Wall clock time and date at job start Tue Mar 31 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31744 * 119.05986 * 2 1 4 4 C 1.32580 * 121.02534 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.41347 * 179.97438 * 4 3 2 6 6 C 1.38274 * 119.17043 * 359.97438 * 4 3 2 7 7 F 1.35094 * 120.85235 * 180.02562 * 6 4 3 8 8 C 1.39813 * 118.29297 * 0.02562 * 6 4 3 9 9 N 1.38683 * 120.53965 * 180.25630 * 8 6 4 10 10 C 1.46895 * 110.99839 * 304.01841 * 9 8 6 11 11 C 1.53238 * 109.34281 * 172.74681 * 10 9 8 12 12 N 1.47078 * 108.51898 * 53.83032 * 11 10 9 13 13 C 1.36941 * 120.88315 * 128.84069 * 12 11 10 14 14 H 1.07999 * 119.99954 * 206.56230 * 13 12 11 15 15 C 1.38807 * 119.99628 * 26.55538 * 13 12 11 16 16 N 1.31621 * 120.00099 * 17.03537 * 15 13 12 17 17 Si 1.86805 * 119.99930 * 197.03104 * 15 13 12 18 18 H 1.48502 * 109.47171 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47068 * 120.00500 * 17 15 13 20 20 H 1.48505 * 109.46941 * 240.00372 * 17 15 13 21 21 C 1.47083 * 118.24021 * 308.81616 * 12 11 10 22 22 C 1.46899 * 110.99788 * 179.72035 * 9 8 6 23 23 N 1.31779 * 119.05786 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.47871 * 269.98183 * 1 2 3 25 25 H 1.09004 * 109.46949 * 29.98525 * 1 2 3 26 26 H 1.09001 * 109.47026 * 149.98192 * 1 2 3 27 27 H 1.09004 * 109.47154 * 89.99960 * 5 4 3 28 28 H 1.09001 * 109.47068 * 209.99761 * 5 4 3 29 29 H 1.09000 * 109.47507 * 329.99929 * 5 4 3 30 30 H 1.08997 * 109.49923 * 292.71099 * 10 9 8 31 31 H 1.09003 * 109.49442 * 52.79062 * 10 9 8 32 32 H 1.08999 * 109.63018 * 294.12703 * 11 10 9 33 33 H 1.08994 * 109.63241 * 173.54401 * 11 10 9 34 34 H 0.97001 * 119.99594 * 179.97438 * 16 15 13 35 35 H 1.08998 * 109.63071 * 291.47588 * 21 12 11 36 36 H 1.09000 * 109.62965 * 170.89174 * 21 12 11 37 37 H 1.08997 * 109.49536 * 307.21126 * 22 9 8 38 38 H 1.09001 * 109.49419 * 67.29363 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1516 0.0000 4 6 3.4719 1.1971 0.0005 5 6 4.1898 2.5221 -0.0001 6 6 4.1869 0.0135 0.0016 7 9 5.5378 0.0202 0.0026 8 6 3.4758 -1.1903 0.0015 9 7 4.1458 -2.4045 0.0079 10 6 5.0771 -2.4978 -1.1242 11 6 5.9241 -3.7668 -0.9814 12 7 5.0203 -4.9163 -0.8233 13 6 5.1541 -6.0291 -1.6102 14 1 4.2975 -6.6562 -1.8087 15 6 6.3905 -6.3509 -2.1527 16 7 7.4854 -5.8093 -1.6623 17 14 6.5007 -7.5526 -3.5786 18 1 5.1374 -8.0158 -3.9421 19 1 7.1219 -6.8787 -4.7470 20 1 7.3303 -8.7182 -3.1807 21 6 3.9693 -4.8393 0.2028 22 6 3.1993 -3.5279 0.0133 23 7 2.1470 -1.1519 -0.0005 24 1 -0.3635 -0.0003 1.0276 25 1 -0.3633 0.8902 -0.5136 26 1 -0.3633 -0.8898 -0.5141 27 1 4.3625 2.8422 1.0275 28 1 5.1456 2.4172 -0.5134 29 1 3.5806 3.2652 -0.5147 30 1 4.5137 -2.5395 -2.0563 31 1 5.7292 -1.6243 -1.1317 32 1 6.5656 -3.6822 -0.1043 33 1 6.5352 -3.9015 -1.8738 34 1 8.3495 -6.0345 -2.0413 35 1 4.4229 -4.8577 1.1937 36 1 3.2880 -5.6830 0.0931 37 1 2.4894 -3.4016 0.8307 38 1 2.6620 -3.5554 -0.9347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519076691.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:47 Heat of formation + Delta-G solvation = 23.519120 kcal Electronic energy + Delta-G solvation = -22401.448745 eV Core-core repulsion = 19000.945325 eV Total energy + Delta-G solvation = -3400.503419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.11741 -42.30239 -39.97011 -36.82371 -35.26948 -33.93761 -32.64430 -31.81282 -30.17224 -29.16556 -28.15094 -25.36752 -24.70533 -23.34866 -23.01550 -21.13475 -19.59560 -18.99638 -18.53024 -17.80910 -17.35741 -16.74338 -16.20090 -15.78758 -15.71532 -15.46690 -15.34993 -15.12240 -14.75657 -14.58606 -14.20215 -13.96313 -13.46788 -13.29741 -13.19897 -13.15310 -13.09091 -12.70869 -12.58133 -12.48932 -12.23984 -12.14547 -11.80977 -11.73171 -11.65157 -10.69843 -10.55782 -10.38643 -9.50963 -8.80948 -7.93425 -5.38681 -0.37818 -0.22163 1.45842 1.47947 1.58553 2.08052 2.43358 2.48153 2.79704 2.85911 3.01577 3.23327 3.50561 3.55119 3.79840 4.07268 4.11612 4.22676 4.34471 4.36783 4.48960 4.62397 4.64127 4.65464 4.73304 4.74780 4.83288 4.88923 5.00593 5.12103 5.20570 5.30557 5.44049 5.52223 5.61083 5.84393 5.92008 6.30363 6.93062 7.05984 7.73915 8.28892 9.14961 Molecular weight = 280.14amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.004689 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.739408 B = 5970.516117 C = 6576.672864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.329 3.671 3 N -0.529 5.529 4 C 0.174 3.826 5 C -0.103 4.103 6 C -0.058 4.058 7 F -0.120 7.120 8 C 0.332 3.668 9 N -0.472 5.472 10 C 0.049 3.951 11 C 0.189 3.811 12 N -0.613 5.613 13 C -0.267 4.267 14 H 0.072 0.928 15 C -0.047 4.047 16 N -0.935 5.935 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.143 3.857 22 C 0.071 3.929 23 N -0.554 5.554 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.094 0.906 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.252 0.748 35 H 0.020 0.980 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 15.715 2.793 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.062 3.938 3 N -0.247 5.247 4 C 0.029 3.971 5 C -0.159 4.159 6 C -0.086 4.086 7 F -0.099 7.099 8 C 0.090 3.910 9 N -0.188 5.188 10 C -0.078 4.078 11 C 0.063 3.937 12 N -0.337 5.337 13 C -0.396 4.396 14 H 0.090 0.910 15 C -0.243 4.243 16 N -0.581 5.581 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.017 3.983 22 C -0.056 4.056 23 N -0.276 5.276 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.025 0.975 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.742 15.536 3.154 19.728 hybrid contribution 1.464 -0.994 -1.025 2.045 sum -10.278 14.542 2.129 17.935 Atomic orbital electron populations 1.20712 0.82290 1.05308 1.05321 1.23970 0.99827 0.82133 0.87917 1.68312 1.07672 1.29975 1.18722 1.22284 0.89791 0.95621 0.89450 1.20889 0.99991 0.89670 1.05388 1.18852 0.79034 0.94934 1.15731 1.91440 1.27238 1.96848 1.94362 1.20660 0.89156 0.90740 0.90446 1.58783 1.18286 1.00533 1.41189 1.22960 0.94559 1.01909 0.88334 1.20617 0.90413 0.83022 0.99695 1.44422 1.35466 1.14869 1.38937 1.19581 0.93582 1.03365 1.23114 0.91002 1.25806 0.94854 1.00906 1.02724 1.70174 0.97412 1.48237 1.42283 0.85175 0.77860 0.78142 0.79050 1.19046 1.21562 1.21800 1.21209 0.90763 0.95104 0.91245 1.22425 0.92698 0.88705 1.01786 1.68398 1.06567 1.32003 1.20654 0.87758 0.87817 0.88985 0.87629 0.89202 0.87773 0.94438 0.88822 0.97484 0.91042 0.93845 0.96196 0.90645 0.88637 0.93820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.32 71.24 0.73 -0.55 16 2 C 0.33 8.57 7.64 138.77 1.06 9.63 16 3 N -0.53 -13.58 10.27 -176.15 -1.81 -15.38 16 4 C 0.17 4.46 6.82 42.45 0.29 4.75 16 5 C -0.10 -1.71 10.06 71.24 0.72 -0.99 16 6 C -0.06 -1.81 6.95 22.66 0.16 -1.66 16 7 F -0.12 -3.85 14.24 44.97 0.64 -3.21 16 8 C 0.33 11.49 6.41 133.18 0.85 12.34 16 9 N -0.47 -18.23 4.62 -700.10 -3.23 -21.46 16 10 C 0.05 2.02 5.35 86.38 0.46 2.48 16 11 C 0.19 9.40 5.42 86.35 0.47 9.87 16 12 N -0.61 -31.42 3.04 -698.12 -2.12 -33.54 16 13 C -0.27 -14.65 9.63 84.03 0.81 -13.84 16 14 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 15 C -0.05 -2.63 4.94 84.86 0.42 -2.21 16 16 N -0.94 -55.03 11.15 21.65 0.24 -54.79 16 17 Si 0.97 44.46 29.59 68.60 2.03 46.49 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 21 C 0.14 6.10 6.69 86.35 0.58 6.68 16 22 C 0.07 2.67 4.84 86.39 0.42 3.09 16 23 N -0.55 -17.43 8.73 -185.23 -1.62 -19.05 16 24 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.09 1.41 7.71 -2.39 -0.02 1.39 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 3.60 5.61 -2.39 -0.01 3.58 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 3.92 6.12 -2.39 -0.01 3.91 16 34 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 3.02 7.95 -2.39 -0.02 3.00 16 37 H 0.10 3.22 7.67 -2.39 -0.02 3.20 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -65.74 312.54 2.17 -63.57 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.07 Total: 7.78 kcal Atomic # 6 Polarization: 22.62 SS G_CDS: 6.97 Total: 29.59 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -8.54 Total: -144.22 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.64 Total: -3.21 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.74 2.17 -63.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519076691.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.094 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds