Wall clock time and date at job start Tue Mar 31 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99792 * 2 1 4 4 H 1.48501 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46644 * 299.99808 * 3 2 1 6 6 H 1.48497 * 109.47275 * 60.00154 * 3 2 1 7 7 C 1.38947 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00139 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99907 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99562 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00318 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99895 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47607 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00244 * 180.02562 * 13 12 10 15 15 O 1.21613 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.47103 * 120.00155 * 180.02562 * 14 13 12 17 17 C 1.32994 * 120.00523 * 173.03058 * 16 14 13 18 18 C 1.50702 * 119.99488 * 352.50894 * 17 16 14 19 19 C 1.53006 * 109.46740 * 205.36006 * 18 17 16 20 20 C 1.53008 * 109.46806 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47122 * 60.00256 * 20 19 18 22 22 C 1.53006 * 109.47071 * 299.99582 * 21 20 19 23 23 C 1.52999 * 109.47309 * 85.35912 * 18 17 16 24 24 H 0.96996 * 120.00081 * 359.97438 * 1 2 3 25 25 H 0.96995 * 120.00190 * 0.02562 * 9 7 2 26 26 H 1.09009 * 109.47081 * 60.00111 * 12 10 9 27 27 H 1.09004 * 109.47360 * 300.00599 * 12 10 9 28 28 H 0.97001 * 119.99850 * 359.97438 * 13 12 10 29 29 H 1.08000 * 119.99942 * 353.03018 * 16 14 13 30 30 H 1.07997 * 120.00490 * 172.50826 * 17 16 14 31 31 H 1.09004 * 109.47109 * 325.35310 * 18 17 16 32 32 H 1.08999 * 109.47119 * 60.00312 * 19 18 17 33 33 H 1.08995 * 109.46909 * 299.99805 * 19 18 17 34 34 H 1.09004 * 109.46822 * 179.97438 * 20 19 18 35 35 H 1.08994 * 109.46812 * 299.99837 * 20 19 18 36 36 H 1.08995 * 109.47518 * 59.99533 * 21 20 19 37 37 H 1.09002 * 109.46929 * 180.02562 * 21 20 19 38 38 H 1.08990 * 109.47265 * 180.02562 * 22 21 20 39 39 H 1.08995 * 109.46909 * 300.00324 * 22 21 20 40 40 H 1.09000 * 109.46905 * 60.00328 * 23 18 17 41 41 H 1.08990 * 109.47224 * 299.99671 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9974 -3.5578 0.0016 11 8 3.2103 -3.5577 0.0011 12 6 1.2440 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7467 -7.2471 0.0027 15 8 0.5511 -7.4694 0.0028 16 6 2.7026 -8.3652 0.0038 17 6 2.2658 -9.6135 0.1436 18 6 0.8174 -9.8728 0.4692 19 6 0.6879 -11.2225 1.1782 20 6 -0.7826 -11.4855 1.5094 21 6 -1.6004 -11.5081 0.2165 22 6 -1.4708 -10.1585 -0.4926 23 6 0.0001 -9.8956 -0.8241 24 1 -0.4850 0.8400 0.0004 25 1 0.3535 -2.3906 0.0016 26 1 0.6169 -4.9209 -0.8876 27 1 0.6175 -4.9205 0.8924 28 1 3.1496 -5.7992 0.0022 29 1 3.7593 -8.1724 -0.1090 30 1 2.9489 -10.4414 0.0238 31 1 0.4444 -9.0828 1.1209 32 1 1.2701 -11.2062 2.0996 33 1 1.0609 -12.0125 0.5266 34 1 -0.8750 -12.4472 2.0141 35 1 -1.1552 -10.6954 2.1612 36 1 -1.2277 -12.2982 -0.4354 37 1 -2.6480 -11.6951 0.4525 38 1 -2.0537 -10.1745 -1.4134 39 1 -1.8434 -9.3684 0.1593 40 1 0.3731 -10.6858 -1.4757 41 1 0.0924 -8.9342 -1.3291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492916637.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:42 Heat of formation + Delta-G solvation = -100.818534 kcal Electronic energy + Delta-G solvation = -21460.634560 eV Core-core repulsion = 18145.907009 eV Total energy + Delta-G solvation = -3314.727551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16935 -40.15391 -39.02007 -36.26370 -35.31014 -34.59651 -33.39035 -31.52783 -30.85492 -29.12000 -26.56808 -24.27171 -23.36254 -22.49887 -21.38259 -20.67464 -20.46358 -19.94879 -18.20857 -17.25835 -17.07597 -16.68759 -16.52365 -16.03773 -15.65827 -15.49698 -15.19372 -14.88419 -14.71919 -14.48499 -14.13556 -13.87322 -13.62749 -13.56335 -13.25327 -12.95904 -12.90958 -12.57862 -12.46295 -12.12430 -12.06086 -11.90616 -11.59459 -11.36090 -11.17101 -10.92692 -10.57544 -10.48972 -10.23513 -10.12205 -9.90570 -8.52610 -6.02988 0.50163 1.34055 1.41861 1.56095 1.88680 2.13819 2.34982 2.36229 3.13538 3.14547 3.72436 3.91679 3.96626 4.01165 4.22661 4.29504 4.39888 4.43468 4.45912 4.50279 4.60841 4.70831 4.72168 4.79553 4.88853 4.98058 5.18876 5.22846 5.28818 5.33324 5.36073 5.37253 5.43181 5.49613 5.55401 5.64865 5.80348 5.91009 6.45779 6.64432 7.02096 7.28518 7.43432 7.92958 8.64625 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.036920 B = 0.002872 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.224721 B = 9747.980637 C =10258.362977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.125 3.875 13 N -0.710 5.710 14 C 0.531 3.469 15 O -0.561 6.561 16 C -0.232 4.232 17 C -0.042 4.042 18 C -0.070 4.070 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.116 4.116 23 C -0.095 4.095 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.411 0.589 29 H 0.150 0.850 30 H 0.160 0.840 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -22.249 0.603 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.004 4.004 13 N -0.363 5.363 14 C 0.322 3.678 15 O -0.443 6.443 16 C -0.253 4.253 17 C -0.061 4.061 18 C -0.088 4.088 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.153 4.153 23 C -0.132 4.132 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.249 0.751 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.409 -22.198 0.603 22.210 hybrid contribution 0.127 1.471 -0.010 1.476 sum -0.282 -20.727 0.593 20.738 Atomic orbital electron populations 1.69686 1.07025 1.29596 1.49368 1.26143 0.96548 1.02713 0.95764 0.84806 0.78118 0.76667 0.78356 1.19431 1.19576 1.19566 1.19774 0.92941 0.83568 1.50347 0.89633 1.41865 1.09571 1.04666 1.63481 1.20481 0.88137 0.85999 0.83447 1.90468 1.15230 1.87580 1.58006 1.20700 0.91765 0.84050 1.03836 1.45722 1.11083 1.04735 1.74788 1.19254 0.89198 0.83185 0.76160 1.90747 1.17696 1.84689 1.51137 1.22674 0.99972 0.92380 1.10277 1.24093 0.97400 0.96443 0.88192 1.20531 0.92182 0.98197 0.97908 1.21652 0.96718 0.96088 1.00436 1.21521 0.95290 1.01584 0.97322 1.21531 1.00038 0.96805 0.96891 1.21466 0.96442 0.97493 0.99937 1.21361 0.94640 1.00894 0.96325 0.91050 0.76744 0.89113 0.89153 0.75103 0.83283 0.82253 0.91117 0.91549 0.90416 0.90616 0.93468 0.91059 0.91877 0.92292 0.93995 0.91834 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 3 Si 1.00 42.01 29.55 68.60 2.03 44.04 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.34 -18.77 9.68 84.04 0.81 -17.95 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.55 5.29 -306.98 -1.62 -30.18 16 10 C 0.43 20.29 7.85 87.66 0.69 20.98 16 11 O -0.62 -32.80 15.24 -3.06 -0.05 -32.85 16 12 C 0.12 4.64 6.15 85.63 0.53 5.16 16 13 N -0.71 -23.65 5.52 -470.44 -2.60 -26.25 16 14 C 0.53 16.19 7.58 86.57 0.66 16.85 16 15 O -0.56 -19.36 11.04 -4.07 -0.04 -19.41 16 16 C -0.23 -5.13 10.02 23.43 0.23 -4.90 16 17 C -0.04 -0.76 8.85 24.52 0.22 -0.54 16 18 C -0.07 -1.48 1.62 -11.54 -0.02 -1.50 16 19 C -0.11 -1.74 5.18 30.60 0.16 -1.58 16 20 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 21 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 22 C -0.12 -2.49 5.93 30.61 0.18 -2.31 16 23 C -0.09 -2.14 4.61 30.61 0.14 -2.00 16 24 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 25 H 0.40 19.53 7.90 -92.71 -0.73 18.79 16 26 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 27 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.41 13.59 7.42 -92.71 -0.69 12.91 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.16 1.73 8.05 -2.91 -0.02 1.71 16 31 H 0.07 2.00 6.12 -2.39 -0.01 1.98 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.46 6.11 -2.39 -0.01 1.44 16 Total: -1.00 -64.91 334.53 2.05 -62.86 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.38 Total: 41.93 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 4.43 Total: 8.63 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -3.94 Total: -105.20 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -0.09 Total: -52.26 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.91 2.05 -62.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492916637.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.956 kcal (2) G-P(sol) polarization free energy of solvation -64.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds