Wall clock time and date at job start Tue Mar 31 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48493 * 109.47259 * 269.99505 * 3 2 1 5 5 H 1.48506 * 109.46991 * 30.00213 * 3 2 1 6 6 H 1.48502 * 109.46740 * 149.99477 * 3 2 1 7 7 C 1.37879 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99556 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00191 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99811 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00036 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99771 * 179.97438 * 13 11 10 15 15 H 1.09005 * 112.82969 * 23.87924 * 14 13 11 16 16 C 1.53846 * 113.59103 * 252.64872 * 14 13 11 17 17 H 1.09007 * 116.28293 * 340.35836 * 16 14 13 18 18 C 1.54428 * 112.95430 * 116.92146 * 16 14 13 19 19 C 1.54449 * 104.15584 * 93.64410 * 18 16 14 20 20 O 1.44371 * 104.80455 * 335.64181 * 19 18 16 21 21 C 1.45810 * 105.62036 * 40.59851 * 20 19 18 22 22 H 1.09004 * 115.99699 * 89.24647 * 21 20 19 23 23 C 1.52826 * 113.70298 * 227.31077 * 21 20 19 24 24 C 1.52980 * 121.08026 * 314.07347 * 23 21 20 25 25 C 1.53938 * 86.81554 * 209.52700 * 24 23 21 26 26 C 1.53145 * 121.10138 * 205.67139 * 23 21 20 27 27 H 0.97002 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47558 * 59.99610 * 9 7 2 29 29 H 1.08995 * 109.46982 * 299.99155 * 9 7 2 30 30 H 0.97005 * 119.99687 * 359.97438 * 10 9 7 31 31 H 0.96997 * 119.99983 * 359.97438 * 13 11 10 32 32 H 1.09003 * 110.49342 * 212.31279 * 18 16 14 33 33 H 1.08997 * 110.49603 * 334.84565 * 18 16 14 34 34 H 1.09007 * 110.37088 * 94.46933 * 19 18 16 35 35 H 1.08993 * 110.37163 * 216.69741 * 19 18 16 36 36 H 1.09007 * 113.65792 * 95.04459 * 24 23 21 37 37 H 1.09000 * 113.65504 * 324.01246 * 24 23 21 38 38 H 1.09002 * 113.58387 * 139.37551 * 25 24 23 39 39 H 1.09004 * 113.58266 * 270.09969 * 25 24 23 40 40 H 1.08999 * 113.65743 * 36.00245 * 26 23 21 41 41 H 1.08996 * 113.69963 * 264.92099 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5585 -5.1055 0.0020 13 7 2.6297 -5.9077 0.0016 14 6 2.1414 -7.2889 0.0027 15 1 1.1342 -7.3817 -0.4037 16 6 2.3329 -8.0086 1.3489 17 1 3.0735 -7.5800 2.0243 18 6 0.9978 -8.4175 2.0086 19 6 0.7707 -9.8694 1.5332 20 8 1.5163 -9.9751 0.3015 21 6 2.7635 -9.2566 0.5345 22 1 3.5841 -9.8448 0.9454 23 6 3.1343 -8.2892 -0.5890 24 6 3.0481 -8.7128 -2.0564 25 6 4.1943 -7.7199 -2.3212 26 6 4.5919 -7.8951 -0.8445 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 3.1568 -3.4353 0.0002 31 1 3.5833 -5.7304 0.0012 32 1 1.0816 -8.3802 3.0947 33 1 0.1895 -7.7711 1.6667 34 1 1.1544 -10.5745 2.2707 35 1 -0.2893 -10.0484 1.3537 36 1 2.1098 -8.4359 -2.5372 37 1 3.3225 -9.7536 -2.2281 38 1 4.9417 -8.0933 -3.0213 39 1 3.8524 -6.7139 -2.5644 40 1 5.3004 -8.7060 -0.6755 41 1 4.8862 -6.9654 -0.3576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408365542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:23 Heat of formation + Delta-G solvation = -28.059018 kcal Electronic energy + Delta-G solvation = -22482.259921 eV Core-core repulsion = 19170.687459 eV Total energy + Delta-G solvation = -3311.572461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59657 -38.83751 -37.77895 -34.54075 -33.94427 -32.56347 -31.84078 -30.58591 -27.20498 -25.95720 -24.71997 -24.39041 -22.36369 -22.05038 -20.31766 -20.13774 -18.58851 -17.80364 -16.94462 -16.34505 -15.99826 -15.41435 -15.19961 -14.99172 -14.58308 -14.44768 -14.14706 -13.54963 -13.27378 -12.94010 -12.61431 -12.49186 -12.14586 -11.96298 -11.93817 -11.68807 -11.50593 -11.31470 -10.95970 -10.91723 -10.79470 -10.65139 -10.40188 -10.28774 -9.93879 -9.67201 -9.36958 -9.34539 -8.73329 -8.62304 -7.74556 -6.14177 -4.20698 3.25355 3.29433 3.32663 3.37508 3.48003 3.91038 4.11726 4.29420 4.34258 4.52619 4.64139 4.66491 4.74864 4.92724 5.08248 5.11336 5.18871 5.20748 5.22017 5.37069 5.44126 5.54301 5.57769 5.68067 5.69720 5.78254 5.90317 5.97609 6.06559 6.12978 6.22791 6.31267 6.70798 6.92520 7.15518 7.53456 7.57281 7.59020 7.92993 8.06362 8.78112 8.96531 9.35534 9.50061 10.96085 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.003836 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.199023 B = 7298.049170 C = 7944.334566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.693 3.307 12 O -0.600 6.600 13 N -0.745 5.745 14 C 0.189 3.811 15 H 0.120 0.880 16 C -0.152 4.152 17 H 0.108 0.892 18 C -0.148 4.148 19 C 0.049 3.951 20 O -0.359 6.359 21 C 0.063 3.937 22 H 0.096 0.904 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.139 4.139 26 C -0.110 4.110 27 H 0.265 0.735 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.385 0.615 31 H 0.390 0.610 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.563 -19.383 1.119 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.393 3.607 12 O -0.479 6.479 13 N -0.401 5.401 14 C 0.082 3.918 15 H 0.138 0.862 16 C -0.173 4.173 17 H 0.126 0.874 18 C -0.186 4.186 19 C -0.028 4.028 20 O -0.278 6.278 21 C 0.005 3.995 22 H 0.113 0.887 23 C -0.110 4.110 24 C -0.154 4.154 25 C -0.177 4.177 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.217 0.783 31 H 0.225 0.775 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.165 -19.483 0.921 21.145 hybrid contribution 1.322 1.203 0.338 1.819 sum 9.487 -18.280 1.259 20.633 Atomic orbital electron populations 1.69979 1.06093 1.27240 1.48983 1.24940 0.94897 0.99372 0.94783 0.86422 0.79599 0.82713 0.78192 1.20485 1.21019 1.19794 1.21227 0.93241 0.90466 1.53069 0.91988 1.18967 0.87778 0.81078 0.97566 1.45727 1.10712 1.04476 1.77242 1.16195 0.85291 0.81074 0.78159 1.90864 1.14244 1.84184 1.58604 1.45167 1.08676 1.04720 1.81495 1.21854 0.98158 0.78513 0.93253 0.86242 1.24573 0.97892 0.97416 0.97375 0.87354 1.22890 0.98022 0.96761 1.00904 1.23459 0.97168 0.95735 0.86439 1.89252 1.29308 1.75337 1.33867 1.24001 0.88432 0.90638 0.96429 0.88667 1.23047 0.96879 0.96059 0.95060 1.22596 0.99294 0.99162 0.94323 1.22849 0.98436 1.00491 0.95906 1.22584 0.93683 1.01519 0.97004 0.92477 0.95783 0.95786 0.78267 0.77510 0.90808 0.89579 0.92576 0.88983 0.91055 0.89829 0.91404 0.89790 0.89464 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.21 5.43 -5.19 -0.03 7.18 16 10 N -0.73 -15.69 5.55 -66.42 -0.37 -16.05 16 11 C 0.69 14.36 8.57 -86.92 -0.74 13.62 16 12 O -0.60 -15.06 15.94 5.29 0.08 -14.98 16 13 N -0.74 -11.19 5.27 -58.31 -0.31 -11.50 16 14 C 0.19 2.62 3.40 -67.56 -0.23 2.39 16 15 H 0.12 2.04 7.26 -51.93 -0.38 1.66 16 16 C -0.15 -1.78 4.84 -88.31 -0.43 -2.21 16 17 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.15 -1.72 6.64 -25.22 -0.17 -1.88 16 19 C 0.05 0.50 7.64 37.92 0.29 0.79 16 20 O -0.36 -4.45 11.21 -35.23 -0.39 -4.85 16 21 C 0.06 0.67 5.28 -25.70 -0.14 0.54 16 22 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 23 C -0.11 -1.18 0.97 -154.61 -0.15 -1.33 16 24 C -0.12 -1.24 7.76 -26.25 -0.20 -1.44 16 25 C -0.14 -1.33 8.08 -25.77 -0.21 -1.54 16 26 C -0.11 -0.96 7.47 -26.17 -0.20 -1.16 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.39 7.07 8.34 -40.82 -0.34 6.73 16 31 H 0.39 4.77 6.70 -40.82 -0.27 4.49 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.21 7.90 -51.93 -0.41 0.80 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.58 6.38 -51.93 -0.33 0.25 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -32.71 333.12 -9.21 -41.92 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.34 Total: 8.59 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.62 Total: 1.51 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.06 Total: -53.10 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.31 Total: -19.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.71 -9.21 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.857 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds