Wall clock time and date at job start Tue Mar 31 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86793 * 119.99759 * 2 1 4 4 H 1.48501 * 109.47388 * 269.99849 * 3 2 1 5 5 H 1.48501 * 109.47634 * 30.00274 * 3 2 1 6 6 H 1.48506 * 109.47200 * 150.00119 * 3 2 1 7 7 C 1.38952 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99491 * 160.89398 * 7 2 1 9 9 N 1.37095 * 120.00340 * 340.88608 * 7 2 1 10 10 C 1.34783 * 119.99840 * 310.01916 * 9 7 2 11 11 O 1.21287 * 119.99828 * 174.21861 * 10 9 7 12 12 C 1.50698 * 119.99961 * 354.21234 * 10 9 7 13 13 N 1.46500 * 109.46924 * 185.74908 * 12 10 9 14 14 C 1.34773 * 120.00086 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00367 * 179.97438 * 14 13 12 17 17 C 1.53000 * 117.50239 * 248.62635 * 16 14 13 18 18 C 1.52994 * 60.00050 * 252.50824 * 17 16 14 19 19 C 1.46496 * 120.00231 * 130.01582 * 9 7 2 20 20 C 1.54268 * 110.03131 * 302.09536 * 19 9 7 21 21 C 1.54961 * 104.16344 * 95.75350 * 20 19 9 22 22 C 1.54889 * 102.77762 * 37.88499 * 21 20 19 23 23 C 1.53881 * 110.03129 * 59.30749 * 19 9 7 24 24 H 0.96994 * 120.00190 * 5.05236 * 1 2 3 25 25 H 1.09001 * 109.46999 * 305.74520 * 12 10 9 26 26 H 1.08997 * 109.47221 * 65.74540 * 12 10 9 27 27 H 0.97005 * 120.00366 * 0.02562 * 13 12 10 28 28 H 1.09000 * 115.54988 * 34.33127 * 16 14 13 29 29 H 1.09004 * 117.49438 * 359.97438 * 17 16 14 30 30 H 1.08995 * 117.50237 * 145.01770 * 17 16 14 31 31 H 1.09005 * 117.49899 * 252.50910 * 18 17 16 32 32 H 1.09006 * 117.52254 * 107.47603 * 18 17 16 33 33 H 1.08998 * 110.01866 * 180.70093 * 19 9 7 34 34 H 1.09001 * 110.48730 * 214.40416 * 20 19 9 35 35 H 1.09002 * 110.48541 * 337.04165 * 20 19 9 36 36 H 1.09004 * 110.71491 * 279.57472 * 21 20 19 37 37 H 1.08991 * 110.92671 * 156.29923 * 21 20 19 38 38 H 1.08999 * 110.49022 * 203.41077 * 22 21 20 39 39 H 1.09001 * 110.59784 * 80.81783 * 22 21 20 40 40 H 1.08995 * 110.02914 * 359.95625 * 23 19 9 41 41 H 1.09002 * 110.02959 * 121.38474 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0442 -1.2290 -0.3067 9 7 1.3800 -2.3581 0.3877 10 6 0.6923 -2.3942 1.5463 11 8 0.0498 -3.3801 1.8397 12 6 0.7219 -1.2095 2.4773 13 7 0.0169 -1.5449 3.7169 14 6 -0.0841 -0.6317 4.7029 15 8 0.4083 0.4679 4.5639 16 6 -0.8098 -0.9764 5.9779 17 6 -2.1361 -0.2640 6.2507 18 6 -0.8902 0.1031 7.0591 19 6 1.4555 -3.5528 -0.4567 20 6 0.8976 -3.2432 -1.8613 21 6 2.1542 -2.9026 -2.7018 22 6 3.2079 -3.9019 -2.1630 23 6 2.9240 -3.9710 -0.6482 24 1 -0.4850 0.8367 -0.0740 25 1 1.7564 -0.9527 2.7057 26 1 0.2336 -0.3600 1.9999 27 1 -0.3767 -2.4245 3.8284 28 1 -0.7175 -2.0117 6.3062 29 1 -2.4835 0.4544 5.5081 30 1 -2.9166 -0.8306 6.7584 31 1 -0.8510 -0.2220 8.0988 32 1 -0.4177 1.0625 6.8485 33 1 0.8915 -4.3673 -0.0021 34 1 0.3900 -4.1164 -2.2712 35 1 0.2204 -2.3900 -1.8232 36 1 2.4701 -1.8747 -2.5237 37 1 1.9700 -3.0702 -3.7628 38 1 4.2157 -3.5289 -2.3454 39 1 3.0761 -4.8822 -2.6209 40 1 3.5804 -3.2846 -0.1135 41 1 3.0726 -4.9885 -0.2866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523399272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:35 Heat of formation + Delta-G solvation = -51.720821 kcal Electronic energy + Delta-G solvation = -22821.793847 eV Core-core repulsion = 19509.195332 eV Total energy + Delta-G solvation = -3312.598514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.59318 -38.88937 -36.84587 -35.81756 -34.14672 -33.60558 -31.45441 -28.05274 -27.94537 -26.62018 -24.70336 -23.27871 -22.33159 -20.19558 -19.72730 -19.62682 -19.28005 -17.46586 -16.21625 -15.89578 -15.33531 -15.20438 -14.92878 -14.54900 -14.34382 -14.10253 -13.87454 -13.50129 -13.02954 -12.70449 -12.36485 -12.06792 -11.74068 -11.54359 -11.47291 -11.13091 -10.97317 -10.77319 -10.62326 -10.51736 -10.51242 -10.40982 -10.34420 -10.28310 -9.89436 -9.80765 -9.40436 -9.04926 -8.52712 -8.23648 -7.38703 -6.49773 -4.26524 2.95187 3.11757 3.25789 3.27099 3.63332 3.92608 4.04978 4.13156 4.75328 4.82446 4.89071 5.01586 5.06624 5.33291 5.40387 5.41779 5.57470 5.64366 5.83731 6.04874 6.11656 6.16516 6.20978 6.26404 6.29861 6.31525 6.41183 6.51106 6.53265 6.56858 6.70946 6.94079 7.02830 7.04814 7.09412 7.19198 7.39717 7.88127 8.18037 8.56061 8.78424 8.84218 9.46472 9.88807 10.54862 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.005646 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.479991 B = 4958.267852 C = 5901.826926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.048 3.952 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.334 4.334 8 H 0.086 0.914 9 N -0.439 5.439 10 C 0.506 3.494 11 O -0.616 6.616 12 C 0.103 3.897 13 N -0.707 5.707 14 C 0.535 3.465 15 O -0.552 6.552 16 C -0.189 4.189 17 C -0.155 4.155 18 C -0.151 4.151 19 C 0.133 3.867 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.128 4.128 24 H 0.275 0.725 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.404 0.596 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 -2.929 4.065 5.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.462 4.462 8 H 0.104 0.896 9 N -0.158 5.158 10 C 0.296 3.704 11 O -0.503 6.503 12 C -0.023 4.023 13 N -0.359 5.359 14 C 0.321 3.679 15 O -0.431 6.431 16 C -0.210 4.210 17 C -0.192 4.192 18 C -0.188 4.188 19 C 0.029 3.971 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.166 4.166 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.141 0.859 27 H 0.240 0.760 28 H 0.139 0.861 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.428 -2.523 4.095 4.829 hybrid contribution 0.183 0.418 -0.211 0.503 sum 0.611 -2.105 3.884 4.460 Atomic orbital electron populations 1.69886 1.06194 1.28574 1.44293 1.25576 0.95241 1.00141 0.94971 0.86215 0.80225 0.81760 0.78468 1.20183 1.20258 1.18953 1.19193 0.95664 0.83372 1.47923 0.89598 1.43295 1.47243 1.09904 1.15351 1.20088 0.80927 0.87076 0.82271 1.90462 1.47020 1.35897 1.76893 1.21531 0.98115 0.99322 0.83307 1.45832 1.56445 1.17207 1.16375 1.19507 0.80060 0.84466 0.83891 1.90668 1.48780 1.22492 1.81162 1.22192 1.02641 0.99547 0.96665 1.22905 0.90391 1.02734 1.03185 1.22911 1.00913 0.99650 0.95338 1.21569 0.94549 0.89616 0.91399 1.22515 0.97714 1.00869 0.94649 1.22460 0.95413 1.00217 0.97305 1.22281 0.98759 0.98718 0.95871 1.22456 0.97819 1.00226 0.96142 0.91512 0.90253 0.85869 0.75954 0.86098 0.88275 0.88046 0.88271 0.87514 0.90350 0.93218 0.89958 0.90261 0.93330 0.92589 0.92788 0.90930 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.97 11.15 55.50 0.62 -21.35 16 2 C 0.05 1.16 3.67 -17.47 -0.06 1.09 16 3 Si 0.91 19.65 29.60 -169.99 -5.03 14.62 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.33 -7.95 6.34 -14.93 -0.09 -8.04 16 8 H 0.09 2.00 7.19 -52.48 -0.38 1.62 16 9 N -0.44 -10.42 2.33 -106.54 -0.25 -10.67 16 10 C 0.51 12.58 7.04 -10.98 -0.08 12.51 16 11 O -0.62 -15.96 15.05 5.55 0.08 -15.88 16 12 C 0.10 2.43 4.52 -5.19 -0.02 2.41 16 13 N -0.71 -14.59 5.52 -61.47 -0.34 -14.93 16 14 C 0.54 10.48 7.61 -10.99 -0.08 10.39 16 15 O -0.55 -12.73 16.26 5.55 0.09 -12.64 16 16 C -0.19 -2.73 6.19 -91.77 -0.57 -3.29 16 17 C -0.15 -1.92 10.23 -26.73 -0.27 -2.19 16 18 C -0.15 -1.88 10.04 -26.74 -0.27 -2.15 16 19 C 0.13 2.80 3.35 -66.81 -0.22 2.58 16 20 C -0.12 -2.35 6.10 -25.03 -0.15 -2.51 16 21 C -0.12 -2.02 6.56 -24.70 -0.16 -2.18 16 22 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 23 C -0.13 -2.29 6.24 -25.61 -0.16 -2.45 16 24 H 0.27 6.84 8.32 -40.82 -0.34 6.50 16 25 H 0.08 1.90 8.03 -51.93 -0.42 1.49 16 26 H 0.12 3.22 5.07 -51.93 -0.26 2.95 16 27 H 0.40 7.85 7.45 -40.82 -0.30 7.54 16 28 H 0.12 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.11 1.51 7.67 -51.93 -0.40 1.11 16 33 H 0.08 1.75 6.96 -51.93 -0.36 1.39 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.90 7.97 -51.93 -0.41 1.49 16 36 H 0.08 1.52 7.24 -51.93 -0.38 1.14 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.38 6.93 -51.93 -0.36 1.02 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -28.69 332.06 -8.36 -37.04 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -6.21 Total: 14.67 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.32 Total: 4.14 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.03 Total: -46.95 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: 0.17 Total: -28.52 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.69 -8.36 -37.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523399272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.679 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds