Wall clock time and date at job start Tue Mar 31 2020 02:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48503 * 109.46803 * 270.00212 * 3 2 1 5 5 H 1.48499 * 109.46858 * 30.00123 * 3 2 1 6 6 H 1.48495 * 109.47198 * 150.00216 * 3 2 1 7 7 C 1.37880 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99813 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99843 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99770 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99883 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99975 * 179.97438 * 13 11 10 15 15 H 1.08998 * 113.50302 * 20.91835 * 14 13 11 16 16 C 1.51100 * 113.73186 * 245.17003 * 14 13 11 17 17 H 1.09001 * 116.57812 * 321.26417 * 16 14 13 18 18 C 1.52862 * 124.46510 * 115.73523 * 16 14 13 19 19 C 1.56099 * 100.14954 * 126.54765 * 18 16 14 20 20 O 1.45478 * 105.72505 * 336.74682 * 19 18 16 21 21 C 1.38581 * 107.04448 * 347.98701 * 20 19 18 22 22 H 1.09008 * 108.81784 * 285.94514 * 21 20 19 23 23 C 1.47395 * 138.52707 * 129.97257 * 21 20 19 24 24 C 1.52741 * 125.45733 * 100.16359 * 23 21 20 25 25 C 1.53984 * 86.72651 * 201.41701 * 24 23 21 26 26 C 1.52713 * 125.55806 * 342.57340 * 23 21 20 27 27 H 0.97005 * 120.00626 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46874 * 60.00163 * 9 7 2 29 29 H 1.09003 * 109.47078 * 300.00193 * 9 7 2 30 30 H 0.97006 * 120.00207 * 359.97438 * 10 9 7 31 31 H 0.97000 * 120.00301 * 359.97438 * 13 11 10 32 32 H 1.09002 * 111.28456 * 8.80702 * 18 16 14 33 33 H 1.08997 * 111.28341 * 244.28630 * 18 16 14 34 34 H 1.09006 * 110.19791 * 95.80612 * 19 18 16 35 35 H 1.08989 * 110.20152 * 217.68481 * 19 18 16 36 36 H 1.08996 * 113.67306 * 315.87306 * 24 23 21 37 37 H 1.09003 * 113.66842 * 86.96104 * 24 23 21 38 38 H 1.09002 * 113.57260 * 269.92827 * 25 24 23 39 39 H 1.09005 * 113.63887 * 139.17282 * 25 24 23 40 40 H 1.08995 * 113.67741 * 272.96438 * 26 23 21 41 41 H 1.09003 * 113.66586 * 44.04789 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6296 -5.9077 -0.0005 14 6 2.1413 -7.2889 -0.0005 15 1 1.1163 -7.3876 -0.3578 16 6 2.4857 -8.0557 1.2551 17 1 3.4720 -7.8742 1.6822 18 6 1.4572 -8.5927 2.2503 19 6 1.8901 -10.0912 2.3116 20 8 2.5994 -10.3479 1.0677 21 6 2.3650 -9.2650 0.2354 22 1 1.3429 -9.3240 -0.1389 23 6 3.1362 -8.3255 -0.5984 24 6 3.3041 -8.4182 -2.1137 25 6 4.5611 -7.5461 -1.9391 26 6 4.6387 -8.0732 -0.4942 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 3.1567 -3.4354 -0.0009 31 1 3.5833 -5.7305 -0.0002 32 1 0.4426 -8.4894 1.8653 33 1 1.5590 -8.1114 3.2229 34 1 2.5505 -10.2576 3.1627 35 1 1.0127 -10.7338 2.3839 36 1 3.5168 -9.4262 -2.4697 37 1 2.5064 -7.9292 -2.6730 38 1 4.3618 -6.4764 -2.0028 39 1 5.3993 -7.8578 -2.5625 40 1 4.9046 -7.3094 0.2365 41 1 5.2292 -8.9836 -0.3916 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408365544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:29 Heat of formation + Delta-G solvation = 29.540210 kcal Electronic energy + Delta-G solvation = -22431.605569 eV Core-core repulsion = 19122.530798 eV Total energy + Delta-G solvation = -3309.074772 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51590 -39.02173 -38.18389 -34.77473 -34.03788 -32.81952 -32.00970 -30.77584 -27.19989 -26.23749 -24.71846 -24.06810 -22.40195 -21.89596 -20.65187 -20.16287 -18.75899 -17.94407 -17.12369 -16.29776 -16.07190 -15.59638 -15.35745 -15.01171 -14.63192 -14.46287 -14.38545 -13.64136 -13.18382 -12.94985 -12.68406 -12.52862 -12.06308 -12.01581 -11.96000 -11.62130 -11.53579 -11.38306 -11.27257 -10.95486 -10.90919 -10.68171 -10.50378 -10.30290 -9.70138 -9.48771 -9.37473 -9.15657 -8.75377 -8.63976 -7.77267 -6.15457 -4.22047 2.74367 3.24607 3.29917 3.32427 3.42368 3.77036 3.96946 4.19170 4.32802 4.42375 4.46311 4.57868 4.65585 4.88386 4.98308 5.10618 5.15501 5.20751 5.26201 5.27767 5.33033 5.51588 5.54952 5.59129 5.64379 5.73245 5.78357 5.87111 5.92427 6.00537 6.20294 6.21725 6.77839 6.93257 7.11972 7.50501 7.54879 7.56968 7.90141 8.03924 8.76085 8.93063 9.32190 9.47571 10.94773 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.003715 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.286970 B = 7534.634284 C = 8098.602181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.694 3.306 12 O -0.601 6.601 13 N -0.741 5.741 14 C 0.189 3.811 15 H 0.132 0.868 16 C -0.188 4.188 17 H 0.116 0.884 18 C -0.143 4.143 19 C 0.054 3.946 20 O -0.358 6.358 21 C 0.046 3.954 22 H 0.077 0.923 23 C -0.078 4.078 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.113 4.113 27 H 0.266 0.734 28 H 0.025 0.975 29 H 0.024 0.976 30 H 0.386 0.614 31 H 0.392 0.608 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.038 -18.687 0.608 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.380 5.380 11 C 0.394 3.606 12 O -0.480 6.480 13 N -0.396 5.396 14 C 0.082 3.918 15 H 0.150 0.850 16 C -0.208 4.208 17 H 0.134 0.866 18 C -0.181 4.181 19 C -0.022 4.022 20 O -0.277 6.277 21 C -0.014 4.014 22 H 0.094 0.906 23 C -0.079 4.079 24 C -0.165 4.165 25 C -0.176 4.176 26 C -0.150 4.150 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.218 0.782 31 H 0.226 0.774 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.820 -18.863 0.578 20.428 hybrid contribution 1.156 1.187 0.223 1.671 sum 8.976 -17.677 0.801 19.841 Atomic orbital electron populations 1.69976 1.06092 1.27263 1.48954 1.24940 0.94901 0.99382 0.94762 0.86419 0.79605 0.82694 0.78198 1.20479 1.21015 1.19786 1.21227 0.93254 0.90451 1.53115 0.91970 1.18980 0.87770 0.81059 0.97600 1.45731 1.10772 1.04437 1.77101 1.16171 0.85232 0.81063 0.78141 1.90862 1.14227 1.84188 1.58708 1.45073 1.08762 1.04466 1.81341 1.21993 0.97936 0.78436 0.93461 0.84998 1.25117 1.00852 1.00114 0.94760 0.86587 1.22677 0.99699 0.94804 1.00928 1.24196 0.96097 0.95652 0.86241 1.87712 1.73657 1.40648 1.25670 1.22470 0.98572 0.84216 0.96129 0.90570 1.22589 0.96315 0.93752 0.95250 1.22781 0.98654 1.00479 0.94536 1.22848 0.98150 1.00301 0.96324 1.22646 0.93143 1.01598 0.97622 0.92464 0.95728 0.95761 0.78209 0.77411 0.90021 0.90208 0.90259 0.91196 0.89746 0.90647 0.89672 0.91134 0.91039 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.69 9.28 -34.44 -0.32 -15.01 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 7.12 5.43 -5.19 -0.03 7.09 16 10 N -0.73 -15.39 5.55 -66.41 -0.37 -15.76 16 11 C 0.69 14.03 8.57 -86.92 -0.74 13.28 16 12 O -0.60 -14.72 15.93 5.29 0.08 -14.63 16 13 N -0.74 -10.74 5.08 -70.27 -0.36 -11.10 16 14 C 0.19 2.46 3.96 -79.26 -0.31 2.15 16 15 H 0.13 1.97 6.88 -51.93 -0.36 1.61 16 16 C -0.19 -2.19 4.27 -104.03 -0.44 -2.63 16 17 H 0.12 1.30 6.92 -51.93 -0.36 0.94 16 18 C -0.14 -1.55 6.75 -25.14 -0.17 -1.72 16 19 C 0.05 0.52 7.87 38.82 0.31 0.82 16 20 O -0.36 -4.34 11.31 -28.51 -0.32 -4.67 16 21 C 0.05 0.52 5.00 -38.08 -0.19 0.33 16 22 H 0.08 0.89 7.20 -51.92 -0.37 0.51 16 23 C -0.08 -0.82 1.14 -171.61 -0.20 -1.01 16 24 C -0.13 -1.24 7.90 -26.35 -0.21 -1.45 16 25 C -0.14 -1.24 7.80 -25.71 -0.20 -1.44 16 26 C -0.11 -1.01 6.53 -26.36 -0.17 -1.19 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 31 H 0.39 4.66 6.78 -40.82 -0.28 4.38 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.59 8.14 -51.94 -0.42 0.16 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.83 7.59 -51.93 -0.39 0.43 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.61 6.69 -51.93 -0.35 0.26 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 329.70 15.07 4.97 4.97 Total: -1.00 -32.35 329.70 -9.27 -41.62 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.21 Total: 8.27 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.78 Total: 0.89 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.01 Total: -52.23 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.24 Total: -19.30 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.35 -9.27 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.163 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds