Wall clock time and date at job start Tue Mar 31 2020 02:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48497 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 299.99501 * 3 2 1 6 6 H 1.48500 * 109.47417 * 59.99655 * 3 2 1 7 7 C 1.37879 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47047 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47062 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46874 * 180.02562 * 11 10 9 13 13 C 1.35179 * 124.22485 * 269.99493 * 12 11 10 14 14 O 1.21232 * 127.40722 * 2.63319 * 13 12 11 15 15 C 1.51268 * 105.18046 * 182.64978 * 13 12 11 16 16 H 1.09005 * 109.94988 * 109.61348 * 15 13 12 17 17 C 1.52492 * 111.42466 * 232.43696 * 15 13 12 18 18 C 1.54934 * 106.99222 * 207.99706 * 17 15 13 19 19 C 1.50667 * 107.54186 * 282.76208 * 18 17 15 20 20 C 1.50710 * 116.20742 * 65.52008 * 19 18 17 21 21 C 1.52331 * 112.26628 * 275.37518 * 20 19 18 22 22 N 1.45899 * 103.50576 * 352.18922 * 15 13 12 23 23 C 1.33907 * 107.10191 * 10.34201 * 22 15 13 24 24 O 1.21546 * 124.20500 * 170.54841 * 23 22 15 25 25 H 0.96995 * 120.00464 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47452 * 59.99386 * 9 7 2 27 27 H 1.09001 * 109.47131 * 299.99290 * 9 7 2 28 28 H 1.09000 * 109.47255 * 59.99560 * 10 9 7 29 29 H 1.09001 * 109.46817 * 299.99778 * 10 9 7 30 30 H 1.08994 * 109.46999 * 59.99821 * 11 10 9 31 31 H 1.08998 * 109.46722 * 299.99399 * 11 10 9 32 32 H 1.09001 * 109.95323 * 327.36747 * 17 15 13 33 33 H 1.08999 * 109.95025 * 88.54831 * 17 15 13 34 34 H 1.09008 * 109.82885 * 42.33843 * 18 17 15 35 35 H 1.08999 * 109.83194 * 163.21879 * 18 17 15 36 36 H 1.09002 * 108.22316 * 303.71459 * 19 18 17 37 37 H 1.08994 * 108.08000 * 187.21629 * 19 18 17 38 38 H 1.09002 * 108.90867 * 154.68361 * 20 19 18 39 39 H 1.09000 * 108.90647 * 36.06694 * 20 19 18 40 40 H 1.09004 * 109.96793 * 201.34689 * 21 20 19 41 41 H 1.09004 * 109.97153 * 322.56867 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 2.9265 -6.6791 -1.1156 14 8 2.7124 -6.3613 -2.2658 15 6 3.8036 -7.8085 -0.6223 16 1 3.3387 -8.7675 -0.8507 17 6 5.2005 -7.7350 -1.2295 18 6 5.7495 -9.1829 -1.2789 19 6 6.1883 -9.5500 0.1149 20 6 5.0997 -9.6412 1.1531 21 6 4.7679 -8.2849 1.7622 22 7 3.8412 -7.6048 0.8220 23 6 2.9229 -6.6745 1.1125 24 8 2.5768 -6.3851 2.2411 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8885 31 1 0.8541 -5.0446 0.8915 32 1 5.1468 -7.3230 -2.2373 33 1 5.8442 -7.1129 -0.6076 34 1 4.9667 -9.8640 -1.6130 35 1 6.5988 -9.2333 -1.9602 36 1 6.9149 -8.8095 0.4496 37 1 6.6933 -10.5147 0.0675 38 1 5.4236 -10.3150 1.9463 39 1 4.2019 -10.0490 0.6885 40 1 4.2840 -8.4197 2.7296 41 1 5.6782 -7.6971 1.8803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365312228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:16 Heat of formation + Delta-G solvation = -58.186159 kcal Electronic energy + Delta-G solvation = -22478.318164 eV Core-core repulsion = 19165.439292 eV Total energy + Delta-G solvation = -3312.878872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.45887 -38.51388 -38.25098 -35.77304 -34.89084 -33.39459 -32.80942 -31.24260 -27.79822 -27.41041 -25.64797 -23.42289 -23.37742 -21.25228 -20.74603 -20.56448 -19.99836 -17.47570 -16.94918 -16.43738 -16.27080 -15.82105 -15.24893 -14.97323 -14.54271 -14.47290 -14.34234 -14.06827 -14.00681 -13.88550 -12.91889 -12.61026 -12.49554 -12.37144 -12.07679 -11.71785 -11.47244 -11.25072 -11.21796 -11.15993 -10.91550 -10.84212 -10.67679 -10.42510 -10.01756 -9.75482 -9.71764 -9.29291 -9.09547 -8.90011 -8.33026 -5.97825 -3.99891 1.71146 2.16604 2.99802 3.12829 3.33640 3.40657 3.45380 3.96930 4.21258 4.29759 4.48598 4.49042 4.53334 4.67766 4.86770 5.04706 5.15972 5.23204 5.29603 5.38197 5.45073 5.51256 5.58015 5.61024 5.71229 5.74076 5.79713 5.80827 5.91009 5.96079 6.05451 6.36038 6.59940 6.78596 7.04124 7.27487 7.49420 7.67134 7.80528 8.00887 8.20324 8.43777 9.06135 9.63844 11.13705 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027817 B = 0.003692 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.349231 B = 7583.158891 C = 7707.804785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.576 5.576 13 C 0.521 3.479 14 O -0.466 6.466 15 C 0.095 3.905 16 H 0.118 0.882 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.134 4.134 21 C 0.156 3.844 22 N -0.629 5.629 23 C 0.701 3.299 24 O -0.537 6.537 25 H 0.260 0.740 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.953 -23.333 -0.314 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.005 4.005 12 N -0.321 5.321 13 C 0.307 3.693 14 O -0.336 6.336 15 C -0.013 4.013 16 H 0.135 0.865 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.172 4.172 21 C 0.036 3.964 22 N -0.370 5.370 23 C 0.404 3.596 24 O -0.410 6.410 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.497 -22.897 -0.211 25.622 hybrid contribution 0.360 1.012 0.011 1.074 sum 11.857 -21.885 -0.199 24.892 Atomic orbital electron populations 1.69968 1.06028 1.26524 1.50910 1.25017 0.94868 0.99267 0.95307 0.86520 0.80097 0.83734 0.77568 1.19776 1.20982 1.20979 1.21225 0.93044 0.90888 1.50505 0.92677 1.19037 0.93804 0.90867 0.97558 1.21993 0.99898 0.93136 1.01006 1.22071 0.90348 0.83937 1.04122 1.46956 1.43714 1.34016 1.07464 1.20902 0.80293 0.82972 0.85112 1.90797 1.59440 1.65605 1.17718 1.21841 0.98293 0.99204 0.81965 0.86482 1.22164 0.92869 0.98525 1.02383 1.21624 1.01558 0.95272 0.96847 1.20791 0.98430 1.02306 0.94789 1.21299 1.00062 0.96562 0.99243 1.21758 0.91601 0.91609 0.91446 1.48022 1.38520 1.43259 1.07152 1.15904 0.79811 0.79386 0.84531 1.90979 1.63416 1.66546 1.20094 0.93026 0.96231 0.96155 0.92766 0.92891 0.89237 0.88949 0.89184 0.89874 0.91200 0.90633 0.91840 0.91974 0.89947 0.90904 0.89042 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.66 4.97 -27.88 -0.14 0.53 16 10 C -0.12 -2.69 5.48 -26.73 -0.15 -2.84 16 11 C 0.11 2.14 5.74 -4.04 -0.02 2.12 16 12 N -0.58 -9.51 2.63 -120.77 -0.32 -9.82 16 13 C 0.52 7.68 7.67 -10.53 -0.08 7.60 16 14 O -0.47 -8.07 17.63 5.60 0.10 -7.97 16 15 C 0.09 0.97 2.64 -69.39 -0.18 0.79 16 16 H 0.12 0.96 6.89 -51.93 -0.36 0.60 16 17 C -0.12 -1.00 5.35 -25.97 -0.14 -1.14 16 18 C -0.12 -0.64 5.89 -26.88 -0.16 -0.80 16 19 C -0.13 -0.62 5.05 -29.05 -0.15 -0.77 16 20 C -0.13 -0.72 5.29 -28.22 -0.15 -0.87 16 21 C 0.16 1.27 6.63 -3.28 -0.02 1.25 16 22 N -0.63 -7.22 3.06 -172.75 -0.53 -7.75 16 23 C 0.70 11.21 8.32 -88.12 -0.73 10.48 16 24 O -0.54 -10.40 17.34 5.32 0.09 -10.31 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.09 1.61 8.04 -51.93 -0.42 1.19 16 31 H 0.09 1.72 7.85 -51.93 -0.41 1.32 16 32 H 0.09 0.81 7.81 -51.93 -0.41 0.40 16 33 H 0.08 0.72 7.73 -51.93 -0.40 0.32 16 34 H 0.07 0.35 7.57 -51.92 -0.39 -0.04 16 35 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.33 7.47 -51.93 -0.39 -0.06 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.42 7.18 -51.93 -0.37 0.05 16 40 H 0.09 0.78 8.13 -51.93 -0.42 0.35 16 41 H 0.07 0.55 7.73 -51.93 -0.40 0.14 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -34.43 331.83 -8.74 -43.17 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -6.47 Total: -5.27 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -2.33 Total: 2.43 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.11 Total: -44.24 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.19 Total: -18.28 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.43 -8.74 -43.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365312228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.017 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds