Wall clock time and date at job start Tue Mar 31 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00001 * 2 1 4 4 H 1.48498 * 109.46984 * 239.99680 * 3 2 1 5 5 H 1.48505 * 109.47269 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47469 * 119.99472 * 3 2 1 7 7 C 1.37879 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99426 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00211 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47334 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99943 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00232 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00263 * 179.97438 * 13 11 10 15 15 H 1.08999 * 112.88332 * 26.65536 * 14 13 11 16 16 C 1.53846 * 113.58821 * 255.49639 * 14 13 11 17 17 H 1.09000 * 116.27358 * 150.33164 * 16 14 13 18 18 C 1.54431 * 112.96452 * 13.18987 * 16 14 13 19 19 C 1.54442 * 104.15835 * 266.23190 * 18 16 14 20 20 O 1.44338 * 104.81071 * 24.40716 * 19 18 16 21 21 C 1.44268 * 105.51078 * 319.51064 * 20 19 18 22 22 H 1.08994 * 115.50289 * 270.40269 * 21 20 19 23 23 C 1.52825 * 113.66815 * 132.95393 * 21 20 19 24 24 C 1.52994 * 121.02970 * 44.91056 * 23 21 20 25 25 C 1.53937 * 86.80585 * 100.58898 * 24 23 21 26 26 C 1.52977 * 121.08211 * 153.21920 * 23 21 20 27 27 H 0.96994 * 120.00283 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47245 * 60.00031 * 9 7 2 29 29 H 1.09002 * 109.47498 * 300.00487 * 9 7 2 30 30 H 0.97000 * 119.99711 * 359.97438 * 10 9 7 31 31 H 0.97000 * 119.99745 * 359.97438 * 13 11 10 32 32 H 1.09006 * 110.49164 * 24.89774 * 18 16 14 33 33 H 1.08995 * 110.49914 * 147.55787 * 18 16 14 34 34 H 1.09004 * 110.36970 * 265.57029 * 19 18 16 35 35 H 1.09005 * 110.46899 * 143.29184 * 19 18 16 36 36 H 1.09009 * 113.65986 * 215.06946 * 24 23 21 37 37 H 1.09000 * 113.65946 * 346.11032 * 24 23 21 38 38 H 1.08998 * 113.58255 * 270.20913 * 25 24 23 39 39 H 1.09003 * 113.65292 * 139.41337 * 25 24 23 40 40 H 1.08997 * 113.65994 * 13.93160 * 26 23 21 41 41 H 1.09005 * 113.65832 * 144.97159 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5584 -5.1055 0.0006 13 7 2.6296 -5.9078 0.0021 14 6 2.1413 -7.2890 0.0023 15 1 1.1540 -7.3896 -0.4485 16 6 2.2685 -7.9867 1.3676 17 1 1.5272 -8.7549 1.5878 18 6 2.5757 -7.0051 2.5196 19 6 4.1157 -7.0263 2.6334 20 8 4.5766 -7.4351 1.3281 21 6 3.6675 -8.4725 0.9054 22 1 3.9474 -9.4866 1.1904 23 6 3.1606 -8.2983 -0.5258 24 6 4.1172 -7.9313 -1.6620 25 6 4.0949 -9.4216 -2.0468 26 6 2.7195 -9.5027 -1.3595 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8902 30 1 3.1567 -3.4355 0.0021 31 1 3.5832 -5.7305 0.0024 32 1 2.2251 -6.0034 2.2710 33 1 2.1196 -7.3507 3.4472 34 1 4.4304 -7.7457 3.3895 35 1 4.4938 -6.0330 2.8754 36 1 3.6733 -7.2786 -2.4140 37 1 5.0911 -7.5827 -1.3185 38 1 4.8656 -10.0116 -1.5509 39 1 4.0559 -9.5951 -3.1222 40 1 2.5759 -10.4109 -0.7742 41 1 1.8840 -9.2905 -2.0266 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408365541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:20 Heat of formation + Delta-G solvation = -47.902816 kcal Electronic energy + Delta-G solvation = -22794.879173 eV Core-core repulsion = 19482.446220 eV Total energy + Delta-G solvation = -3312.432953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.72872 -40.43757 -38.58943 -36.24048 -35.54862 -34.40740 -33.11508 -31.51105 -29.18945 -26.59611 -26.16166 -25.14698 -24.34123 -22.97513 -21.99043 -20.90419 -19.98955 -19.24334 -18.09609 -17.43926 -17.27416 -17.00289 -16.53781 -16.30188 -16.02072 -15.86856 -15.28821 -14.97105 -14.78737 -14.45027 -14.01787 -13.83068 -13.46332 -13.26820 -12.92792 -12.83234 -12.68992 -12.63063 -12.43264 -12.23369 -12.09867 -11.66279 -11.51057 -11.41768 -11.33537 -11.15196 -10.82855 -10.79173 -10.47156 -10.13431 -9.54795 -8.28420 -6.45098 1.42810 1.47447 1.55411 1.84468 2.23461 2.39135 2.63480 3.06271 3.22288 3.38361 3.63872 3.68543 3.80792 3.86568 3.97781 4.08353 4.24008 4.33914 4.38776 4.51244 4.64661 4.75368 4.82443 4.87588 4.90055 4.91828 5.04506 5.10778 5.13180 5.15649 5.17136 5.26304 5.41433 5.48814 5.56488 5.61624 5.69668 5.85023 5.93834 6.29014 6.66314 7.24114 7.31651 7.73769 8.83800 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025396 B = 0.004029 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.259256 B = 6948.475527 C = 7164.807718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.082 0.918 9 C 0.288 3.712 10 N -0.725 5.725 11 C 0.694 3.306 12 O -0.649 6.649 13 N -0.703 5.703 14 C 0.149 3.851 15 H 0.074 0.926 16 C -0.154 4.154 17 H 0.130 0.870 18 C -0.147 4.147 19 C 0.055 3.945 20 O -0.371 6.371 21 C 0.086 3.914 22 H 0.119 0.881 23 C -0.104 4.104 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.100 4.100 27 H 0.269 0.731 28 H -0.016 1.016 29 H -0.015 1.015 30 H 0.402 0.598 31 H 0.407 0.593 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 -21.013 1.616 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.100 0.900 9 C 0.165 3.835 10 N -0.378 5.378 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.358 5.358 14 C 0.042 3.958 15 H 0.092 0.908 16 C -0.174 4.174 17 H 0.148 0.852 18 C -0.185 4.185 19 C -0.022 4.022 20 O -0.290 6.290 21 C 0.029 3.971 22 H 0.136 0.864 23 C -0.106 4.106 24 C -0.164 4.164 25 C -0.164 4.164 26 C -0.137 4.137 27 H 0.078 0.922 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.237 0.763 31 H 0.244 0.756 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.217 -20.968 1.497 23.826 hybrid contribution 0.215 1.386 0.175 1.413 sum 11.432 -19.582 1.672 22.736 Atomic orbital electron populations 1.70137 1.08263 1.28645 1.49854 1.26055 0.95773 1.03814 0.93788 0.85192 0.77898 0.76552 0.79460 1.18742 1.20942 1.18665 1.21555 0.94219 0.90517 1.53102 0.90031 1.18375 0.88006 0.83287 0.93813 1.45315 1.10743 1.03916 1.77827 1.16266 0.85075 0.81510 0.77715 1.90825 1.16622 1.84895 1.60806 1.44515 1.08685 1.03615 1.78978 1.21560 0.97757 0.79764 0.96701 0.90811 1.24607 0.99538 0.98721 0.94524 0.85173 1.22776 0.97274 0.99500 0.98975 1.23498 0.92104 1.01147 0.85415 1.88926 1.51608 1.54701 1.33815 1.23772 0.87423 0.92685 0.93262 0.86360 1.23015 0.96274 0.97373 0.93891 1.22588 0.99106 0.97974 0.96747 1.22808 0.97173 0.95249 1.01200 1.22596 0.98054 0.95759 0.97313 0.92209 0.99815 0.99734 0.76341 0.75626 0.93628 0.89651 0.90013 0.89207 0.91220 0.91190 0.88837 0.90593 0.88840 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 2 C 0.01 0.30 5.46 84.65 0.46 0.77 16 3 Si 0.99 42.99 29.54 68.60 2.03 45.02 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.56 -31.11 9.28 25.60 0.24 -30.87 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.29 16.53 5.43 85.63 0.46 16.99 16 10 N -0.72 -33.04 5.55 -482.31 -2.68 -35.71 16 11 C 0.69 30.59 7.70 179.06 1.38 31.97 16 12 O -0.65 -34.79 15.98 -3.99 -0.06 -34.85 16 13 N -0.70 -22.72 3.48 -456.67 -1.59 -24.31 16 14 C 0.15 4.11 3.97 45.23 0.18 4.29 16 15 H 0.07 2.43 7.53 -2.39 -0.02 2.41 16 16 C -0.15 -3.38 5.08 -9.29 -0.05 -3.43 16 17 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 18 C -0.15 -3.52 6.27 31.57 0.20 -3.32 16 19 C 0.05 1.08 7.62 72.47 0.55 1.63 16 20 O -0.37 -8.05 9.75 -148.98 -1.45 -9.50 16 21 C 0.09 1.57 5.18 31.27 0.16 1.73 16 22 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 23 C -0.10 -2.04 0.83 -52.30 -0.04 -2.08 16 24 C -0.13 -2.45 7.29 30.91 0.23 -2.22 16 25 C -0.13 -1.75 8.08 31.23 0.25 -1.50 16 26 C -0.10 -1.46 7.84 30.91 0.24 -1.22 16 27 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 28 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.40 15.55 8.34 -92.71 -0.77 14.78 16 31 H 0.41 11.72 7.39 -92.71 -0.68 11.03 16 32 H 0.04 1.47 6.31 -2.38 -0.02 1.46 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -73.32 330.19 0.38 -72.94 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.42 Total: 30.45 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 4.26 Total: 12.74 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -3.98 Total: -116.79 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -1.52 Total: -44.36 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.32 0.38 -72.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.037 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds