Wall clock time and date at job start Tue Mar 31 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00001 * 2 1 4 4 H 1.48498 * 109.46984 * 239.99680 * 3 2 1 5 5 H 1.48505 * 109.47269 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47469 * 119.99472 * 3 2 1 7 7 C 1.37879 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99426 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00211 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47334 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00232 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00263 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.88332 * 26.65536 * 14 13 11 16 16 C 1.53846 * 113.58821 * 255.49639 * 14 13 11 17 17 H 1.09000 * 116.27358 * 150.33164 * 16 14 13 18 18 C 1.54431 * 112.96452 * 13.18987 * 16 14 13 19 19 C 1.54442 * 104.15835 * 266.23190 * 18 16 14 20 20 O 1.44338 * 104.81071 * 24.40716 * 19 18 16 21 21 C 1.44268 * 105.51078 * 319.51064 * 20 19 18 22 22 H 1.08994 * 115.50289 * 270.40269 * 21 20 19 23 23 C 1.52825 * 113.66815 * 132.95393 * 21 20 19 24 24 C 1.52994 * 121.02970 * 44.91056 * 23 21 20 25 25 C 1.53937 * 86.80585 * 100.58898 * 24 23 21 26 26 C 1.52977 * 121.08211 * 153.21920 * 23 21 20 27 27 H 0.96994 * 120.00283 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47245 * 60.00031 * 9 7 2 29 29 H 1.09002 * 109.47498 * 300.00487 * 9 7 2 30 30 H 0.97000 * 119.99711 * 359.97438 * 10 9 7 31 31 H 0.97000 * 119.99745 * 359.97438 * 13 11 10 32 32 H 1.09006 * 110.49164 * 24.89774 * 18 16 14 33 33 H 1.08995 * 110.49914 * 147.55787 * 18 16 14 34 34 H 1.09004 * 110.36970 * 265.57029 * 19 18 16 35 35 H 1.09005 * 110.46899 * 143.29184 * 19 18 16 36 36 H 1.09009 * 113.65986 * 215.06946 * 24 23 21 37 37 H 1.09000 * 113.65946 * 346.11032 * 24 23 21 38 38 H 1.08998 * 113.58255 * 270.20913 * 25 24 23 39 39 H 1.09003 * 113.65292 * 139.41337 * 25 24 23 40 40 H 1.08997 * 113.65994 * 13.93160 * 26 23 21 41 41 H 1.09005 * 113.65832 * 144.97159 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1055 0.0006 13 7 2.6296 -5.9078 0.0021 14 6 2.1413 -7.2890 0.0023 15 1 1.1540 -7.3896 -0.4485 16 6 2.2685 -7.9867 1.3676 17 1 1.5272 -8.7549 1.5878 18 6 2.5757 -7.0051 2.5196 19 6 4.1157 -7.0263 2.6334 20 8 4.5766 -7.4351 1.3281 21 6 3.6675 -8.4725 0.9054 22 1 3.9474 -9.4866 1.1904 23 6 3.1606 -8.2983 -0.5258 24 6 4.1172 -7.9313 -1.6620 25 6 4.0949 -9.4216 -2.0468 26 6 2.7195 -9.5027 -1.3595 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 3.1567 -3.4355 0.0021 31 1 3.5832 -5.7305 0.0024 32 1 2.2251 -6.0034 2.2710 33 1 2.1196 -7.3507 3.4472 34 1 4.4304 -7.7457 3.3895 35 1 4.4938 -6.0330 2.8754 36 1 3.6733 -7.2786 -2.4140 37 1 5.0911 -7.5827 -1.3185 38 1 4.8656 -10.0116 -1.5509 39 1 4.0559 -9.5951 -3.1222 40 1 2.5759 -10.4109 -0.7742 41 1 1.8840 -9.2905 -2.0266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408365541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:20 Heat of formation + Delta-G solvation = -25.455017 kcal Electronic energy + Delta-G solvation = -22793.905763 eV Core-core repulsion = 19482.446220 eV Total energy + Delta-G solvation = -3311.459543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.74347 -38.73607 -37.76555 -34.61318 -33.92797 -32.48132 -31.69318 -30.57778 -27.15222 -25.81646 -25.07430 -24.08061 -22.47670 -22.12979 -20.43547 -19.71563 -18.57887 -17.96270 -16.57068 -16.16268 -16.09040 -15.66127 -15.13388 -14.90410 -14.84236 -14.46758 -14.15181 -13.51239 -13.22134 -13.02117 -12.61518 -12.47973 -12.01956 -11.91997 -11.82801 -11.67740 -11.62336 -11.16912 -10.95330 -10.86747 -10.75048 -10.49354 -10.45037 -10.26700 -9.93142 -9.59121 -9.35309 -9.32436 -8.70446 -8.57303 -7.70894 -6.12331 -4.18707 3.25072 3.27954 3.32843 3.35160 3.58328 3.94709 4.14483 4.33969 4.44810 4.50757 4.64847 4.72364 4.76203 4.95788 5.13678 5.17529 5.22491 5.23578 5.25138 5.33437 5.51264 5.58273 5.65732 5.68372 5.72999 5.75293 5.92008 5.98303 6.01258 6.19743 6.23465 6.33198 6.73701 7.05169 7.20942 7.56524 7.60720 7.61305 7.97283 8.11125 8.80612 9.01251 9.38816 9.53180 10.97915 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.004029 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.259256 B = 6948.475527 C = 7164.807718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.268 3.732 10 N -0.730 5.730 11 C 0.693 3.307 12 O -0.603 6.603 13 N -0.728 5.728 14 C 0.174 3.826 15 H 0.100 0.900 16 C -0.155 4.155 17 H 0.112 0.888 18 C -0.144 4.144 19 C 0.051 3.949 20 O -0.356 6.356 21 C 0.074 3.926 22 H 0.089 0.911 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.140 4.140 26 C -0.105 4.105 27 H 0.266 0.734 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.397 0.603 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.558 -19.658 1.256 21.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.382 5.382 11 C 0.393 3.607 12 O -0.482 6.482 13 N -0.384 5.384 14 C 0.066 3.934 15 H 0.118 0.882 16 C -0.176 4.176 17 H 0.130 0.870 18 C -0.182 4.182 19 C -0.025 4.025 20 O -0.275 6.275 21 C 0.016 3.984 22 H 0.106 0.894 23 C -0.112 4.112 24 C -0.157 4.157 25 C -0.177 4.177 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.218 0.782 31 H 0.232 0.768 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.435 -19.551 1.137 21.323 hybrid contribution 1.116 1.033 0.290 1.548 sum 9.552 -18.518 1.427 20.885 Atomic orbital electron populations 1.69970 1.06081 1.27326 1.48986 1.24936 0.94898 0.99349 0.94796 0.86479 0.79398 0.82378 0.78653 1.20105 1.21099 1.20115 1.21198 0.93229 0.90477 1.53075 0.92029 1.18950 0.87754 0.81065 0.97510 1.45713 1.10753 1.04407 1.77294 1.16156 0.85200 0.81068 0.78251 1.90864 1.14283 1.84232 1.58815 1.44769 1.09103 1.03723 1.80780 1.21214 0.97697 0.80484 0.94034 0.88167 1.24556 0.97876 0.98785 0.96347 0.87036 1.22790 0.95761 1.01611 0.98032 1.23455 0.93583 1.00338 0.85162 1.88942 1.51292 1.54018 1.33225 1.23700 0.88721 0.91830 0.94111 0.89364 1.22936 0.97395 0.97669 0.93240 1.22572 0.99607 0.96381 0.97097 1.22841 0.97165 0.97223 1.00466 1.22566 0.97935 0.96060 0.97714 0.92448 0.95824 0.95840 0.78203 0.76779 0.89544 0.91106 0.92626 0.88964 0.89651 0.90843 0.90325 0.91392 0.91105 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.22 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.27 7.28 5.43 -5.19 -0.03 7.26 16 10 N -0.73 -15.95 5.55 -66.42 -0.37 -16.32 16 11 C 0.69 14.53 7.70 -86.93 -0.67 13.86 16 12 O -0.60 -15.17 15.98 5.29 0.08 -15.08 16 13 N -0.73 -11.46 3.48 -58.31 -0.20 -11.66 16 14 C 0.17 2.39 3.97 -67.56 -0.27 2.12 16 15 H 0.10 1.57 7.53 -51.93 -0.39 1.18 16 16 C -0.16 -1.81 5.08 -88.30 -0.45 -2.26 16 17 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 18 C -0.14 -1.78 6.27 -25.22 -0.16 -1.93 16 19 C 0.05 0.56 7.62 37.91 0.29 0.85 16 20 O -0.36 -4.28 9.75 -35.23 -0.34 -4.63 16 21 C 0.07 0.78 5.18 -25.69 -0.13 0.65 16 22 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.11 -1.18 0.83 -154.69 -0.13 -1.31 16 24 C -0.12 -1.24 7.29 -26.25 -0.19 -1.43 16 25 C -0.14 -1.17 8.08 -25.75 -0.21 -1.38 16 26 C -0.10 -0.91 7.84 -26.24 -0.21 -1.11 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.39 7.36 8.34 -40.82 -0.34 7.02 16 31 H 0.40 5.72 7.39 -40.82 -0.30 5.41 16 32 H 0.09 1.36 6.31 -51.93 -0.33 1.03 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.97 8.14 -51.92 -0.42 0.54 16 37 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -32.18 330.19 -9.09 -41.27 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.39 Total: 9.29 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.57 Total: 1.77 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.16 Total: -53.64 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.26 Total: -19.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.18 -9.09 -41.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.813 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds