Wall clock time and date at job start Tue Mar 31 2020 02:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48503 * 109.46803 * 270.00212 * 3 2 1 5 5 H 1.48499 * 109.46858 * 30.00123 * 3 2 1 6 6 H 1.48495 * 109.47198 * 150.00216 * 3 2 1 7 7 C 1.37880 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99813 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46870 * 180.02562 * 9 7 2 11 11 C 1.34778 * 119.99843 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99770 * 359.97438 * 11 10 9 13 13 N 1.34773 * 119.99883 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99975 * 179.97438 * 13 11 10 15 15 H 1.08998 * 113.50302 * 20.91835 * 14 13 11 16 16 C 1.51100 * 113.73186 * 245.17003 * 14 13 11 17 17 H 1.09001 * 116.57812 * 321.26417 * 16 14 13 18 18 C 1.52862 * 124.46510 * 115.73523 * 16 14 13 19 19 C 1.56099 * 100.14954 * 126.54765 * 18 16 14 20 20 O 1.45478 * 105.72505 * 336.74682 * 19 18 16 21 21 C 1.38581 * 107.04448 * 347.98701 * 20 19 18 22 22 H 1.09008 * 108.81784 * 285.94514 * 21 20 19 23 23 C 1.47395 * 138.52707 * 129.97257 * 21 20 19 24 24 C 1.52741 * 125.45733 * 100.16359 * 23 21 20 25 25 C 1.53984 * 86.72651 * 201.41701 * 24 23 21 26 26 C 1.52713 * 125.55806 * 342.57340 * 23 21 20 27 27 H 0.97005 * 120.00626 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.46874 * 60.00163 * 9 7 2 29 29 H 1.09003 * 109.47078 * 300.00193 * 9 7 2 30 30 H 0.97006 * 120.00207 * 359.97438 * 10 9 7 31 31 H 0.97000 * 120.00301 * 359.97438 * 13 11 10 32 32 H 1.09002 * 111.28456 * 8.80702 * 18 16 14 33 33 H 1.08997 * 111.28341 * 244.28630 * 18 16 14 34 34 H 1.09006 * 110.19791 * 95.80612 * 19 18 16 35 35 H 1.08989 * 110.20152 * 217.68481 * 19 18 16 36 36 H 1.08996 * 113.67306 * 315.87306 * 24 23 21 37 37 H 1.09003 * 113.66842 * 86.96104 * 24 23 21 38 38 H 1.09002 * 113.57260 * 269.92827 * 25 24 23 39 39 H 1.09005 * 113.63887 * 139.17282 * 25 24 23 40 40 H 1.08995 * 113.67741 * 272.96438 * 26 23 21 41 41 H 1.09003 * 113.66586 * 44.04789 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5584 -5.1055 -0.0011 13 7 2.6296 -5.9077 -0.0005 14 6 2.1413 -7.2889 -0.0005 15 1 1.1163 -7.3876 -0.3578 16 6 2.4857 -8.0557 1.2551 17 1 3.4720 -7.8742 1.6822 18 6 1.4572 -8.5927 2.2503 19 6 1.8901 -10.0912 2.3116 20 8 2.5994 -10.3479 1.0677 21 6 2.3650 -9.2650 0.2354 22 1 1.3429 -9.3240 -0.1389 23 6 3.1362 -8.3255 -0.5984 24 6 3.3041 -8.4182 -2.1137 25 6 4.5611 -7.5461 -1.9391 26 6 4.6387 -8.0732 -0.4942 27 1 -0.4851 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 3.1567 -3.4354 -0.0009 31 1 3.5833 -5.7305 -0.0002 32 1 0.4426 -8.4894 1.8653 33 1 1.5590 -8.1114 3.2229 34 1 2.5505 -10.2576 3.1627 35 1 1.0127 -10.7338 2.3839 36 1 3.5168 -9.4262 -2.4697 37 1 2.5064 -7.9292 -2.6730 38 1 4.3618 -6.4764 -2.0028 39 1 5.3993 -7.8578 -2.5625 40 1 4.9046 -7.3094 0.2365 41 1 5.2292 -8.9836 -0.3916 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408365544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:28 Heat of formation + Delta-G solvation = 6.567530 kcal Electronic energy + Delta-G solvation = -22432.601739 eV Core-core repulsion = 19122.530798 eV Total energy + Delta-G solvation = -3310.070942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.46142 -40.61596 -39.11813 -36.22953 -35.62367 -34.50686 -33.63700 -31.65329 -29.21076 -27.01135 -25.76786 -25.25129 -24.11677 -22.76752 -21.86919 -21.58191 -20.04445 -19.25020 -18.22667 -17.96085 -17.15566 -16.86449 -16.59133 -16.28141 -16.07277 -16.01081 -15.47949 -14.88601 -14.83251 -14.17376 -14.01940 -13.82117 -13.61618 -13.27882 -12.96859 -12.88334 -12.71885 -12.52878 -12.47464 -12.22474 -12.21067 -12.13961 -11.60545 -11.46258 -11.30411 -11.25709 -10.79218 -10.55955 -10.13853 -10.10519 -9.54593 -8.27254 -6.43595 1.44361 1.47113 1.57832 1.70285 2.08945 2.20850 2.40939 2.99566 3.07942 3.30513 3.41815 3.52653 3.66212 3.73118 3.89472 4.05096 4.15394 4.31690 4.34996 4.44724 4.50450 4.54023 4.77471 4.82466 4.85538 4.88557 4.99554 5.05543 5.10598 5.11122 5.16615 5.28564 5.29339 5.47279 5.50185 5.55446 5.68602 5.86338 6.03298 6.25979 6.68278 7.25568 7.31209 7.72738 8.85086 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.027065 B = 0.003715 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.286970 B = 7534.634284 C = 8098.602181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.722 5.722 11 C 0.694 3.306 12 O -0.648 6.648 13 N -0.714 5.714 14 C 0.171 3.829 15 H 0.107 0.893 16 C -0.189 4.189 17 H 0.129 0.871 18 C -0.147 4.147 19 C 0.056 3.944 20 O -0.371 6.371 21 C 0.050 3.950 22 H 0.066 0.934 23 C -0.067 4.067 24 C -0.130 4.130 25 C -0.135 4.135 26 C -0.105 4.105 27 H 0.268 0.732 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.404 0.596 31 H 0.409 0.591 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.165 -19.060 0.905 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.163 3.837 10 N -0.376 5.376 11 C 0.394 3.606 12 O -0.531 6.531 13 N -0.370 5.370 14 C 0.065 3.935 15 H 0.124 0.876 16 C -0.208 4.208 17 H 0.147 0.853 18 C -0.185 4.185 19 C -0.019 4.019 20 O -0.290 6.290 21 C -0.009 4.009 22 H 0.083 0.917 23 C -0.068 4.068 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.142 4.142 27 H 0.077 0.923 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.240 0.760 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.028 -19.298 0.876 22.244 hybrid contribution 0.119 1.187 0.140 1.201 sum 11.147 -18.112 1.017 21.291 Atomic orbital electron populations 1.70141 1.08286 1.28540 1.50007 1.26051 0.95749 1.03830 0.93884 0.85152 0.78484 0.76964 0.78572 1.19622 1.21027 1.17895 1.21603 0.94317 0.90459 1.52836 0.89800 1.18399 0.88090 0.83338 0.93919 1.45299 1.10865 1.03805 1.77598 1.16308 0.85133 0.81557 0.77643 1.90833 1.16718 1.84882 1.60630 1.44777 1.08821 1.03816 1.79547 1.22103 0.97828 0.77757 0.95789 0.87567 1.25154 1.01536 0.99410 0.94745 0.85299 1.22711 0.98876 0.96004 1.00922 1.24314 0.96940 0.94668 0.85938 1.87691 1.74027 1.40818 1.26431 1.22369 0.98405 0.84028 0.96138 0.91659 1.22513 0.96885 0.91559 0.95842 1.22850 0.98861 1.01421 0.93606 1.22826 0.98117 0.99583 0.96672 1.22690 0.91338 1.02410 0.97778 0.92268 0.99667 0.99724 0.76049 0.75367 0.91380 0.89641 0.88309 0.89961 0.88391 0.92015 0.90522 0.89367 0.90195 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.99 42.11 29.54 68.60 2.03 44.13 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.55 -30.11 9.28 25.60 0.24 -29.87 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.29 15.86 5.43 85.63 0.46 16.32 16 10 N -0.72 -30.93 5.55 -482.30 -2.68 -33.61 16 11 C 0.69 28.71 8.57 179.06 1.53 30.24 16 12 O -0.65 -33.39 15.93 -3.98 -0.06 -33.45 16 13 N -0.71 -20.41 5.08 -494.49 -2.51 -22.92 16 14 C 0.17 4.47 3.96 37.65 0.15 4.62 16 15 H 0.11 3.37 6.88 -2.39 -0.02 3.35 16 16 C -0.19 -4.18 4.27 -19.48 -0.08 -4.27 16 17 H 0.13 2.56 6.92 -2.39 -0.02 2.55 16 18 C -0.15 -3.10 6.75 31.62 0.21 -2.88 16 19 C 0.06 0.99 7.87 73.06 0.58 1.57 16 20 O -0.37 -8.32 11.31 -124.92 -1.41 -9.73 16 21 C 0.05 1.10 5.00 23.24 0.12 1.21 16 22 H 0.07 1.55 7.20 -2.38 -0.02 1.54 16 23 C -0.07 -1.31 1.14 -63.26 -0.07 -1.38 16 24 C -0.13 -2.35 7.90 30.84 0.24 -2.10 16 25 C -0.13 -2.06 7.80 31.25 0.24 -1.82 16 26 C -0.11 -1.57 6.53 30.84 0.20 -1.37 16 27 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 28 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H 0.40 14.15 8.34 -92.70 -0.77 13.38 16 31 H 0.41 8.99 6.78 -92.71 -0.63 8.36 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.32 7.59 -2.39 -0.02 1.30 16 39 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.08 1.08 6.69 -2.39 -0.02 1.07 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.32 329.70 -0.42 -72.74 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -0.35 Total: 27.84 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 4.29 Total: 10.97 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -4.90 Total: -112.50 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.48 Total: -43.18 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -72.32 -0.42 -72.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408365544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.310 kcal (2) G-P(sol) polarization free energy of solvation -72.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds