Wall clock time and date at job start Tue Mar 31 2020 01:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31744 * 119.05986 * 2 1 4 4 C 1.32580 * 121.02534 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.41347 * 179.97438 * 4 3 2 6 6 C 1.38274 * 119.17043 * 359.97438 * 4 3 2 7 7 F 1.35094 * 120.85235 * 180.02562 * 6 4 3 8 8 C 1.39813 * 118.29297 * 0.02562 * 6 4 3 9 9 N 1.38683 * 120.53965 * 180.25630 * 8 6 4 10 10 C 1.46895 * 110.99839 * 304.01841 * 9 8 6 11 11 C 1.53238 * 109.34281 * 172.74681 * 10 9 8 12 12 N 1.47078 * 108.51898 * 53.83032 * 11 10 9 13 13 C 1.36941 * 120.88315 * 128.84069 * 12 11 10 14 14 H 1.07999 * 119.99954 * 206.56230 * 13 12 11 15 15 C 1.38807 * 119.99628 * 26.55538 * 13 12 11 16 16 N 1.31621 * 120.00099 * 17.03537 * 15 13 12 17 17 Si 1.86805 * 119.99930 * 197.03104 * 15 13 12 18 18 H 1.48502 * 109.47171 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47068 * 120.00500 * 17 15 13 20 20 H 1.48505 * 109.46941 * 240.00372 * 17 15 13 21 21 C 1.47083 * 118.24021 * 308.81616 * 12 11 10 22 22 C 1.46899 * 110.99788 * 179.72035 * 9 8 6 23 23 N 1.31779 * 119.05786 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47871 * 269.98183 * 1 2 3 25 25 H 1.09004 * 109.46949 * 29.98525 * 1 2 3 26 26 H 1.09001 * 109.47026 * 149.98192 * 1 2 3 27 27 H 1.09004 * 109.47154 * 89.99960 * 5 4 3 28 28 H 1.09001 * 109.47068 * 209.99761 * 5 4 3 29 29 H 1.09000 * 109.47507 * 329.99929 * 5 4 3 30 30 H 1.08997 * 109.49923 * 292.71099 * 10 9 8 31 31 H 1.09003 * 109.49442 * 52.79062 * 10 9 8 32 32 H 1.08999 * 109.63018 * 294.12703 * 11 10 9 33 33 H 1.08994 * 109.63241 * 173.54401 * 11 10 9 34 34 H 0.97001 * 119.99594 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.63071 * 291.47588 * 21 12 11 36 36 H 1.09000 * 109.62965 * 170.89174 * 21 12 11 37 37 H 1.08997 * 109.49536 * 307.21126 * 22 9 8 38 38 H 1.09001 * 109.49419 * 67.29363 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1516 0.0000 4 6 3.4719 1.1971 0.0005 5 6 4.1898 2.5221 -0.0001 6 6 4.1869 0.0135 0.0016 7 9 5.5378 0.0202 0.0026 8 6 3.4758 -1.1903 0.0015 9 7 4.1458 -2.4045 0.0079 10 6 5.0771 -2.4978 -1.1242 11 6 5.9241 -3.7668 -0.9814 12 7 5.0203 -4.9163 -0.8233 13 6 5.1541 -6.0291 -1.6102 14 1 4.2975 -6.6562 -1.8087 15 6 6.3905 -6.3509 -2.1527 16 7 7.4854 -5.8093 -1.6623 17 14 6.5007 -7.5526 -3.5786 18 1 5.1374 -8.0158 -3.9421 19 1 7.1219 -6.8787 -4.7470 20 1 7.3303 -8.7182 -3.1807 21 6 3.9693 -4.8393 0.2028 22 6 3.1993 -3.5279 0.0133 23 7 2.1470 -1.1519 -0.0005 24 1 -0.3635 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 4.3625 2.8422 1.0275 28 1 5.1456 2.4172 -0.5134 29 1 3.5806 3.2652 -0.5147 30 1 4.5137 -2.5395 -2.0563 31 1 5.7292 -1.6243 -1.1317 32 1 6.5656 -3.6822 -0.1043 33 1 6.5352 -3.9015 -1.8738 34 1 8.3495 -6.0345 -2.0413 35 1 4.4229 -4.8577 1.1937 36 1 3.2880 -5.6830 0.0931 37 1 2.4894 -3.4016 0.8307 38 1 2.6620 -3.5554 -0.9347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519076691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:48 Heat of formation + Delta-G solvation = 41.899771 kcal Electronic energy + Delta-G solvation = -22400.651700 eV Core-core repulsion = 19000.945325 eV Total energy + Delta-G solvation = -3399.706375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.88100 -41.09677 -38.43391 -35.15356 -34.11842 -32.34504 -31.02533 -30.06465 -29.28847 -27.92160 -26.51259 -23.60340 -23.13550 -21.95610 -21.82046 -19.40082 -18.34054 -17.37668 -17.15525 -16.31968 -16.03056 -14.86490 -14.80090 -14.55587 -14.29888 -14.04743 -13.59117 -13.53218 -13.42682 -13.24196 -13.09198 -12.74515 -12.60220 -12.37444 -12.15152 -11.58956 -11.42767 -11.22435 -10.84062 -10.79851 -10.52413 -10.48991 -10.22180 -9.87319 -9.80476 -9.35967 -9.18539 -8.58972 -8.11642 -6.79135 -5.86065 -3.27909 0.78151 0.99736 3.33407 3.38559 3.41975 3.44246 3.60233 3.84508 3.96625 4.25177 4.44391 4.69606 4.92711 5.24577 5.29565 5.32115 5.33421 5.41071 5.44570 5.56283 5.61119 5.71789 5.79544 5.88313 5.97361 6.03435 6.11390 6.29823 6.36512 6.48375 6.69182 6.87680 7.09468 7.25614 7.34190 7.51022 7.73273 8.09916 8.33947 9.11830 9.74594 10.32168 11.23429 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004689 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.739408 B = 5970.516117 C = 6576.672864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.334 3.666 3 N -0.530 5.530 4 C 0.164 3.836 5 C -0.104 4.104 6 C -0.039 4.039 7 F -0.115 7.115 8 C 0.351 3.649 9 N -0.458 5.458 10 C 0.029 3.971 11 C 0.179 3.821 12 N -0.596 5.596 13 C -0.254 4.254 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.903 5.903 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.144 3.856 22 C 0.054 3.946 23 N -0.540 5.540 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.099 0.901 34 H 0.255 0.745 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.451 14.198 2.936 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.066 3.934 3 N -0.249 5.249 4 C 0.020 3.980 5 C -0.161 4.161 6 C -0.067 4.067 7 F -0.093 7.093 8 C 0.108 3.892 9 N -0.174 5.174 10 C -0.097 4.097 11 C 0.052 3.948 12 N -0.319 5.319 13 C -0.384 4.384 14 H 0.087 0.913 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.733 3.267 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.216 1.216 21 C 0.017 3.983 22 C -0.074 4.074 23 N -0.263 5.263 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.857 14.002 3.283 17.435 hybrid contribution 0.983 -0.634 -1.132 1.628 sum -8.874 13.368 2.151 16.189 Atomic orbital electron populations 1.20531 0.85416 1.04140 1.03845 1.23085 0.98030 0.82758 0.89542 1.68133 1.07680 1.30170 1.18893 1.21640 0.89768 0.94777 0.91850 1.20720 0.99868 0.91601 1.03919 1.18660 0.79077 0.94555 1.14387 1.91462 1.26891 1.96828 1.94158 1.20664 0.88299 0.91171 0.89075 1.58846 1.17800 0.99512 1.41208 1.23361 0.94667 1.03728 0.87975 1.20923 0.90283 0.81330 1.02232 1.44172 1.34741 1.14978 1.38002 1.19247 0.93388 1.02893 1.22845 0.91315 1.25044 0.95204 0.98902 1.00445 1.70023 0.97098 1.46632 1.41005 0.86205 0.77662 0.80488 0.82317 1.20222 1.21510 1.21613 1.21099 0.91401 0.93142 0.92646 1.22674 0.93133 0.89967 1.01595 1.68379 1.07156 1.30707 1.20016 0.89597 0.89643 0.89532 0.89467 0.89890 0.89531 0.93753 0.89940 0.94925 0.88345 0.93505 0.95439 0.91640 0.90382 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.32 36.01 0.37 -0.42 16 2 C 0.33 4.75 7.64 -157.25 -1.20 3.55 16 3 N -0.53 -7.52 10.27 -7.03 -0.07 -7.59 16 4 C 0.16 2.29 6.82 -82.26 -0.56 1.73 16 5 C -0.10 -1.02 10.06 36.00 0.36 -0.66 16 6 C -0.04 -0.63 6.95 -38.98 -0.27 -0.90 16 7 F -0.11 -1.87 14.24 2.25 0.03 -1.84 16 8 C 0.35 6.21 6.41 -154.62 -0.99 5.22 16 9 N -0.46 -8.84 4.62 -172.64 -0.80 -9.64 16 10 C 0.03 0.58 5.35 -3.70 -0.02 0.56 16 11 C 0.18 4.28 5.42 -3.60 -0.02 4.26 16 12 N -0.60 -14.93 3.04 -172.01 -0.52 -15.45 16 13 C -0.25 -6.90 9.63 -15.06 -0.15 -7.04 16 14 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 15 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 16 N -0.90 -25.84 11.15 55.49 0.62 -25.22 16 17 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.14 3.05 6.69 -3.60 -0.02 3.03 16 22 C 0.05 1.02 4.84 -3.70 -0.02 1.00 16 23 N -0.54 -8.91 8.73 -9.90 -0.09 -8.99 16 24 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.76 7.71 -51.93 -0.40 0.36 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.55 5.61 -51.93 -0.29 1.26 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.58 6.12 -51.93 -0.32 2.26 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.32 7.95 -51.93 -0.41 0.90 16 37 H 0.08 1.36 7.67 -51.93 -0.40 0.96 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -30.31 312.54 -8.92 -39.23 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.17 Total: -1.88 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -2.60 Total: 10.31 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.86 Total: -66.90 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.03 Total: -1.84 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.31 -8.92 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519076691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.132 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds