Wall clock time and date at job start Tue Mar 31 2020 02:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 C 1.50696 * 109.47036 * 180.02562 * 14 12 11 16 16 O 1.21284 * 120.00206 * 359.97438 * 15 14 12 17 17 N 1.34779 * 119.99997 * 179.97438 * 15 14 12 18 18 C 1.46504 * 119.99824 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.46893 * 180.02562 * 18 17 15 20 20 C 1.53005 * 117.49726 * 243.62552 * 19 18 17 21 21 C 1.52996 * 60.00044 * 252.51050 * 20 19 18 22 22 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 23 23 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 24 24 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 25 25 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 26 26 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 27 27 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 28 28 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 29 29 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 30 30 H 0.97001 * 120.00015 * 0.02562 * 17 15 14 31 31 H 1.08993 * 109.47309 * 300.00449 * 18 17 15 32 32 H 1.09002 * 109.47046 * 60.00545 * 18 17 15 33 33 H 1.08994 * 115.55511 * 29.33233 * 19 18 17 34 34 H 1.09002 * 117.50118 * 0.02562 * 20 19 18 35 35 H 1.08999 * 117.49641 * 145.02260 * 20 19 18 36 36 H 1.09002 * 117.50182 * 252.51113 * 21 20 19 37 37 H 1.09004 * 117.50253 * 107.48625 * 21 20 19 38 38 H 1.08997 * 117.49622 * 359.97438 * 22 9 7 39 39 H 1.09000 * 117.49928 * 145.02150 * 22 9 7 40 40 H 1.08996 * 117.50254 * 214.97905 * 23 9 7 41 41 H 1.09005 * 117.49689 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 6 3.0470 -4.6212 5.6001 16 8 1.8886 -4.7618 5.9309 17 7 4.0364 -4.9666 6.4476 18 6 3.7127 -5.5113 7.7685 19 6 5.0068 -5.8175 8.5250 20 6 5.2871 -7.2785 8.8828 21 6 4.8827 -6.2872 9.9759 22 6 1.5731 -3.5804 -0.9271 23 6 0.2453 -2.8219 -0.9976 24 1 -0.4851 0.8368 -0.0732 25 1 0.3750 -2.1615 2.0429 26 1 0.3014 -3.8500 1.4844 27 1 3.0164 -3.0718 1.8343 28 1 3.9647 -4.7898 3.6811 29 1 3.9582 -3.1438 4.3583 30 1 4.9629 -4.8538 6.1832 31 1 3.1284 -4.7818 8.3291 32 1 3.1341 -6.4277 7.6518 33 1 5.8600 -5.1888 8.2708 34 1 4.5497 -8.0216 8.5789 35 1 6.3249 -7.6111 8.8640 36 1 5.6545 -5.9676 10.6761 37 1 3.8791 -6.3779 10.3914 38 1 2.3246 -3.3505 -1.6824 39 1 1.5429 -4.6177 -0.5938 40 1 -0.6578 -3.3606 -0.7107 41 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435954443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:12 Heat of formation + Delta-G solvation = -52.172203 kcal Electronic energy + Delta-G solvation = -21226.760841 eV Core-core repulsion = 17914.142754 eV Total energy + Delta-G solvation = -3312.618088 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25551 -39.89133 -38.52753 -38.14298 -35.18733 -34.78122 -33.93692 -31.88763 -28.41273 -27.61506 -26.62814 -23.24152 -22.95389 -22.06282 -21.90694 -21.30484 -20.67102 -18.41919 -18.21534 -17.67737 -17.02619 -16.86057 -16.58829 -16.38673 -15.95676 -15.47706 -15.35663 -14.95032 -14.64494 -14.30850 -14.23272 -14.10311 -13.66297 -13.42693 -12.92682 -12.86592 -12.74528 -12.38149 -12.34847 -12.29145 -12.00658 -11.45855 -11.37890 -11.14190 -11.05774 -10.91896 -10.50164 -10.41562 -10.01373 -9.98725 -9.77681 -8.07345 -6.22002 1.43369 1.46935 1.56268 1.68082 1.84844 1.94173 2.43924 2.62948 2.90970 3.21097 3.50631 3.66194 3.72714 3.99791 4.06724 4.16974 4.27410 4.29384 4.43442 4.49363 4.57895 4.67480 4.70235 4.74779 4.76167 4.82203 5.01946 5.04679 5.06961 5.21693 5.27264 5.30142 5.52024 5.58032 5.64342 5.74657 5.80788 6.38485 6.61768 6.83949 6.89197 7.35113 7.48096 7.54758 9.00062 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.025805 B = 0.003086 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.804041 B = 9071.632202 C = 9600.886220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.254 1.254 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.500 4.500 8 H 0.071 0.929 9 C 0.004 3.996 10 C 0.181 3.819 11 N -0.698 5.698 12 C 0.494 3.506 13 O -0.573 6.573 14 C -0.149 4.149 15 C 0.506 3.494 16 O -0.559 6.559 17 N -0.713 5.713 18 C 0.150 3.850 19 C -0.167 4.167 20 C -0.175 4.175 21 C -0.174 4.174 22 C -0.173 4.173 23 C -0.160 4.160 24 H 0.257 0.743 25 H 0.020 0.980 26 H 0.031 0.969 27 H 0.414 0.586 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.420 0.580 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.349 -11.125 12.906 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.779 3.221 4 H -0.178 1.178 5 H -0.213 1.213 6 H -0.218 1.218 7 C -0.538 4.538 8 H 0.089 0.911 9 C 0.004 3.996 10 C 0.056 3.944 11 N -0.350 5.350 12 C 0.280 3.720 13 O -0.451 6.451 14 C -0.191 4.191 15 C 0.292 3.708 16 O -0.436 6.436 17 N -0.368 5.368 18 C 0.027 3.973 19 C -0.186 4.186 20 C -0.211 4.211 21 C -0.211 4.211 22 C -0.210 4.210 23 C -0.198 4.198 24 H 0.066 0.934 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.250 0.750 28 H 0.183 0.817 29 H 0.176 0.824 30 H 0.258 0.742 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.593 -11.263 13.577 23.544 hybrid contribution 0.177 1.285 -0.443 1.371 sum 15.770 -9.978 13.134 22.820 Atomic orbital electron populations 1.70142 1.07493 1.27194 1.50141 1.25784 0.95468 1.02379 0.94501 0.85591 0.79793 0.79862 0.76891 1.17785 1.21277 1.21800 1.20739 0.93185 0.89254 1.50613 0.91124 1.19079 1.00073 0.94132 0.86365 1.20489 0.85488 0.95844 0.92586 1.45795 1.10408 1.63549 1.15260 1.20905 0.91739 0.77553 0.81797 1.90802 1.32964 1.53494 1.67880 1.21607 0.96731 1.07419 0.93317 1.20564 0.85223 0.77988 0.87034 1.90858 1.21820 1.53652 1.77236 1.45763 1.09872 1.65490 1.15679 1.20804 0.96080 0.97842 0.82620 1.22391 0.98374 0.99328 0.98472 1.23156 1.03375 0.91730 1.02884 1.23054 1.03520 1.03454 0.91104 1.22999 0.98633 0.95846 1.03520 1.22393 0.92201 1.02025 1.03166 0.93358 0.96178 0.95082 0.74962 0.81719 0.82396 0.74203 0.92946 0.93017 0.85180 0.89219 0.87057 0.86994 0.89076 0.89296 0.89437 0.91749 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.11 12.65 21.45 0.27 -51.84 16 2 C 0.02 1.00 5.43 84.66 0.46 1.46 16 3 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.50 -24.99 8.59 25.60 0.22 -24.77 16 8 H 0.07 3.32 7.82 -2.91 -0.02 3.30 16 9 C 0.00 0.20 1.47 -52.93 -0.08 0.12 16 10 C 0.18 8.42 5.50 86.38 0.48 8.90 16 11 N -0.70 -25.79 5.48 -463.06 -2.54 -28.33 16 12 C 0.49 18.22 7.82 87.66 0.69 18.91 16 13 O -0.57 -28.38 14.18 20.43 0.29 -28.09 16 14 C -0.15 -3.24 6.19 29.10 0.18 -3.06 16 15 C 0.51 13.95 7.82 87.66 0.69 14.64 16 16 O -0.56 -23.22 14.18 20.40 0.29 -22.93 16 17 N -0.71 -12.48 5.56 -463.06 -2.57 -15.06 16 18 C 0.15 2.78 5.96 86.38 0.51 3.29 16 19 C -0.17 -1.88 5.85 -10.79 -0.06 -1.94 16 20 C -0.17 -1.76 10.18 30.59 0.31 -1.45 16 21 C -0.17 -1.82 10.25 30.59 0.31 -1.51 16 22 C -0.17 -6.81 9.96 30.62 0.30 -6.50 16 23 C -0.16 -7.42 9.14 30.62 0.28 -7.14 16 24 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 25 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16 27 H 0.41 12.67 8.33 -92.71 -0.77 11.89 16 28 H 0.17 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.42 3.69 8.40 -92.71 -0.78 2.91 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.13 7.88 -2.39 -0.02 1.11 16 33 H 0.13 0.98 8.04 -2.39 -0.02 0.96 16 34 H 0.09 1.05 8.03 -2.39 -0.02 1.03 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.06 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -79.10 351.53 1.54 -77.56 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.51 Total: 24.06 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 4.29 Total: 0.94 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -4.84 Total: -95.22 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: 0.58 Total: -51.02 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -79.10 1.54 -77.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435954443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.391 kcal (2) G-P(sol) polarization free energy of solvation -79.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds