Wall clock time and date at job start Tue Mar 31 2020 02:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47247 * 271.23643 * 3 2 1 5 5 H 1.48501 * 109.46872 * 31.23781 * 3 2 1 6 6 H 1.48502 * 109.46912 * 151.23041 * 3 2 1 7 7 C 1.37881 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99790 * 358.79602 * 7 2 1 9 9 C 1.50697 * 120.00238 * 178.79581 * 7 2 1 10 10 C 1.52997 * 115.54980 * 87.32406 * 9 7 2 11 11 N 1.46499 * 109.47006 * 32.60977 * 10 9 7 12 12 C 1.34784 * 119.99665 * 185.59816 * 11 10 9 13 13 O 1.21583 * 119.99874 * 4.86149 * 12 11 10 14 14 N 1.34777 * 119.99415 * 184.86151 * 12 11 10 15 15 C 1.47064 * 136.06312 * 354.65351 * 14 12 11 16 16 C 1.53753 * 87.88721 * 152.96231 * 15 14 12 17 17 O 1.42902 * 114.39617 * 272.67253 * 16 15 14 18 18 C 1.53001 * 114.08499 * 139.78550 * 16 15 14 19 19 C 1.53002 * 117.50090 * 155.30652 * 18 16 15 20 20 C 1.53001 * 117.50451 * 86.64674 * 18 16 15 21 21 C 1.47069 * 136.05009 * 175.02391 * 14 12 11 22 22 C 1.53000 * 117.51897 * 233.02848 * 9 7 2 23 23 C 1.53006 * 60.00243 * 107.48015 * 22 9 7 24 24 H 0.97002 * 119.99974 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47403 * 272.60611 * 10 9 7 26 26 H 1.09007 * 109.46778 * 152.60975 * 10 9 7 27 27 H 0.96994 * 120.00044 * 5.60296 * 11 10 9 28 28 H 1.08996 * 113.46705 * 267.70080 * 15 14 12 29 29 H 1.09003 * 113.46470 * 38.13474 * 15 14 12 30 30 H 0.96701 * 113.99661 * 43.25583 * 17 16 15 31 31 H 1.09005 * 115.54687 * 300.97451 * 18 16 15 32 32 H 1.08992 * 117.49888 * 359.97438 * 19 18 16 33 33 H 1.09001 * 117.49840 * 145.01335 * 19 18 16 34 34 H 1.08998 * 117.49760 * 214.98302 * 20 18 16 35 35 H 1.08998 * 117.49502 * 359.97332 * 20 18 16 36 36 H 1.08996 * 113.46875 * 321.86235 * 21 14 12 37 37 H 1.09000 * 113.46640 * 92.30843 * 21 14 12 38 38 H 1.09000 * 117.50088 * 214.96588 * 22 9 7 39 39 H 1.08999 * 117.49968 * 359.97438 * 22 9 7 40 40 H 1.09002 * 117.49841 * 252.51606 * 23 22 9 41 41 H 1.08996 * 117.51877 * 107.48296 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4706 2.0615 -1.3997 5 1 1.4600 2.6449 0.7261 6 1 3.5595 1.4326 0.6739 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 0.0187 9 6 3.5113 -1.1943 -0.0280 10 6 4.1961 -1.1161 1.3379 11 7 3.3749 -1.8057 2.3361 12 6 3.7240 -1.7693 3.6374 13 8 4.6687 -1.0923 3.9947 14 7 3.0259 -2.4833 4.5426 15 6 1.8116 -3.3127 4.5285 16 6 2.3958 -4.0878 5.7209 17 8 3.2447 -5.1784 5.3572 18 6 1.3676 -4.4498 6.7945 19 6 1.6707 -5.6567 7.6848 20 6 0.5832 -5.7506 6.6117 21 6 3.1397 -2.7705 5.9804 22 6 4.1984 -2.0213 -1.1164 23 6 4.1966 -0.4937 -1.2030 24 1 -0.4850 0.8401 -0.0004 25 1 4.3161 -0.0714 1.6250 26 1 5.1752 -1.5920 1.2812 27 1 2.5801 -2.2884 2.0605 28 1 0.9050 -2.7592 4.7728 29 1 1.7079 -3.9152 3.6260 30 1 3.8619 -4.9745 4.6412 31 1 0.8462 -3.6074 7.2491 32 1 2.6024 -6.1931 7.5053 33 1 1.3485 -5.6084 8.7249 34 1 -0.4541 -5.7641 6.9462 35 1 0.7994 -6.3484 5.7262 36 1 4.1675 -2.9110 6.3150 37 1 2.5832 -2.0740 6.6076 38 1 5.1384 -2.5097 -0.8595 39 1 3.5606 -2.5658 -1.8128 40 1 3.5575 -0.0331 -1.9563 41 1 5.1351 0.0231 -1.0029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376989581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:14 Heat of formation + Delta-G solvation = 20.763601 kcal Electronic energy + Delta-G solvation = -22400.613145 eV Core-core repulsion = 19091.157791 eV Total energy + Delta-G solvation = -3309.455354 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81490 -38.66101 -37.09036 -36.29042 -34.85874 -33.31264 -32.20951 -29.21953 -26.46369 -25.98409 -25.15785 -23.17754 -22.40095 -21.71972 -20.28208 -19.51800 -19.07030 -17.60264 -16.70890 -16.46889 -16.07315 -15.62456 -15.35572 -14.96673 -14.64029 -14.04060 -14.01426 -13.48593 -13.15865 -13.01560 -12.89294 -12.56570 -12.33245 -12.20426 -11.66877 -11.60672 -11.53253 -11.19585 -10.82681 -10.70682 -10.53511 -10.46345 -10.21660 -9.77471 -9.63319 -9.55802 -9.19714 -8.77470 -8.66658 -8.57455 -8.01878 -6.23289 -4.28709 2.79124 3.25600 3.36026 3.42685 3.47194 3.64418 3.87359 4.28170 4.35861 4.42079 4.48228 4.73809 4.86555 4.98256 5.00211 5.09521 5.26131 5.40397 5.55367 5.56090 5.58577 5.66678 5.71294 5.81827 5.94787 5.98018 6.02741 6.06304 6.09123 6.28070 6.43009 6.52125 6.69135 6.89083 7.05524 7.27720 7.39715 7.63950 7.68352 8.33704 8.57245 8.75690 9.13348 9.40729 10.87127 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.004538 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.930363 B = 6169.042407 C = 6458.910676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.085 3.915 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.493 4.493 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.171 3.829 11 N -0.708 5.708 12 C 0.729 3.271 13 O -0.603 6.603 14 N -0.671 5.671 15 C 0.076 3.924 16 C 0.133 3.867 17 O -0.532 6.532 18 C -0.137 4.137 19 C -0.166 4.166 20 C -0.167 4.167 21 C 0.100 3.900 22 C -0.178 4.178 23 C -0.195 4.195 24 H 0.266 0.734 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.407 0.593 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.386 0.614 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -9.498 11.357 14.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.119 4.119 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.179 1.179 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.046 3.954 11 N -0.362 5.362 12 C 0.432 3.568 13 O -0.483 6.483 14 N -0.412 5.412 15 C -0.048 4.048 16 C 0.090 3.910 17 O -0.338 6.338 18 C -0.155 4.155 19 C -0.203 4.203 20 C -0.204 4.204 21 C -0.024 4.024 22 C -0.215 4.215 23 C -0.233 4.233 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.245 0.755 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.235 0.765 31 H 0.140 0.860 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.709 -9.043 11.848 15.149 hybrid contribution 0.199 1.337 -0.769 1.555 sum 2.908 -7.706 11.079 13.805 Atomic orbital electron populations 1.69883 1.06374 1.27364 1.49234 1.24942 0.94533 0.99156 0.93240 0.86884 0.80977 0.83196 0.78380 1.20384 1.22154 1.17904 1.20105 0.86060 0.94388 1.52480 0.90400 1.19622 0.95409 1.00607 0.86085 1.20921 0.91011 0.96044 0.87416 1.45065 1.30963 1.56470 1.03739 1.15353 0.81855 0.78891 0.80709 1.90868 1.32278 1.45358 1.79815 1.48622 1.28803 1.54273 1.09552 1.23776 0.90013 0.91690 0.99369 1.21753 0.90168 0.85544 0.93533 1.86372 1.52572 1.36535 1.58320 1.21943 1.00277 0.93546 0.99778 1.22896 1.00959 1.00878 0.95572 1.22923 0.96602 0.99342 1.01547 1.23519 1.01953 0.94549 0.82414 1.22912 1.00989 0.92926 1.04703 1.22955 1.01493 0.95058 1.03806 0.92438 0.92122 0.93865 0.75508 0.88921 0.89838 0.76496 0.85997 0.87940 0.88989 0.88729 0.88249 0.90165 0.89547 0.90830 0.89464 0.89231 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 2 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.88 21.49 25.15 -169.99 -4.28 17.22 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.25 -6.11 5.30 56.52 0.30 -5.81 16 7 C -0.49 -12.62 7.79 -34.44 -0.27 -12.89 16 8 H 0.08 2.14 8.06 -52.48 -0.42 1.71 16 9 C -0.02 -0.35 1.24 -155.66 -0.19 -0.54 16 10 C 0.17 3.66 5.63 -4.04 -0.02 3.64 16 11 N -0.71 -14.48 5.29 -65.22 -0.34 -14.83 16 12 C 0.73 14.75 8.79 -86.91 -0.76 13.98 16 13 O -0.60 -14.29 17.09 5.29 0.09 -14.20 16 14 N -0.67 -10.56 3.51 -190.83 -0.67 -11.23 16 15 C 0.08 0.95 7.67 -8.37 -0.06 0.88 16 16 C 0.13 1.43 1.83 -89.97 -0.16 1.27 16 17 O -0.53 -5.95 12.38 -35.23 -0.44 -6.38 16 18 C -0.14 -1.23 5.47 -90.62 -0.50 -1.73 16 19 C -0.17 -1.41 9.97 -26.69 -0.27 -1.68 16 20 C -0.17 -1.44 10.09 -26.69 -0.27 -1.71 16 21 C 0.10 1.25 8.01 -8.50 -0.07 1.18 16 22 C -0.18 -3.43 9.88 -26.73 -0.26 -3.70 16 23 C -0.20 -4.01 7.60 -26.72 -0.20 -4.22 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.06 1.43 6.39 -51.93 -0.33 1.10 16 26 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 27 H 0.41 8.23 7.01 -40.82 -0.29 7.94 16 28 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.39 3.95 8.83 45.56 0.40 4.36 16 31 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.98 7.51 -51.93 -0.39 0.59 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.09 1.93 7.22 -51.93 -0.37 1.55 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -31.23 336.92 -8.62 -39.85 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.69 Total: 12.73 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.14 Total: -3.29 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.24 Total: -50.99 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.35 Total: -20.58 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.28 Total: 17.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.23 -8.62 -39.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376989581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.609 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds