Wall clock time and date at job start Tue Mar 31 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00299 * 2 1 4 4 H 1.48510 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47123 * 300.00156 * 3 2 1 6 6 H 1.48499 * 109.47052 * 60.00222 * 3 2 1 7 7 C 1.37879 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00050 * 359.97438 * 7 2 1 10 10 O 1.42890 * 113.41210 * 46.79739 * 9 7 2 11 11 C 1.53493 * 114.20771 * 180.02562 * 9 7 2 12 12 N 1.47061 * 87.98750 * 139.65378 * 11 9 7 13 13 C 1.34782 * 136.06042 * 152.84382 * 12 11 9 14 14 O 1.21280 * 119.99579 * 4.91689 * 13 12 11 15 15 C 1.50691 * 120.00183 * 184.91660 * 13 12 11 16 16 C 1.54132 * 111.33455 * 152.59908 * 15 13 12 17 17 C 1.55425 * 102.91266 * 262.23272 * 16 15 13 18 18 C 1.54828 * 101.53781 * 323.85611 * 17 16 15 19 19 N 1.47858 * 110.77457 * 33.33254 * 15 13 12 20 20 C 1.47955 * 108.37249 * 239.67401 * 19 15 13 21 21 C 1.54833 * 105.06688 * 22.81894 * 20 19 15 22 22 C 1.54140 * 110.74841 * 274.44901 * 15 13 12 23 23 C 1.47069 * 87.88544 * 333.09599 * 12 11 9 24 24 H 0.96998 * 119.99547 * 359.97438 * 1 2 3 25 25 H 0.96706 * 114.00566 * 313.20056 * 10 9 7 26 26 H 1.09000 * 113.46948 * 24.87075 * 11 9 7 27 27 H 1.09001 * 113.46614 * 254.43319 * 11 9 7 28 28 H 1.09002 * 110.73030 * 20.58610 * 16 15 13 29 29 H 1.09002 * 110.73535 * 143.70099 * 16 15 13 30 30 H 1.09003 * 111.09384 * 205.78157 * 17 16 15 31 31 H 1.08999 * 111.00066 * 81.89427 * 17 16 15 32 32 H 1.09000 * 110.32576 * 277.71893 * 18 17 16 33 33 H 1.09002 * 110.32378 * 155.61604 * 18 17 16 34 34 H 1.09004 * 110.32222 * 141.71489 * 20 19 15 35 35 H 1.08999 * 110.32638 * 263.81540 * 20 19 15 36 36 H 1.08997 * 110.99514 * 81.41464 * 21 20 19 37 37 H 1.08995 * 110.98973 * 205.23349 * 21 20 19 38 38 H 1.09007 * 110.72401 * 339.06937 * 22 15 13 39 39 H 1.08998 * 110.72911 * 215.77158 * 22 15 13 40 40 H 1.08996 * 113.46699 * 141.67850 * 23 12 11 41 41 H 1.08991 * 113.46839 * 272.12108 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.1893 -2.5419 -0.9560 11 6 2.1486 -3.7443 -0.0005 12 7 1.2098 -4.3575 0.9510 13 6 0.8344 -5.6114 1.2725 14 8 1.3910 -6.5606 0.7624 15 6 -0.2768 -5.8340 2.2657 16 6 -0.9985 -7.1715 2.0093 17 6 -2.2471 -6.7410 1.1899 18 6 -2.5953 -5.3828 1.8467 19 7 -1.2908 -4.7624 2.1671 20 6 -1.3789 -4.0816 3.4777 21 6 -0.0233 -4.3646 4.1702 22 6 0.2679 -5.8168 3.7075 23 6 0.8561 -3.0001 1.3929 24 1 -0.4849 0.8401 0.0004 25 1 -0.3744 -1.7561 -0.9530 26 1 3.1383 -3.5659 0.4200 27 1 2.1848 -4.2533 -0.9637 28 1 -0.3687 -7.8445 1.4275 29 1 -1.2929 -7.6376 2.9496 30 1 -3.0620 -7.4544 1.3127 31 1 -1.9979 -6.6129 0.1365 32 1 -3.1737 -5.5397 2.7571 33 1 -3.1512 -4.7564 1.1490 34 1 -1.5164 -3.0092 3.3389 35 1 -2.1991 -4.4949 4.0647 36 1 0.7470 -3.6799 3.8153 37 1 -0.1203 -4.3125 5.2546 38 1 1.3393 -6.0174 3.7175 39 1 -0.2660 -6.5346 4.3302 40 1 -0.2045 -2.8776 1.6122 41 1 1.4980 -2.6215 2.1883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365603928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:28 Heat of formation + Delta-G solvation = -50.295373 kcal Electronic energy + Delta-G solvation = -23940.013002 eV Core-core repulsion = 20627.476300 eV Total energy + Delta-G solvation = -3312.536702 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.05017 -40.30503 -38.71049 -35.84569 -34.86071 -34.07094 -32.35517 -30.65079 -29.02159 -27.10722 -26.82872 -26.31472 -23.22209 -22.48212 -21.68226 -21.12102 -19.64771 -19.07564 -17.87356 -17.46279 -16.95094 -16.81316 -16.13915 -15.95921 -15.78169 -15.20306 -14.83309 -14.60317 -14.45544 -14.07855 -14.06162 -13.65817 -13.36950 -13.27157 -13.08483 -12.76960 -12.66647 -12.50985 -12.45390 -12.21018 -12.12359 -12.02401 -11.89095 -11.76426 -11.36076 -11.30893 -10.85991 -10.59810 -10.14911 -9.46141 -9.29056 -8.22775 -6.39971 1.46043 1.50330 1.60252 1.63493 2.08354 2.42685 2.94674 2.98347 3.41091 3.48185 3.73320 3.74934 3.94024 3.99393 4.08494 4.19533 4.28963 4.41645 4.48767 4.55615 4.61244 4.64260 4.67277 4.80039 4.85810 4.90049 4.94296 4.96094 5.03398 5.05139 5.13285 5.22174 5.24949 5.31847 5.38021 5.77033 5.84271 5.97383 6.08273 6.64666 6.99991 7.24386 7.34388 7.57013 8.82969 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.005955 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.190387 B = 4700.551109 C = 4903.523985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.034 3.966 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.220 3.780 10 O -0.585 6.585 11 C 0.098 3.902 12 N -0.615 5.615 13 C 0.548 3.452 14 O -0.609 6.609 15 C 0.077 3.923 16 C -0.120 4.120 17 C -0.127 4.127 18 C 0.037 3.963 19 N -0.522 5.522 20 C 0.036 3.964 21 C -0.132 4.132 22 C -0.118 4.118 23 C 0.102 3.898 24 H 0.276 0.724 25 H 0.387 0.613 26 H 0.096 0.904 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 -7.043 10.827 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.166 4.166 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.178 3.822 10 O -0.397 6.397 11 C -0.025 4.025 12 N -0.345 5.345 13 C 0.338 3.662 14 O -0.492 6.492 15 C -0.016 4.016 16 C -0.159 4.159 17 C -0.165 4.165 18 C -0.090 4.090 19 N -0.247 5.247 20 C -0.091 4.091 21 C -0.169 4.169 22 C -0.157 4.157 23 C -0.020 4.020 24 H 0.086 0.914 25 H 0.243 0.757 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.300 -7.783 10.063 13.782 hybrid contribution 0.247 0.894 0.094 0.932 sum -5.053 -6.890 10.157 13.273 Atomic orbital electron populations 1.69354 1.07035 1.28698 1.50237 1.25733 0.95772 1.02459 0.92678 0.85343 0.78868 0.78641 0.77753 1.19344 1.20764 1.19988 1.21678 0.93957 0.90791 1.52761 0.91263 1.19745 0.85290 0.91087 0.86047 1.86024 1.45443 1.48008 1.60271 1.23378 0.94802 0.92254 0.92113 1.49514 1.40660 1.05458 1.38897 1.20509 0.83800 0.80046 0.81810 1.90570 1.59433 1.41813 1.57401 1.22271 0.91428 0.93177 0.94678 1.22859 0.96414 0.94408 1.02172 1.22789 0.98002 0.97201 0.98500 1.23314 0.90522 0.94425 1.00765 1.65228 1.05294 1.23687 1.30470 1.23333 0.97908 0.99919 0.87925 1.22873 0.97006 0.95139 1.01917 1.22859 1.01540 0.99117 0.92141 1.23803 1.01667 0.76882 0.99684 0.91442 0.75704 0.88627 0.93621 0.91543 0.87260 0.87437 0.93827 0.90083 0.91043 0.90891 0.90278 0.92398 0.87465 0.92007 0.87138 0.89537 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.47 11.01 21.45 0.24 -46.23 16 2 C 0.03 1.70 5.40 84.66 0.46 2.16 16 3 Si 0.97 39.73 29.54 68.60 2.03 41.75 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.55 -28.42 8.69 25.60 0.22 -28.20 16 8 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.22 11.04 1.57 -11.29 -0.02 11.02 16 10 O -0.58 -32.06 13.53 -148.98 -2.02 -34.08 16 11 C 0.10 4.61 8.04 83.18 0.67 5.28 16 12 N -0.62 -27.67 3.64 -859.32 -3.13 -30.80 16 13 C 0.55 23.61 6.92 87.65 0.61 24.22 16 14 O -0.61 -29.80 16.53 -3.03 -0.05 -29.85 16 15 C 0.08 2.47 0.86 3.36 0.00 2.47 16 16 C -0.12 -3.24 6.01 31.81 0.19 -3.05 16 17 C -0.13 -3.22 7.09 32.05 0.23 -2.99 16 18 C 0.04 0.94 6.71 86.72 0.58 1.52 16 19 N -0.52 -16.15 3.40 -831.21 -2.83 -18.98 16 20 C 0.04 0.90 5.77 86.73 0.50 1.40 16 21 C -0.13 -3.12 6.69 31.96 0.21 -2.90 16 22 C -0.12 -2.96 6.03 31.72 0.19 -2.77 16 23 C 0.10 4.55 5.64 83.09 0.47 5.02 16 24 H 0.28 13.19 8.31 -92.71 -0.77 12.42 16 25 H 0.39 21.40 6.33 -74.05 -0.47 20.93 16 26 H 0.10 4.14 8.10 -2.39 -0.02 4.12 16 27 H 0.05 2.25 8.14 -2.39 -0.02 2.24 16 28 H 0.07 2.13 6.93 -2.39 -0.02 2.12 16 29 H 0.11 2.13 7.30 -2.39 -0.02 2.12 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.53 7.08 -2.39 -0.02 1.52 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.03 7.74 -2.39 -0.02 2.02 16 35 H 0.08 1.49 7.08 -2.39 -0.02 1.47 16 36 H 0.06 1.67 6.16 -2.39 -0.01 1.65 16 37 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.72 7.85 -2.38 -0.02 1.70 16 39 H 0.11 2.03 7.30 -2.39 -0.02 2.01 16 40 H 0.09 3.90 5.38 -2.39 -0.01 3.89 16 41 H 0.07 3.12 7.38 -2.39 -0.02 3.10 16 Total: -1.00 -63.50 315.87 -0.87 -64.37 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: 0.58 Total: 40.62 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 4.32 Total: 13.19 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -5.72 Total: -96.01 kcal Atomic # 8 Polarization: -61.86 SS G_CDS: -2.07 Total: -63.92 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Total: -63.50 -0.87 -64.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365603928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.071 kcal (2) G-P(sol) polarization free energy of solvation -63.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds