.65738 7.89100 8.28949 9.24618 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.002924 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.804696 B = 9574.916241 C = 9947.777916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.595 5.595 3 C -0.261 4.261 4 H 0.079 0.921 5 C -0.058 4.058 6 N -0.936 5.936 7 Si 0.971 3.029 8 H -0.259 1.259 9 H -0.287 1.287 10 H -0.300 1.300 11 C 0.127 3.873 12 C 0.469 3.531 13 O -0.580 6.580 14 N -0.724 5.724 15 C 0.126 3.874 16 C -0.074 4.074 17 C -0.096 4.096 18 C -0.090 4.090 19 C -0.159 4.159 20 C 0.070 3.930 21 F -0.152 7.152 22 C -0.159 4.159 23 C -0.089 4.089 24 H -0.010 1.010 25 H 0.024 0.976 26 H 0.038 0.962 27 H 0.244 0.756 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.416 0.584 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.503 -21.188 3.399 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.316 5.316 3 C -0.391 4.391 4 H 0.096 0.904 5 C -0.253 4.253 6 N -0.582 5.582 7 Si 0.799 3.201 8 H -0.183 1.183 9 H -0.214 1.214 10 H -0.228 1.228 11 C -0.004 4.004 12 C 0.254 3.746 13 O -0.457 6.457 14 N -0.380 5.380 15 C 0.002 3.998 16 C -0.111 4.111 17 C -0.097 4.097 18 C -0.108 4.108 19 C -0.178 4.178 20 C 0.051 3.949 21 F -0.130 7.130 22 C -0.177 4.177 23 C -0.107 4.107 24 H 0.008 0.992 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.253 0.747 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.109 -20.562 4.129 23.282 hybrid contribution 0.198 0.913 0.730 1.186 sum 10.306 -19.649 4.859 22.714 Atomic orbital electron populations 1.20555 0.82555 0.96488 0.97065 1.44052 1.02274 1.01313 1.83963 1.19611 0.98455 0.86172 1.34897 0.90378 1.25946 0.98573 1.02401 0.98411 1.70322 1.19478 1.27035 1.41408 0.85143 0.78423 0.79793 0.76710 1.18263 1.21392 1.22807 1.21290 0.99307 0.89016 0.90763 1.23447 0.76368 0.79933 0.94846 1.90707 1.51813 1.55047 1.48155 1.46117 1.59070 1.24195 1.08660 1.21172 0.98919 0.95875 0.83842 1.20707 1.02341 0.95262 0.92808 1.19987 0.94874 0.97991 0.96810 1.21230 0.97637 0.98361 0.93613 1.21371 1.00462 0.99617 0.96348 1.18045 0.97160 1.00039 0.79662 1.91468 1.94918 1.89655 1.37004 1.21382 0.97044 1.02983 0.96315 1.21238 0.99468 0.96420 0.93557 0.99206 0.95714 0.94334 0.94692 0.88376 0.87454 0.74671 0.93909 0.94272 0.88096 0.87839 0.83289 0.83514 0.83387 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.25 9.01 127.77 1.15 10.40 16 2 N -0.60 -30.55 2.41 -731.31 -1.76 -32.31 16 3 C -0.26 -14.76 9.67 84.03 0.81 -13.94 16 4 H 0.08 4.17 7.85 -2.91 -0.02 4.14 16 5 C -0.06 -3.45 5.13 84.86 0.44 -3.02 16 6 N -0.94 -59.44 10.59 21.65 0.23 -59.21 16 7 Si 0.97 46.94 29.57 68.60 2.03 48.96 16 8 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 10 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 11 C 0.13 4.74 6.19 85.64 0.53 5.27 16 12 C 0.47 18.58 7.90 87.66 0.69 19.27 16 13 O -0.58 -31.45 16.43 -3.05 -0.05 -31.50 16 14 N -0.72 -18.83 5.56 -463.05 -2.57 -21.41 16 15 C 0.13 3.11 5.66 86.38 0.49 3.60 16 16 C -0.07 -1.04 5.46 29.85 0.16 -0.87 16 17 C -0.10 -1.57 5.13 -19.86 -0.10 -1.67 16 18 C -0.09 -1.49 9.70 22.26 0.22 -1.27 16 19 C -0.16 -2.83 10.03 22.31 0.22 -2.60 16 20 C 0.07 1.39 7.30 22.37 0.16 1.56 16 21 F -0.15 -3.32 17.27 44.97 0.78 -2.54 16 22 C -0.16 -2.76 10.03 22.31 0.22 -2.53 16 23 C -0.09 -1.42 9.70 22.26 0.22 -1.20 16 24 H -0.01 -0.63 7.42 -2.39 -0.02 -0.65 16 25 H 0.02 1.35 7.18 -2.39 -0.02 1.33 16 26 H 0.04 1.62 7.85 -2.39 -0.02 1.60 16 27 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.10 3.18 8.03 -2.39 -0.02 3.16 16 29 H 0.11 3.13 7.86 -2.39 -0.02 3.11 16 30 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.07 8.09 -2.38 -0.02 1.05 16 34 H 0.10 1.04 8.08 -2.38 -0.02 1.02 16 35 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -81.87 331.71 4.14 -77.73 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.28 Total: 7.30 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.21 Total: 12.99 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.11 Total: -112.93 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.05 Total: -31.50 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -81.87 4.14 -77.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355808364.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.521 kcal (2) G-P(sol) polarization free energy of solvation -81.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds