Wall clock time and date at job start Tue Mar 31 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48510 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47123 * 300.00156 * 3 2 1 6 6 H 1.48499 * 109.47052 * 60.00222 * 3 2 1 7 7 C 1.37879 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00050 * 359.97438 * 7 2 1 10 10 O 1.42890 * 113.41210 * 46.79739 * 9 7 2 11 11 C 1.53493 * 114.20771 * 180.02562 * 9 7 2 12 12 N 1.47061 * 87.98750 * 139.65378 * 11 9 7 13 13 C 1.34782 * 136.06042 * 152.84382 * 12 11 9 14 14 O 1.21280 * 119.99579 * 4.91689 * 13 12 11 15 15 C 1.50691 * 120.00183 * 184.91660 * 13 12 11 16 16 C 1.54132 * 111.33455 * 152.59908 * 15 13 12 17 17 C 1.55425 * 102.91266 * 262.23272 * 16 15 13 18 18 C 1.54828 * 101.53781 * 323.85611 * 17 16 15 19 19 N 1.47858 * 110.77457 * 33.33254 * 15 13 12 20 20 C 1.47955 * 108.37249 * 239.67401 * 19 15 13 21 21 C 1.54833 * 105.06688 * 22.81894 * 20 19 15 22 22 C 1.54140 * 110.74841 * 274.44901 * 15 13 12 23 23 C 1.47069 * 87.88544 * 333.09599 * 12 11 9 24 24 H 0.96998 * 119.99547 * 359.97438 * 1 2 3 25 25 H 0.96706 * 114.00566 * 313.20056 * 10 9 7 26 26 H 1.09000 * 113.46948 * 24.87075 * 11 9 7 27 27 H 1.09001 * 113.46614 * 254.43319 * 11 9 7 28 28 H 1.09002 * 110.73030 * 20.58610 * 16 15 13 29 29 H 1.09002 * 110.73535 * 143.70099 * 16 15 13 30 30 H 1.09003 * 111.09384 * 205.78157 * 17 16 15 31 31 H 1.08999 * 111.00066 * 81.89427 * 17 16 15 32 32 H 1.09000 * 110.32576 * 277.71893 * 18 17 16 33 33 H 1.09002 * 110.32378 * 155.61604 * 18 17 16 34 34 H 1.09004 * 110.32222 * 141.71489 * 20 19 15 35 35 H 1.08999 * 110.32638 * 263.81540 * 20 19 15 36 36 H 1.08997 * 110.99514 * 81.41464 * 21 20 19 37 37 H 1.08995 * 110.98973 * 205.23349 * 21 20 19 38 38 H 1.09007 * 110.72401 * 339.06937 * 22 15 13 39 39 H 1.08998 * 110.72911 * 215.77158 * 22 15 13 40 40 H 1.08996 * 113.46699 * 141.67850 * 23 12 11 41 41 H 1.08991 * 113.46839 * 272.12108 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.1893 -2.5419 -0.9560 11 6 2.1486 -3.7443 -0.0005 12 7 1.2098 -4.3575 0.9510 13 6 0.8344 -5.6114 1.2725 14 8 1.3910 -6.5606 0.7624 15 6 -0.2768 -5.8340 2.2657 16 6 -0.9985 -7.1715 2.0093 17 6 -2.2471 -6.7410 1.1899 18 6 -2.5953 -5.3828 1.8467 19 7 -1.2908 -4.7624 2.1671 20 6 -1.3789 -4.0816 3.4777 21 6 -0.0233 -4.3646 4.1702 22 6 0.2679 -5.8168 3.7075 23 6 0.8561 -3.0001 1.3929 24 1 -0.4849 0.8401 0.0004 25 1 -0.3744 -1.7561 -0.9530 26 1 3.1383 -3.5659 0.4200 27 1 2.1848 -4.2533 -0.9637 28 1 -0.3687 -7.8445 1.4275 29 1 -1.2929 -7.6376 2.9496 30 1 -3.0620 -7.4544 1.3127 31 1 -1.9979 -6.6129 0.1365 32 1 -3.1737 -5.5397 2.7571 33 1 -3.1512 -4.7564 1.1490 34 1 -1.5164 -3.0092 3.3389 35 1 -2.1991 -4.4949 4.0647 36 1 0.7470 -3.6799 3.8153 37 1 -0.1203 -4.3125 5.2546 38 1 1.3393 -6.0174 3.7175 39 1 -0.2660 -6.5346 4.3302 40 1 -0.2045 -2.8776 1.6122 41 1 1.4980 -2.6215 2.1883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365603928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:28 Heat of formation + Delta-G solvation = -29.711635 kcal Electronic energy + Delta-G solvation = -23939.120424 eV Core-core repulsion = 20627.476300 eV Total energy + Delta-G solvation = -3311.644124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67374 -38.65642 -36.98872 -34.05283 -33.62528 -32.08038 -31.16536 -29.01831 -27.63912 -25.45466 -25.24998 -24.81933 -21.79959 -21.24969 -20.61529 -19.39511 -17.97304 -17.32816 -16.31810 -16.00408 -15.42607 -15.06654 -14.54941 -14.49834 -14.11131 -13.93871 -13.52814 -13.12501 -12.77605 -12.68958 -12.52909 -12.17876 -11.79752 -11.67593 -11.49374 -11.42380 -11.32678 -11.05899 -11.00011 -10.90554 -10.72152 -10.68719 -10.38896 -10.27925 -10.06351 -9.53311 -9.09791 -8.68841 -8.35933 -7.98341 -7.63615 -6.31543 -4.41342 3.16735 3.23107 3.26480 3.30475 3.72839 4.11319 4.23658 4.60531 4.63615 4.86287 4.91616 5.05800 5.15433 5.21640 5.23097 5.45473 5.56058 5.65609 5.70235 5.80656 5.85540 5.91902 5.95544 6.05000 6.12097 6.13894 6.23209 6.29067 6.31033 6.38475 6.57225 6.69926 6.83335 7.00217 7.09804 7.16379 7.26669 7.71773 7.92988 8.60867 8.71491 8.96933 9.29548 9.64536 10.74373 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.005955 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.190387 B = 4700.551109 C = 4903.523985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.070 0.930 9 C 0.239 3.761 10 O -0.569 6.569 11 C 0.102 3.898 12 N -0.612 5.612 13 C 0.561 3.439 14 O -0.575 6.575 15 C 0.078 3.922 16 C -0.124 4.124 17 C -0.131 4.131 18 C 0.035 3.965 19 N -0.489 5.489 20 C 0.034 3.966 21 C -0.136 4.136 22 C -0.124 4.124 23 C 0.078 3.922 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -6.999 8.483 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.197 3.803 10 O -0.382 6.382 11 C -0.021 4.021 12 N -0.342 5.342 13 C 0.349 3.651 14 O -0.456 6.456 15 C -0.015 4.015 16 C -0.163 4.163 17 C -0.169 4.169 18 C -0.092 4.092 19 N -0.213 5.213 20 C -0.094 4.094 21 C -0.174 4.174 22 C -0.163 4.163 23 C -0.045 4.045 24 H 0.082 0.918 25 H 0.248 0.752 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.303 -7.735 7.708 11.736 hybrid contribution -0.061 0.898 0.899 1.272 sum -4.363 -6.836 8.606 11.825 Atomic orbital electron populations 1.69298 1.06068 1.27790 1.50432 1.25049 0.94991 0.99687 0.93276 0.86327 0.80116 0.82540 0.77788 1.19519 1.20703 1.20758 1.21498 0.93836 0.90002 1.51677 0.91184 1.19474 0.85314 0.90531 0.84966 1.86039 1.44854 1.48166 1.59141 1.23364 0.93883 0.92670 0.92160 1.49418 1.40800 1.04888 1.39077 1.19385 0.83106 0.81089 0.81514 1.90604 1.58031 1.41071 1.55911 1.22301 0.92570 0.91959 0.94665 1.22828 0.96865 0.95927 1.00669 1.22804 0.97218 0.96254 1.00609 1.23287 0.91363 0.94973 0.99614 1.65434 1.04290 1.23088 1.28489 1.23323 0.96581 1.00845 0.88608 1.22893 0.98147 0.96293 1.00066 1.22829 1.02008 0.97774 0.93691 1.24136 1.01918 0.77255 1.01217 0.91829 0.75193 0.90168 0.91966 0.89121 0.90988 0.90867 0.90502 0.93381 0.89832 0.89381 0.93370 0.89835 0.90741 0.90686 0.90604 0.89211 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.75 11.01 55.43 0.61 -22.14 16 2 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 3 Si 0.91 19.53 29.54 -169.99 -5.02 14.51 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.53 -13.51 8.69 -34.44 -0.30 -13.81 16 8 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 9 C 0.24 5.87 1.57 -91.39 -0.14 5.73 16 10 O -0.57 -15.11 13.53 -35.23 -0.48 -15.58 16 11 C 0.10 2.33 8.04 -8.51 -0.07 2.26 16 12 N -0.61 -13.46 3.64 -185.39 -0.67 -14.14 16 13 C 0.56 11.92 6.92 -10.99 -0.08 11.84 16 14 O -0.58 -13.68 16.53 5.56 0.09 -13.59 16 15 C 0.08 1.29 0.86 -131.04 -0.11 1.18 16 16 C -0.12 -1.81 6.01 -24.85 -0.15 -1.96 16 17 C -0.13 -1.77 7.09 -24.48 -0.17 -1.95 16 18 C 0.04 0.49 6.71 -2.28 -0.02 0.48 16 19 N -0.49 -7.92 3.40 -214.08 -0.73 -8.65 16 20 C 0.03 0.47 5.77 -2.28 -0.01 0.46 16 21 C -0.14 -1.80 6.69 -24.62 -0.16 -1.96 16 22 C -0.12 -1.73 6.03 -24.99 -0.15 -1.88 16 23 C 0.08 1.70 5.64 -8.64 -0.05 1.65 16 24 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 25 H 0.39 10.49 6.33 45.56 0.29 10.78 16 26 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 27 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.09 1.48 6.93 -51.93 -0.36 1.12 16 29 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.56 7.08 -51.93 -0.37 0.20 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.09 1.29 7.74 -51.93 -0.40 0.89 16 35 H 0.05 0.57 7.08 -51.93 -0.37 0.20 16 36 H 0.08 1.26 6.16 -51.93 -0.32 0.94 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.10 7.85 -51.92 -0.41 0.69 16 39 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16 40 H 0.09 2.00 5.38 -51.93 -0.28 1.72 16 41 H 0.07 1.41 7.38 -51.93 -0.38 1.03 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -28.76 315.87 -8.39 -37.15 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -5.44 Total: 13.93 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.51 Total: 3.75 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.79 Total: -44.93 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.38 Total: -29.18 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.76 -8.39 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365603928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.433 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds