Wall clock time and date at job start Tue Mar 31 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99910 * 2 1 4 4 H 1.48493 * 109.47259 * 269.99505 * 3 2 1 5 5 H 1.48506 * 109.46991 * 30.00213 * 3 2 1 6 6 H 1.48502 * 109.46740 * 149.99477 * 3 2 1 7 7 C 1.37879 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99556 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00191 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99811 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00036 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99771 * 179.97438 * 13 11 10 15 15 H 1.09005 * 112.82969 * 23.87924 * 14 13 11 16 16 C 1.53846 * 113.59103 * 252.64872 * 14 13 11 17 17 H 1.09007 * 116.28293 * 340.35836 * 16 14 13 18 18 C 1.54428 * 112.95430 * 116.92146 * 16 14 13 19 19 C 1.54449 * 104.15584 * 93.64410 * 18 16 14 20 20 O 1.44371 * 104.80455 * 335.64181 * 19 18 16 21 21 C 1.45810 * 105.62036 * 40.59851 * 20 19 18 22 22 H 1.09004 * 115.99699 * 89.24647 * 21 20 19 23 23 C 1.52826 * 113.70298 * 227.31077 * 21 20 19 24 24 C 1.52980 * 121.08026 * 314.07347 * 23 21 20 25 25 C 1.53938 * 86.81554 * 209.52700 * 24 23 21 26 26 C 1.53145 * 121.10138 * 205.67139 * 23 21 20 27 27 H 0.97002 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47558 * 59.99610 * 9 7 2 29 29 H 1.08995 * 109.46982 * 299.99155 * 9 7 2 30 30 H 0.97005 * 119.99687 * 359.97438 * 10 9 7 31 31 H 0.96997 * 119.99983 * 359.97438 * 13 11 10 32 32 H 1.09003 * 110.49342 * 212.31279 * 18 16 14 33 33 H 1.08997 * 110.49603 * 334.84565 * 18 16 14 34 34 H 1.09007 * 110.37088 * 94.46933 * 19 18 16 35 35 H 1.08993 * 110.37163 * 216.69741 * 19 18 16 36 36 H 1.09007 * 113.65792 * 95.04459 * 24 23 21 37 37 H 1.09000 * 113.65504 * 324.01246 * 24 23 21 38 38 H 1.09002 * 113.58387 * 139.37551 * 25 24 23 39 39 H 1.09004 * 113.58266 * 270.09969 * 25 24 23 40 40 H 1.08999 * 113.65743 * 36.00245 * 26 23 21 41 41 H 1.08996 * 113.69963 * 264.92099 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5585 -5.1055 0.0020 13 7 2.6297 -5.9077 0.0016 14 6 2.1414 -7.2889 0.0027 15 1 1.1342 -7.3817 -0.4037 16 6 2.3329 -8.0086 1.3489 17 1 3.0735 -7.5800 2.0243 18 6 0.9978 -8.4175 2.0086 19 6 0.7707 -9.8694 1.5332 20 8 1.5163 -9.9751 0.3015 21 6 2.7635 -9.2566 0.5345 22 1 3.5841 -9.8448 0.9454 23 6 3.1343 -8.2892 -0.5890 24 6 3.0481 -8.7128 -2.0564 25 6 4.1943 -7.7199 -2.3212 26 6 4.5919 -7.8951 -0.8445 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 3.1568 -3.4353 0.0002 31 1 3.5833 -5.7304 0.0012 32 1 1.0816 -8.3802 3.0947 33 1 0.1895 -7.7711 1.6667 34 1 1.1544 -10.5745 2.2707 35 1 -0.2893 -10.0484 1.3537 36 1 2.1098 -8.4359 -2.5372 37 1 3.3225 -9.7536 -2.2281 38 1 4.9417 -8.0933 -3.0213 39 1 3.8524 -6.7139 -2.5644 40 1 5.3004 -8.7060 -0.6755 41 1 4.8862 -6.9654 -0.3576 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408365542.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:23 Heat of formation + Delta-G solvation = -52.001209 kcal Electronic energy + Delta-G solvation = -22483.298132 eV Core-core repulsion = 19170.687459 eV Total energy + Delta-G solvation = -3312.610673 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.57198 -40.50769 -38.65402 -36.22287 -35.50578 -34.41387 -33.27040 -31.49326 -29.23061 -26.74413 -25.93391 -25.38641 -24.26414 -22.89473 -21.86179 -21.24100 -20.02945 -19.14758 -18.00634 -17.92122 -17.21862 -16.85168 -16.36332 -16.28749 -16.17631 -15.89995 -15.05730 -14.98874 -14.84383 -14.30523 -14.03339 -13.85738 -13.53984 -13.22619 -13.06667 -12.89614 -12.72517 -12.60155 -12.49094 -12.22332 -12.19161 -11.78471 -11.54371 -11.46648 -11.27220 -11.20757 -10.84597 -10.80175 -10.51385 -10.15274 -9.56710 -8.28218 -6.44955 1.43567 1.46608 1.57515 1.87082 2.21610 2.39782 2.60777 3.06849 3.18524 3.40883 3.52642 3.61582 3.73260 3.82136 3.94303 4.07233 4.23409 4.31210 4.37152 4.44901 4.55822 4.74011 4.83932 4.87999 4.89231 4.89824 5.03595 5.05881 5.09632 5.13621 5.15477 5.26325 5.35727 5.48993 5.51850 5.60066 5.68169 5.84940 5.88887 6.26900 6.66965 7.24472 7.31632 7.72707 8.84275 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.003836 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.199023 B = 7298.049170 C = 7944.334566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.286 3.714 10 N -0.722 5.722 11 C 0.691 3.309 12 O -0.650 6.650 13 N -0.717 5.717 14 C 0.170 3.830 15 H 0.076 0.924 16 C -0.150 4.150 17 H 0.126 0.874 18 C -0.152 4.152 19 C 0.051 3.949 20 O -0.383 6.383 21 C 0.074 3.926 22 H 0.130 0.870 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.095 4.095 27 H 0.269 0.731 28 H -0.017 1.017 29 H -0.016 1.016 30 H 0.404 0.596 31 H 0.409 0.591 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.117 0.883 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.432 -20.187 1.811 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.163 3.837 10 N -0.376 5.376 11 C 0.391 3.609 12 O -0.533 6.533 13 N -0.373 5.373 14 C 0.064 3.936 15 H 0.094 0.906 16 C -0.170 4.170 17 H 0.144 0.856 18 C -0.189 4.189 19 C -0.026 4.026 20 O -0.303 6.303 21 C 0.016 3.984 22 H 0.148 0.852 23 C -0.107 4.107 24 C -0.159 4.159 25 C -0.176 4.176 26 C -0.133 4.133 27 H 0.077 0.923 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.240 0.760 31 H 0.247 0.753 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.116 -20.345 1.612 23.735 hybrid contribution 0.030 1.365 0.090 1.368 sum 12.146 -18.980 1.702 22.598 Atomic orbital electron populations 1.70150 1.08349 1.28566 1.49983 1.26077 0.95759 1.03911 0.93830 0.85131 0.78488 0.76830 0.78584 1.19626 1.20973 1.17793 1.21596 0.94322 0.90392 1.52895 0.89736 1.18390 0.88107 0.83429 0.93785 1.45293 1.10836 1.03775 1.77679 1.16374 0.85196 0.81654 0.77687 1.90834 1.16893 1.84913 1.60612 1.44889 1.08788 1.04015 1.79652 1.21993 0.97423 0.78094 0.96090 0.90597 1.24604 0.98295 0.97670 0.96417 0.85574 1.22892 0.96912 0.97166 1.01972 1.23550 0.97425 0.95209 0.86380 1.89230 1.30403 1.75546 1.35115 1.24133 0.88544 0.90253 0.95424 0.85234 1.23053 0.97774 0.94590 0.95286 1.22664 0.98664 1.00439 0.94165 1.22818 0.98299 0.99027 0.97485 1.22637 0.92172 1.02879 0.95585 0.92255 0.99944 0.99772 0.76035 0.75281 0.89011 0.93404 0.89723 0.89011 0.93820 0.88183 0.89441 0.91852 0.86452 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.99 42.46 29.54 68.60 2.03 44.49 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.55 -30.51 9.28 25.60 0.24 -30.27 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.29 16.21 5.43 85.63 0.46 16.68 16 10 N -0.72 -31.83 5.55 -482.30 -2.68 -34.51 16 11 C 0.69 29.84 8.57 179.05 1.53 31.37 16 12 O -0.65 -35.03 15.94 -3.99 -0.06 -35.09 16 13 N -0.72 -21.58 5.27 -456.66 -2.41 -23.99 16 14 C 0.17 4.77 3.40 45.23 0.15 4.93 16 15 H 0.08 2.83 7.26 -2.38 -0.02 2.82 16 16 C -0.15 -3.30 4.84 -9.30 -0.05 -3.35 16 17 H 0.13 2.36 8.14 -2.38 -0.02 2.34 16 18 C -0.15 -3.51 6.64 31.57 0.21 -3.30 16 19 C 0.05 1.00 7.64 72.47 0.55 1.55 16 20 O -0.38 -9.08 11.21 -148.98 -1.67 -10.75 16 21 C 0.07 1.38 5.28 31.26 0.16 1.55 16 22 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 23 C -0.11 -2.10 0.97 -52.25 -0.05 -2.15 16 24 C -0.12 -2.47 7.76 30.90 0.24 -2.23 16 25 C -0.14 -2.37 8.08 31.22 0.25 -2.11 16 26 C -0.10 -1.30 7.47 30.96 0.23 -1.07 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 29 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 30 H 0.40 14.54 8.34 -92.70 -0.77 13.77 16 31 H 0.41 9.28 6.70 -92.71 -0.62 8.66 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.47 7.90 -2.39 -0.02 1.45 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 0.97 6.38 -2.39 -0.02 0.96 16 Total: -1.00 -76.13 333.12 -0.45 -76.58 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.35 Total: 27.68 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 4.41 Total: 12.25 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -4.80 Total: -115.17 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -1.73 Total: -45.84 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -76.13 -0.45 -76.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365542.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.582 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds