Wall clock time and date at job start Tue Mar 31 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99494 * 2 1 4 4 H 1.48498 * 109.47046 * 269.99898 * 3 2 1 5 5 H 1.48500 * 109.47420 * 30.00179 * 3 2 1 6 6 H 1.48506 * 109.47019 * 150.00382 * 3 2 1 7 7 C 1.37870 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47390 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47226 * 180.02562 * 10 9 7 12 12 C 1.33787 * 124.17858 * 90.02424 * 11 10 9 13 13 O 1.21543 * 123.77176 * 359.96079 * 12 11 10 14 14 N 1.34526 * 112.45950 * 179.69372 * 12 11 10 15 15 C 1.47319 * 106.61635 * 0.26762 * 14 12 11 16 16 H 1.08999 * 110.59745 * 241.47039 * 15 14 12 17 17 C 1.53001 * 110.59691 * 118.52710 * 15 14 12 18 18 C 1.53002 * 109.46616 * 181.45423 * 17 15 14 19 19 C 1.53006 * 109.46928 * 180.02562 * 18 17 15 20 20 C 1.52996 * 109.47182 * 59.99381 * 19 18 17 21 21 C 1.52999 * 109.47338 * 300.00544 * 20 19 18 22 22 C 1.52989 * 109.47400 * 59.99854 * 21 20 19 23 23 C 1.34769 * 124.17557 * 270.19903 * 11 10 9 24 24 O 1.21233 * 127.15754 * 359.97438 * 23 11 10 25 25 H 0.96994 * 119.99969 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47048 * 60.00115 * 9 7 2 27 27 H 1.09008 * 109.47311 * 300.00546 * 9 7 2 28 28 H 1.09001 * 109.47281 * 60.00237 * 10 9 7 29 29 H 1.08999 * 109.47355 * 299.99842 * 10 9 7 30 30 H 0.96997 * 126.69377 * 180.23975 * 14 12 11 31 31 H 1.09001 * 109.46948 * 301.44851 * 17 15 14 32 32 H 1.09001 * 109.46995 * 299.99399 * 18 17 15 33 33 H 1.08994 * 109.47719 * 59.99915 * 18 17 15 34 34 H 1.08998 * 109.46941 * 299.99921 * 19 18 17 35 35 H 1.09001 * 109.47074 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47058 * 179.97438 * 20 19 18 37 37 H 1.09009 * 109.47080 * 60.00133 * 20 19 18 38 38 H 1.09001 * 109.46513 * 299.99209 * 21 20 19 39 39 H 1.09004 * 109.46839 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47504 * 179.97438 * 22 21 20 41 41 H 1.09006 * 109.47464 * 59.99831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5130 -4.9307 -0.0012 12 6 1.1381 -5.5816 -1.1083 13 8 1.3664 -5.1860 -2.2346 14 7 0.4851 -6.7257 -0.8356 15 6 0.4198 -6.8339 0.6322 16 1 0.9411 -7.7279 0.9743 17 6 -1.0347 -6.8423 1.1070 18 6 -1.0718 -6.9188 2.6347 19 6 -2.5263 -6.9279 3.1096 20 6 -3.2476 -8.1416 2.5204 21 6 -3.2104 -8.0650 0.9928 22 6 -1.7561 -8.0561 0.5179 23 6 1.1308 -5.5848 1.1135 24 8 1.3213 -5.2473 2.2622 25 1 -0.4850 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8895 29 1 2.8721 -3.6042 -0.8905 30 1 0.1268 -7.3562 -1.4797 31 1 -1.5299 -5.9292 0.7768 32 1 -0.5765 -7.8320 2.9649 33 1 -0.5575 -6.0544 3.0545 34 1 -3.0219 -6.0150 2.7794 35 1 -2.5527 -6.9828 4.1979 36 1 -4.2836 -8.1483 2.8591 37 1 -2.7519 -9.0546 2.8506 38 1 -3.7062 -7.1522 0.6626 39 1 -3.7240 -8.9301 0.5730 40 1 -1.7295 -8.0020 -0.5705 41 1 -1.2603 -8.9690 0.8481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530320570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:15 Heat of formation + Delta-G solvation = -76.456942 kcal Electronic energy + Delta-G solvation = -22671.451937 eV Core-core repulsion = 19357.780784 eV Total energy + Delta-G solvation = -3313.671153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.16426 -38.78512 -38.07025 -35.77219 -35.03830 -32.96775 -31.37071 -30.89829 -29.84498 -26.70271 -25.14540 -22.94072 -22.77797 -21.92241 -21.25491 -19.98291 -19.64132 -17.70040 -16.83300 -16.55032 -16.10029 -15.36966 -15.07275 -14.82208 -14.54735 -14.37761 -14.28425 -14.21036 -13.71879 -13.14799 -12.93676 -12.57869 -12.51936 -12.36524 -12.16475 -11.55098 -11.30539 -11.26483 -10.96057 -10.90494 -10.74278 -10.63468 -10.48859 -10.22445 -10.08368 -10.06311 -9.62184 -9.31812 -9.23519 -8.85856 -8.38227 -6.03122 -4.06880 1.92936 2.61817 3.33186 3.33649 3.38992 3.42432 3.43352 4.12518 4.36871 4.45572 4.50583 4.66534 4.84858 4.98238 5.12264 5.18897 5.32902 5.33615 5.34564 5.38372 5.49958 5.53808 5.71023 5.86819 5.96418 5.98088 6.00159 6.04332 6.10948 6.16332 6.29093 6.32085 6.33712 6.66738 6.93601 7.40246 7.58506 7.72348 7.74553 7.93942 8.28977 8.47942 8.98239 9.57203 11.08619 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.004484 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.872819 B = 6243.236690 C = 6814.253578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.119 3.881 11 N -0.568 5.568 12 C 0.700 3.300 13 O -0.540 6.540 14 N -0.731 5.731 15 C 0.097 3.903 16 H 0.121 0.879 17 C -0.085 4.085 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.111 4.111 23 C 0.523 3.477 24 O -0.466 6.466 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.021 0.979 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.434 0.566 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.833 -19.921 3.706 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.313 5.313 12 C 0.401 3.599 13 O -0.413 6.413 14 N -0.396 5.396 15 C -0.013 4.013 16 H 0.138 0.862 17 C -0.105 4.105 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.148 4.148 23 C 0.309 3.691 24 O -0.336 6.336 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.278 0.722 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.661 -19.274 3.739 20.179 hybrid contribution 0.182 0.673 -0.349 0.780 sum -4.479 -18.601 3.389 19.430 Atomic orbital electron populations 1.69972 1.06150 1.26801 1.50165 1.24989 0.94865 0.99367 0.94950 0.86510 0.79790 0.83048 0.78168 1.20543 1.21172 1.19718 1.20999 0.93095 0.90322 1.51632 0.92236 1.19401 0.94268 0.90802 0.98029 1.22202 0.95627 0.79191 1.02965 1.46715 1.52869 1.24576 1.07106 1.15959 0.78653 0.80588 0.84689 1.91000 1.59718 1.69956 1.20671 1.45563 1.62097 1.24850 1.07109 1.22152 0.98598 0.98915 0.81606 0.86199 1.21353 0.91673 1.00514 0.96922 1.21670 0.97254 1.03626 0.93362 1.21514 0.95440 0.98450 1.00217 1.21556 1.00253 0.98527 0.95390 1.21511 0.96148 1.02047 0.95937 1.21547 0.95903 0.97267 1.00104 1.20696 0.78210 0.84932 0.85290 1.90757 1.53896 1.70972 1.17926 0.92867 0.95824 0.96070 0.89889 0.89736 0.72231 0.89775 0.91652 0.89704 0.91751 0.91760 0.92190 0.92073 0.91736 0.91953 0.91818 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.34 5.30 -27.89 -0.15 0.19 16 10 C 0.12 2.59 5.64 -4.04 -0.02 2.57 16 11 N -0.57 -10.68 2.60 -120.73 -0.31 -10.99 16 12 C 0.70 12.47 8.62 -88.02 -0.76 11.71 16 13 O -0.54 -11.63 17.48 5.33 0.09 -11.54 16 14 N -0.73 -8.96 5.86 -59.19 -0.35 -9.31 16 15 C 0.10 1.12 3.21 -68.20 -0.22 0.90 16 16 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.08 -0.90 1.97 -90.62 -0.18 -1.08 16 18 C -0.12 -1.28 4.96 -26.73 -0.13 -1.41 16 19 C -0.12 -1.13 5.92 -26.73 -0.16 -1.28 16 20 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 21 C -0.12 -0.93 5.92 -26.74 -0.16 -1.09 16 22 C -0.11 -0.87 5.07 -26.74 -0.14 -1.01 16 23 C 0.52 8.67 7.43 -10.56 -0.08 8.59 16 24 O -0.47 -8.75 15.82 5.60 0.09 -8.66 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.08 1.73 8.01 -51.93 -0.42 1.32 16 29 H 0.08 1.82 7.86 -51.93 -0.41 1.41 16 30 H 0.43 4.01 8.25 -40.82 -0.34 3.67 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.13 6.10 -51.93 -0.32 0.82 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.47 7.21 -51.93 -0.37 0.09 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -33.62 331.63 -8.79 -42.41 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.47 Total: -0.66 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -2.56 Total: 3.38 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.07 Total: -46.78 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: 0.18 Total: -20.20 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.62 -8.79 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530320570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.045 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds