Wall clock time and date at job start Tue Mar 31 2020 02:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47247 * 271.23643 * 3 2 1 5 5 H 1.48501 * 109.46872 * 31.23781 * 3 2 1 6 6 H 1.48502 * 109.46912 * 151.23041 * 3 2 1 7 7 C 1.37881 * 119.99918 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99790 * 358.79602 * 7 2 1 9 9 C 1.50697 * 120.00238 * 178.79581 * 7 2 1 10 10 C 1.52997 * 115.54980 * 87.32406 * 9 7 2 11 11 N 1.46499 * 109.47006 * 32.60977 * 10 9 7 12 12 C 1.34784 * 119.99665 * 185.59816 * 11 10 9 13 13 O 1.21583 * 119.99874 * 4.86149 * 12 11 10 14 14 N 1.34777 * 119.99415 * 184.86151 * 12 11 10 15 15 C 1.47064 * 136.06312 * 354.65351 * 14 12 11 16 16 C 1.53753 * 87.88721 * 152.96231 * 15 14 12 17 17 O 1.42902 * 114.39617 * 272.67253 * 16 15 14 18 18 C 1.53001 * 114.08499 * 139.78550 * 16 15 14 19 19 C 1.53002 * 117.50090 * 155.30652 * 18 16 15 20 20 C 1.53001 * 117.50451 * 86.64674 * 18 16 15 21 21 C 1.47069 * 136.05009 * 175.02391 * 14 12 11 22 22 C 1.53000 * 117.51897 * 233.02848 * 9 7 2 23 23 C 1.53006 * 60.00243 * 107.48015 * 22 9 7 24 24 H 0.97002 * 119.99974 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47403 * 272.60611 * 10 9 7 26 26 H 1.09007 * 109.46778 * 152.60975 * 10 9 7 27 27 H 0.96994 * 120.00044 * 5.60296 * 11 10 9 28 28 H 1.08996 * 113.46705 * 267.70080 * 15 14 12 29 29 H 1.09003 * 113.46470 * 38.13474 * 15 14 12 30 30 H 0.96701 * 113.99661 * 43.25583 * 17 16 15 31 31 H 1.09005 * 115.54687 * 300.97451 * 18 16 15 32 32 H 1.08992 * 117.49888 * 359.97438 * 19 18 16 33 33 H 1.09001 * 117.49840 * 145.01335 * 19 18 16 34 34 H 1.08998 * 117.49760 * 214.98302 * 20 18 16 35 35 H 1.08998 * 117.49502 * 359.97332 * 20 18 16 36 36 H 1.08996 * 113.46875 * 321.86235 * 21 14 12 37 37 H 1.09000 * 113.46640 * 92.30843 * 21 14 12 38 38 H 1.09000 * 117.50088 * 214.96588 * 22 9 7 39 39 H 1.08999 * 117.49968 * 359.97438 * 22 9 7 40 40 H 1.09002 * 117.49841 * 252.51606 * 23 22 9 41 41 H 1.08996 * 117.51877 * 107.48296 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4706 2.0615 -1.3997 5 1 1.4600 2.6449 0.7261 6 1 3.5595 1.4326 0.6739 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 0.0187 9 6 3.5113 -1.1943 -0.0280 10 6 4.1961 -1.1161 1.3379 11 7 3.3749 -1.8057 2.3361 12 6 3.7240 -1.7693 3.6374 13 8 4.6687 -1.0923 3.9947 14 7 3.0259 -2.4833 4.5426 15 6 1.8116 -3.3127 4.5285 16 6 2.3958 -4.0878 5.7209 17 8 3.2447 -5.1784 5.3572 18 6 1.3676 -4.4498 6.7945 19 6 1.6707 -5.6567 7.6848 20 6 0.5832 -5.7506 6.6117 21 6 3.1397 -2.7705 5.9804 22 6 4.1984 -2.0213 -1.1164 23 6 4.1966 -0.4937 -1.2030 24 1 -0.4850 0.8401 -0.0004 25 1 4.3161 -0.0714 1.6250 26 1 5.1752 -1.5920 1.2812 27 1 2.5801 -2.2884 2.0605 28 1 0.9050 -2.7592 4.7728 29 1 1.7079 -3.9152 3.6260 30 1 3.8619 -4.9745 4.6412 31 1 0.8462 -3.6074 7.2491 32 1 2.6024 -6.1931 7.5053 33 1 1.3485 -5.6084 8.7249 34 1 -0.4541 -5.7641 6.9462 35 1 0.7994 -6.3484 5.7262 36 1 4.1675 -2.9110 6.3150 37 1 2.5832 -2.0740 6.6076 38 1 5.1384 -2.5097 -0.8595 39 1 3.5606 -2.5658 -1.8128 40 1 3.5575 -0.0331 -1.9563 41 1 5.1351 0.0231 -1.0029 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376989581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:13 Heat of formation + Delta-G solvation = -1.801134 kcal Electronic energy + Delta-G solvation = -22401.591625 eV Core-core repulsion = 19091.157791 eV Total energy + Delta-G solvation = -3310.433834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.94793 -40.10915 -38.69377 -37.20544 -35.84070 -34.95484 -34.26394 -30.49606 -28.09725 -27.28501 -26.75325 -24.24841 -23.32853 -23.05939 -21.29705 -21.08342 -20.57236 -18.95485 -18.31800 -17.76714 -17.32182 -16.97354 -16.75430 -16.30509 -15.84129 -15.68636 -15.17324 -14.85908 -14.65675 -14.56653 -14.29222 -14.10093 -13.90188 -13.34386 -13.11611 -12.69351 -12.62630 -12.48570 -12.22344 -12.17391 -12.02413 -11.61598 -11.59366 -11.44451 -11.04780 -10.93915 -10.68830 -10.49109 -10.44492 -10.08493 -9.50982 -8.33134 -6.38676 1.29632 1.36936 1.45725 1.48466 2.10308 2.33679 2.69190 2.91879 3.01534 3.06344 3.24383 3.52954 3.60606 3.85000 4.04715 4.21527 4.28057 4.33345 4.37739 4.39199 4.41896 4.52298 4.56662 4.61074 4.69390 4.85241 4.87205 4.92084 4.94719 5.06895 5.15368 5.20876 5.33535 5.42869 5.48177 5.60264 5.72631 6.22526 6.26689 6.56662 6.69121 7.04136 7.32601 7.56820 8.80339 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.004538 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.930363 B = 6169.042407 C = 6458.910676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.039 3.961 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.305 1.305 6 H -0.246 1.246 7 C -0.476 4.476 8 H 0.050 0.950 9 C -0.042 4.042 10 C 0.178 3.822 11 N -0.711 5.711 12 C 0.724 3.276 13 O -0.643 6.643 14 N -0.675 5.675 15 C 0.072 3.928 16 C 0.152 3.848 17 O -0.536 6.536 18 C -0.143 4.143 19 C -0.161 4.161 20 C -0.167 4.167 21 C 0.095 3.905 22 C -0.153 4.153 23 C -0.194 4.194 24 H 0.264 0.736 25 H 0.037 0.963 26 H 0.060 0.940 27 H 0.407 0.593 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.389 0.611 31 H 0.141 0.859 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 -10.240 12.134 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.160 4.160 3 Si 0.747 3.253 4 H -0.192 1.192 5 H -0.233 1.233 6 H -0.170 1.170 7 C -0.513 4.513 8 H 0.068 0.932 9 C -0.043 4.043 10 C 0.054 3.946 11 N -0.365 5.365 12 C 0.427 3.573 13 O -0.526 6.526 14 N -0.415 5.415 15 C -0.051 4.051 16 C 0.109 3.891 17 O -0.343 6.343 18 C -0.161 4.161 19 C -0.198 4.198 20 C -0.204 4.204 21 C -0.028 4.028 22 C -0.190 4.190 23 C -0.232 4.232 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.244 0.756 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.239 0.761 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.467 -9.827 12.637 16.380 hybrid contribution -0.054 1.442 -0.985 1.747 sum 3.413 -8.385 11.652 14.756 Atomic orbital electron populations 1.69988 1.07748 1.27785 1.51953 1.25539 0.94927 1.01811 0.93721 0.86189 0.80161 0.80144 0.78769 1.19214 1.23312 1.17012 1.20214 0.88111 0.92867 1.50130 0.93180 1.19526 0.93437 1.04063 0.87285 1.20780 0.91887 0.95006 0.86968 1.45007 1.30895 1.56503 1.04064 1.15491 0.81888 0.78966 0.80976 1.90826 1.34140 1.47225 1.80438 1.48688 1.29295 1.52998 1.10474 1.24016 0.89270 0.91499 1.00318 1.21641 0.89796 0.84694 0.92940 1.86385 1.52685 1.36748 1.58462 1.22036 1.00052 0.94521 0.99495 1.22930 1.00410 0.99962 0.96529 1.22969 0.97549 0.98599 1.01255 1.23820 1.02413 0.95852 0.80712 1.22959 1.01534 0.92345 1.02161 1.23008 1.01865 0.96275 1.02060 0.92666 0.94491 0.92208 0.75586 0.87951 0.90016 0.76143 0.84173 0.89182 0.87115 0.87114 0.89424 0.90537 0.87766 0.87798 0.89602 0.90369 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 13.96 21.45 0.30 -54.70 16 2 C 0.04 2.15 5.47 84.66 0.46 2.62 16 3 Si 0.92 44.16 25.15 68.60 1.73 45.88 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.25 -11.41 5.30 99.48 0.53 -10.89 16 7 C -0.48 -24.42 7.79 25.60 0.20 -24.22 16 8 H 0.05 2.80 8.06 -2.91 -0.02 2.78 16 9 C -0.04 -1.79 1.24 -52.93 -0.07 -1.86 16 10 C 0.18 7.48 5.63 86.38 0.49 7.96 16 11 N -0.71 -28.90 5.29 -478.52 -2.53 -31.44 16 12 C 0.72 29.15 8.79 179.05 1.57 30.73 16 13 O -0.64 -30.49 17.09 -3.98 -0.07 -30.56 16 14 N -0.67 -20.78 3.51 -876.42 -3.08 -23.86 16 15 C 0.07 1.73 7.67 83.27 0.64 2.37 16 16 C 0.15 3.03 1.83 -10.37 -0.02 3.01 16 17 O -0.54 -11.33 12.38 -148.98 -1.84 -13.18 16 18 C -0.14 -2.22 5.47 -10.79 -0.06 -2.28 16 19 C -0.16 -2.36 9.97 30.62 0.31 -2.05 16 20 C -0.17 -2.50 10.09 30.62 0.31 -2.19 16 21 C 0.10 2.24 8.01 83.18 0.67 2.91 16 22 C -0.15 -5.47 9.88 30.60 0.30 -5.17 16 23 C -0.19 -7.51 7.60 30.60 0.23 -7.28 16 24 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 25 H 0.04 1.72 6.39 -2.38 -0.02 1.70 16 26 H 0.06 2.29 7.89 -2.38 -0.02 2.27 16 27 H 0.41 16.50 7.01 -92.71 -0.65 15.85 16 28 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.39 7.65 8.83 -74.06 -0.65 7.00 16 31 H 0.14 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.09 1.57 7.51 -2.39 -0.02 1.55 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.10 2.11 8.10 -2.39 -0.02 2.10 16 38 H 0.10 3.13 8.04 -2.39 -0.02 3.11 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.08 3.21 7.22 -2.39 -0.02 3.19 16 41 H 0.10 3.32 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -67.32 336.92 -0.90 -68.22 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.44 Total: 35.07 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.03 Total: 4.55 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -5.31 Total: -109.99 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.91 Total: -43.74 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.73 Total: 45.88 kcal Total: -67.32 -0.90 -68.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376989581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.418 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds