Wall clock time and date at job start Tue Mar 31 2020 02:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86793 * 119.99759 * 2 1 4 4 H 1.48501 * 109.47388 * 269.99849 * 3 2 1 5 5 H 1.48501 * 109.47634 * 30.00274 * 3 2 1 6 6 H 1.48506 * 109.47200 * 150.00119 * 3 2 1 7 7 C 1.38952 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99491 * 160.89398 * 7 2 1 9 9 N 1.37095 * 120.00340 * 340.88608 * 7 2 1 10 10 C 1.34783 * 119.99840 * 310.01916 * 9 7 2 11 11 O 1.21287 * 119.99828 * 174.21861 * 10 9 7 12 12 C 1.50698 * 119.99961 * 354.21234 * 10 9 7 13 13 N 1.46500 * 109.46924 * 185.74908 * 12 10 9 14 14 C 1.34773 * 120.00086 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00367 * 179.97438 * 14 13 12 17 17 C 1.53000 * 117.50239 * 248.62635 * 16 14 13 18 18 C 1.52994 * 60.00050 * 252.50824 * 17 16 14 19 19 C 1.46496 * 120.00231 * 130.01582 * 9 7 2 20 20 C 1.54268 * 110.03131 * 302.09536 * 19 9 7 21 21 C 1.54961 * 104.16344 * 95.75350 * 20 19 9 22 22 C 1.54889 * 102.77762 * 37.88499 * 21 20 19 23 23 C 1.53881 * 110.03129 * 59.30749 * 19 9 7 24 24 H 0.96994 * 120.00190 * 5.05236 * 1 2 3 25 25 H 1.09001 * 109.46999 * 305.74520 * 12 10 9 26 26 H 1.08997 * 109.47221 * 65.74540 * 12 10 9 27 27 H 0.97005 * 120.00366 * 0.02562 * 13 12 10 28 28 H 1.09000 * 115.54988 * 34.33127 * 16 14 13 29 29 H 1.09004 * 117.49438 * 359.97438 * 17 16 14 30 30 H 1.08995 * 117.50237 * 145.01770 * 17 16 14 31 31 H 1.09005 * 117.49899 * 252.50910 * 18 17 16 32 32 H 1.09006 * 117.52254 * 107.47603 * 18 17 16 33 33 H 1.08998 * 110.01866 * 180.70093 * 19 9 7 34 34 H 1.09001 * 110.48730 * 214.40416 * 20 19 9 35 35 H 1.09002 * 110.48541 * 337.04165 * 20 19 9 36 36 H 1.09004 * 110.71491 * 279.57472 * 21 20 19 37 37 H 1.08991 * 110.92671 * 156.29923 * 21 20 19 38 38 H 1.08999 * 110.49022 * 203.41077 * 22 21 20 39 39 H 1.09001 * 110.59784 * 80.81783 * 22 21 20 40 40 H 1.08995 * 110.02914 * 359.95625 * 23 19 9 41 41 H 1.09002 * 110.02959 * 121.38474 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0442 -1.2290 -0.3067 9 7 1.3800 -2.3581 0.3877 10 6 0.6923 -2.3942 1.5463 11 8 0.0498 -3.3801 1.8397 12 6 0.7219 -1.2095 2.4773 13 7 0.0169 -1.5449 3.7169 14 6 -0.0841 -0.6317 4.7029 15 8 0.4083 0.4679 4.5639 16 6 -0.8098 -0.9764 5.9779 17 6 -2.1361 -0.2640 6.2507 18 6 -0.8902 0.1031 7.0591 19 6 1.4555 -3.5528 -0.4567 20 6 0.8976 -3.2432 -1.8613 21 6 2.1542 -2.9026 -2.7018 22 6 3.2079 -3.9019 -2.1630 23 6 2.9240 -3.9710 -0.6482 24 1 -0.4850 0.8367 -0.0740 25 1 1.7564 -0.9527 2.7057 26 1 0.2336 -0.3600 1.9999 27 1 -0.3767 -2.4245 3.8284 28 1 -0.7175 -2.0117 6.3062 29 1 -2.4835 0.4544 5.5081 30 1 -2.9166 -0.8306 6.7584 31 1 -0.8510 -0.2220 8.0988 32 1 -0.4177 1.0625 6.8485 33 1 0.8915 -4.3673 -0.0021 34 1 0.3900 -4.1164 -2.2712 35 1 0.2204 -2.3900 -1.8232 36 1 2.4701 -1.8747 -2.5237 37 1 1.9700 -3.0702 -3.7628 38 1 4.2157 -3.5289 -2.3454 39 1 3.0761 -4.8822 -2.6209 40 1 3.5804 -3.2846 -0.1135 41 1 3.0726 -4.9885 -0.2866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523399272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:34 Heat of formation + Delta-G solvation = -69.210854 kcal Electronic energy + Delta-G solvation = -22822.552271 eV Core-core repulsion = 19509.195332 eV Total energy + Delta-G solvation = -3313.356939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27626 -40.54272 -38.48272 -37.07957 -36.00161 -35.33323 -33.31999 -29.74033 -29.42857 -28.30170 -26.52477 -24.69961 -23.30932 -21.85789 -21.28175 -21.14464 -21.03606 -18.96936 -17.92210 -17.65306 -17.11651 -16.77367 -16.56391 -16.17026 -15.84888 -15.70820 -15.41200 -15.11607 -14.63493 -14.26070 -14.08547 -13.56799 -13.48433 -13.35314 -12.99969 -12.66773 -12.45572 -12.43657 -12.30191 -12.09277 -11.85275 -11.76410 -11.54879 -11.52363 -11.46014 -11.21434 -11.04580 -10.87365 -10.43396 -10.05355 -9.27681 -8.41338 -6.20964 1.34823 1.46534 1.48168 1.51985 1.98528 2.07321 2.29707 2.91493 2.93051 3.03012 3.73189 3.85424 3.86887 3.94113 4.00451 4.17624 4.22819 4.36319 4.56796 4.65626 4.72316 4.73532 4.80789 4.87081 4.88610 4.95321 5.00573 5.02884 5.12190 5.18230 5.22791 5.24971 5.36213 5.42039 5.47285 5.55397 5.68881 6.02855 6.56778 6.63748 6.91089 7.21241 7.53773 7.96897 8.63522 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.005646 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.479991 B = 4958.267852 C = 5901.826926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.260 1.260 7 C -0.332 4.332 8 H 0.094 0.906 9 N -0.441 5.441 10 C 0.492 3.508 11 O -0.634 6.634 12 C 0.113 3.887 13 N -0.707 5.707 14 C 0.529 3.471 15 O -0.594 6.594 16 C -0.203 4.203 17 C -0.143 4.143 18 C -0.140 4.140 19 C 0.121 3.879 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.122 4.122 24 H 0.272 0.728 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.410 0.590 28 H 0.151 0.849 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -3.982 4.299 5.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.460 4.460 8 H 0.112 0.888 9 N -0.159 5.159 10 C 0.282 3.718 11 O -0.523 6.523 12 C -0.013 4.013 13 N -0.359 5.359 14 C 0.317 3.683 15 O -0.476 6.476 16 C -0.224 4.224 17 C -0.180 4.180 18 C -0.177 4.177 19 C 0.017 3.983 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.161 4.161 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.248 0.752 28 H 0.169 0.831 29 H 0.098 0.902 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.151 -3.599 4.311 5.733 hybrid contribution -0.074 0.730 -0.287 0.787 sum 1.076 -2.869 4.025 5.059 Atomic orbital electron populations 1.69977 1.07502 1.28839 1.45536 1.26140 0.95571 1.02428 0.94662 0.85438 0.79066 0.78427 0.78890 1.18651 1.21962 1.18361 1.19380 0.95949 0.83521 1.47129 0.88800 1.43500 1.46425 1.10760 1.15259 1.20336 0.81375 0.87180 0.82913 1.90423 1.47952 1.36495 1.77453 1.21191 0.97531 0.98212 0.84406 1.45838 1.56398 1.17860 1.15772 1.20498 0.79326 0.83440 0.85003 1.90637 1.50583 1.24175 1.82206 1.22237 1.03884 1.01765 0.94521 1.23055 0.90564 1.01884 1.02515 1.23036 1.00156 0.97849 0.96675 1.21845 0.96923 0.88047 0.91476 1.22449 0.98297 1.00023 0.94638 1.22398 0.94488 0.99550 0.98436 1.22251 0.98969 0.99580 0.93650 1.22404 0.94783 1.00734 0.98163 0.91871 0.91293 0.88244 0.75210 0.83126 0.90205 0.84342 0.84480 0.89774 0.92051 0.91173 0.94062 0.92447 0.90753 0.90811 0.90168 0.92281 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.07 11.15 21.66 0.24 -46.82 16 2 C 0.02 0.80 3.67 84.93 0.31 1.11 16 3 Si 0.96 40.90 29.60 68.60 2.03 42.93 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.33 -16.04 6.34 84.04 0.53 -15.51 16 8 H 0.09 4.35 7.19 -2.91 -0.02 4.33 16 9 N -0.44 -21.42 2.33 -609.37 -1.42 -22.83 16 10 C 0.49 25.22 7.04 87.66 0.62 25.84 16 11 O -0.63 -33.75 15.05 -3.05 -0.05 -33.80 16 12 C 0.11 5.59 4.52 85.63 0.39 5.97 16 13 N -0.71 -29.96 5.52 -466.80 -2.58 -32.54 16 14 C 0.53 21.04 7.61 87.66 0.67 21.71 16 15 O -0.59 -28.36 16.26 -3.04 -0.05 -28.41 16 16 C -0.20 -5.55 6.19 -11.54 -0.07 -5.62 16 17 C -0.14 -3.23 10.23 30.59 0.31 -2.92 16 18 C -0.14 -3.20 10.04 30.59 0.31 -2.89 16 19 C 0.12 5.09 3.35 45.72 0.15 5.24 16 20 C -0.12 -4.53 6.10 31.69 0.19 -4.33 16 21 C -0.11 -3.63 6.56 31.91 0.21 -3.42 16 22 C -0.11 -2.99 6.83 31.67 0.22 -2.78 16 23 C -0.12 -4.18 6.24 31.32 0.20 -3.98 16 24 H 0.27 14.10 8.32 -92.71 -0.77 13.32 16 25 H 0.07 3.46 8.03 -2.39 -0.02 3.44 16 26 H 0.10 5.45 5.07 -2.39 -0.01 5.44 16 27 H 0.41 16.21 7.45 -92.70 -0.69 15.52 16 28 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.14 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.08 2.34 7.67 -2.38 -0.02 2.32 16 33 H 0.06 2.77 6.96 -2.39 -0.02 2.75 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.04 1.94 7.97 -2.39 -0.02 1.92 16 36 H 0.06 2.13 7.24 -2.38 -0.02 2.11 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.06 2.17 6.93 -2.39 -0.02 2.15 16 41 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -64.97 332.06 2.56 -62.42 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: 0.34 Total: 40.64 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 4.03 Total: 18.42 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.75 Total: -102.20 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -0.10 Total: -62.21 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -64.97 2.56 -62.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523399272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.796 kcal (2) G-P(sol) polarization free energy of solvation -64.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds