Wall clock time and date at job start Tue Mar 31 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99743 * 2 1 4 4 H 1.48497 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 299.99501 * 3 2 1 6 6 H 1.48500 * 109.47417 * 59.99655 * 3 2 1 7 7 C 1.37879 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99558 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47047 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47062 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46874 * 180.02562 * 11 10 9 13 13 C 1.35179 * 124.22485 * 269.99493 * 12 11 10 14 14 O 1.21232 * 127.40722 * 2.63319 * 13 12 11 15 15 C 1.51268 * 105.18046 * 182.64978 * 13 12 11 16 16 H 1.09005 * 109.94988 * 109.61348 * 15 13 12 17 17 C 1.52492 * 111.42466 * 232.43696 * 15 13 12 18 18 C 1.54934 * 106.99222 * 207.99706 * 17 15 13 19 19 C 1.50667 * 107.54186 * 282.76208 * 18 17 15 20 20 C 1.50710 * 116.20742 * 65.52008 * 19 18 17 21 21 C 1.52331 * 112.26628 * 275.37518 * 20 19 18 22 22 N 1.45899 * 103.50576 * 352.18922 * 15 13 12 23 23 C 1.33907 * 107.10191 * 10.34201 * 22 15 13 24 24 O 1.21546 * 124.20500 * 170.54841 * 23 22 15 25 25 H 0.96995 * 120.00464 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47452 * 59.99386 * 9 7 2 27 27 H 1.09001 * 109.47131 * 299.99290 * 9 7 2 28 28 H 1.09000 * 109.47255 * 59.99560 * 10 9 7 29 29 H 1.09001 * 109.46817 * 299.99778 * 10 9 7 30 30 H 1.08994 * 109.46999 * 59.99821 * 11 10 9 31 31 H 1.08998 * 109.46722 * 299.99399 * 11 10 9 32 32 H 1.09001 * 109.95323 * 327.36747 * 17 15 13 33 33 H 1.08999 * 109.95025 * 88.54831 * 17 15 13 34 34 H 1.09008 * 109.82885 * 42.33843 * 18 17 15 35 35 H 1.08999 * 109.83194 * 163.21879 * 18 17 15 36 36 H 1.09002 * 108.22316 * 303.71459 * 19 18 17 37 37 H 1.08994 * 108.08000 * 187.21629 * 19 18 17 38 38 H 1.09002 * 108.90867 * 154.68361 * 20 19 18 39 39 H 1.09000 * 108.90647 * 36.06694 * 20 19 18 40 40 H 1.09004 * 109.96793 * 201.34689 * 21 20 19 41 41 H 1.09004 * 109.97153 * 322.56867 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3963 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 2.9265 -6.6791 -1.1156 14 8 2.7124 -6.3613 -2.2658 15 6 3.8036 -7.8085 -0.6223 16 1 3.3387 -8.7675 -0.8507 17 6 5.2005 -7.7350 -1.2295 18 6 5.7495 -9.1829 -1.2789 19 6 6.1883 -9.5500 0.1149 20 6 5.0997 -9.6412 1.1531 21 6 4.7679 -8.2849 1.7622 22 7 3.8412 -7.6048 0.8220 23 6 2.9229 -6.6745 1.1125 24 8 2.5768 -6.3851 2.2411 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8721 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8534 -5.0451 -0.8885 31 1 0.8541 -5.0446 0.8915 32 1 5.1468 -7.3230 -2.2373 33 1 5.8442 -7.1129 -0.6076 34 1 4.9667 -9.8640 -1.6130 35 1 6.5988 -9.2333 -1.9602 36 1 6.9149 -8.8095 0.4496 37 1 6.6933 -10.5147 0.0675 38 1 5.4236 -10.3150 1.9463 39 1 4.2019 -10.0490 0.6885 40 1 4.2840 -8.4197 2.7296 41 1 5.6782 -7.6971 1.8803 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365312228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:15 Heat of formation + Delta-G solvation = -79.635451 kcal Electronic energy + Delta-G solvation = -22479.248276 eV Core-core repulsion = 19165.439292 eV Total energy + Delta-G solvation = -3313.808983 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.60644 -39.75750 -39.09907 -37.18189 -36.30033 -34.94425 -33.76689 -32.89328 -29.25108 -28.41170 -26.83773 -25.09836 -24.43372 -22.54177 -21.88042 -21.38404 -21.24292 -18.83795 -18.27310 -18.04561 -17.55542 -16.89344 -16.55865 -16.21745 -15.90251 -15.74171 -15.49768 -15.19406 -15.03736 -14.77220 -14.42592 -14.05904 -13.49524 -13.38565 -13.24165 -13.09180 -12.95711 -12.75032 -12.57542 -12.36102 -12.17130 -11.79334 -11.71137 -11.66655 -11.56097 -11.39974 -11.27432 -11.04606 -10.74960 -10.60162 -9.98412 -8.24041 -6.35638 0.52675 1.03506 1.37575 1.38406 1.51810 1.87212 1.96402 2.38575 2.92837 3.08983 3.51745 3.70847 3.87237 3.92816 3.99991 4.04994 4.09718 4.27198 4.29062 4.38841 4.47606 4.55833 4.66563 4.71947 4.77876 4.94715 4.97259 5.02244 5.03377 5.16690 5.20897 5.31805 5.36913 5.41757 5.46427 5.54500 5.60998 5.76534 6.08897 6.17543 6.30443 6.78698 6.97166 7.33289 8.88187 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027817 B = 0.003692 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.349231 B = 7583.158891 C = 7707.804785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.103 4.103 11 C 0.125 3.875 12 N -0.585 5.585 13 C 0.515 3.485 14 O -0.496 6.496 15 C 0.106 3.894 16 H 0.151 0.849 17 C -0.119 4.119 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.126 4.126 21 C 0.146 3.854 22 N -0.613 5.613 23 C 0.694 3.306 24 O -0.579 6.579 25 H 0.266 0.734 26 H 0.001 0.999 27 H -0.001 1.001 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.167 -24.974 -0.619 28.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.141 4.141 11 C 0.003 3.997 12 N -0.330 5.330 13 C 0.304 3.696 14 O -0.367 6.367 15 C 0.000 4.000 16 H 0.168 0.832 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.163 4.163 20 C -0.164 4.164 21 C 0.028 3.972 22 N -0.352 5.352 23 C 0.396 3.604 24 O -0.456 6.456 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 13.759 -24.595 -0.528 28.187 hybrid contribution -0.333 1.487 0.101 1.528 sum 13.426 -23.108 -0.427 26.728 Atomic orbital electron populations 1.70089 1.07715 1.27908 1.51297 1.25985 0.95859 1.03383 0.94482 0.85357 0.78883 0.78532 0.78023 1.18862 1.19977 1.20082 1.21622 0.93358 0.92330 1.51130 0.92629 1.18900 0.94103 0.92277 0.95525 1.21678 0.98724 0.93516 1.00197 1.21685 0.90399 0.83406 1.04166 1.46964 1.43705 1.33604 1.08744 1.21692 0.80168 0.83532 0.84255 1.90777 1.60548 1.66688 1.18691 1.22076 0.98842 0.98227 0.80888 0.83188 1.22209 0.91171 1.00809 1.01505 1.21636 1.02253 0.92986 0.97712 1.20790 0.98180 1.03297 0.94049 1.21290 1.00388 0.94700 1.00020 1.22143 0.90924 0.93129 0.90964 1.48285 1.37193 1.41533 1.08225 1.16101 0.80498 0.80109 0.83663 1.90944 1.65013 1.68183 1.21466 0.92561 0.98071 0.98300 0.93664 0.93302 0.88824 0.89338 0.89866 0.90359 0.90063 0.89386 0.91962 0.90133 0.87767 0.90760 0.89486 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.55 -32.74 9.11 25.60 0.23 -32.51 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.10 -4.71 5.48 30.60 0.17 -4.54 16 11 C 0.12 4.83 5.74 86.38 0.50 5.33 16 12 N -0.59 -19.58 2.63 -772.74 -2.03 -21.62 16 13 C 0.51 14.99 7.67 87.77 0.67 15.67 16 14 O -0.50 -17.18 17.63 -2.88 -0.05 -17.23 16 15 C 0.11 1.98 2.64 44.37 0.12 2.09 16 16 H 0.15 1.94 6.89 -2.38 -0.02 1.92 16 17 C -0.12 -1.68 5.35 31.09 0.17 -1.51 16 18 C -0.11 -0.79 5.89 30.50 0.18 -0.61 16 19 C -0.13 -0.73 5.05 29.09 0.15 -0.59 16 20 C -0.13 -0.90 5.29 29.63 0.16 -0.75 16 21 C 0.15 2.08 6.63 85.77 0.57 2.65 16 22 N -0.61 -13.22 3.06 -819.22 -2.51 -15.73 16 23 C 0.69 22.27 8.32 179.48 1.49 23.76 16 24 O -0.58 -22.99 17.34 -3.86 -0.07 -23.05 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 28 H 0.04 2.12 8.14 -2.39 -0.02 2.11 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.09 3.52 8.04 -2.39 -0.02 3.50 16 31 H 0.09 3.48 7.85 -2.39 -0.02 3.46 16 32 H 0.08 1.35 7.81 -2.39 -0.02 1.33 16 33 H 0.08 1.21 7.73 -2.39 -0.02 1.19 16 34 H 0.08 0.45 7.57 -2.38 -0.02 0.44 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.42 7.47 -2.39 -0.02 0.40 16 37 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.07 0.56 7.18 -2.39 -0.02 0.54 16 40 H 0.09 1.36 8.13 -2.38 -0.02 1.34 16 41 H 0.08 1.05 7.73 -2.38 -0.02 1.03 16 Total: -1.00 -76.56 331.83 3.67 -72.89 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.01 Total: 3.37 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 5.01 Total: 11.31 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.25 Total: -95.05 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.12 Total: -40.29 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -76.56 3.67 -72.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365312228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.750 kcal (2) G-P(sol) polarization free energy of solvation -76.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds