Wall clock time and date at job start Tue Mar 31 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99494 * 2 1 4 4 H 1.48498 * 109.47046 * 269.99898 * 3 2 1 5 5 H 1.48500 * 109.47420 * 30.00179 * 3 2 1 6 6 H 1.48506 * 109.47019 * 150.00382 * 3 2 1 7 7 C 1.37870 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47390 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47226 * 180.02562 * 10 9 7 12 12 C 1.33787 * 124.17858 * 90.02424 * 11 10 9 13 13 O 1.21543 * 123.77176 * 359.96079 * 12 11 10 14 14 N 1.34526 * 112.45950 * 179.69372 * 12 11 10 15 15 C 1.47319 * 106.61635 * 0.26762 * 14 12 11 16 16 H 1.08999 * 110.59745 * 241.47039 * 15 14 12 17 17 C 1.53001 * 110.59691 * 118.52710 * 15 14 12 18 18 C 1.53002 * 109.46616 * 181.45423 * 17 15 14 19 19 C 1.53006 * 109.46928 * 180.02562 * 18 17 15 20 20 C 1.52996 * 109.47182 * 59.99381 * 19 18 17 21 21 C 1.52999 * 109.47338 * 300.00544 * 20 19 18 22 22 C 1.52989 * 109.47400 * 59.99854 * 21 20 19 23 23 C 1.34769 * 124.17557 * 270.19903 * 11 10 9 24 24 O 1.21233 * 127.15754 * 359.97438 * 23 11 10 25 25 H 0.96994 * 119.99969 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47048 * 60.00115 * 9 7 2 27 27 H 1.09008 * 109.47311 * 300.00546 * 9 7 2 28 28 H 1.09001 * 109.47281 * 60.00237 * 10 9 7 29 29 H 1.08999 * 109.47355 * 299.99842 * 10 9 7 30 30 H 0.96997 * 126.69377 * 180.23975 * 14 12 11 31 31 H 1.09001 * 109.46948 * 301.44851 * 17 15 14 32 32 H 1.09001 * 109.46995 * 299.99399 * 18 17 15 33 33 H 1.08994 * 109.47719 * 59.99915 * 18 17 15 34 34 H 1.08998 * 109.46941 * 299.99921 * 19 18 17 35 35 H 1.09001 * 109.47074 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47058 * 179.97438 * 20 19 18 37 37 H 1.09009 * 109.47080 * 60.00133 * 20 19 18 38 38 H 1.09001 * 109.46513 * 299.99209 * 21 20 19 39 39 H 1.09004 * 109.46839 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47504 * 179.97438 * 22 21 20 41 41 H 1.09006 * 109.47464 * 59.99831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 7 1.5130 -4.9307 -0.0012 12 6 1.1381 -5.5816 -1.1083 13 8 1.3664 -5.1860 -2.2346 14 7 0.4851 -6.7257 -0.8356 15 6 0.4198 -6.8339 0.6322 16 1 0.9411 -7.7279 0.9743 17 6 -1.0347 -6.8423 1.1070 18 6 -1.0718 -6.9188 2.6347 19 6 -2.5263 -6.9279 3.1096 20 6 -3.2476 -8.1416 2.5204 21 6 -3.2104 -8.0650 0.9928 22 6 -1.7561 -8.0561 0.5179 23 6 1.1308 -5.5848 1.1135 24 8 1.3213 -5.2473 2.2622 25 1 -0.4850 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8895 29 1 2.8721 -3.6042 -0.8905 30 1 0.1268 -7.3562 -1.4797 31 1 -1.5299 -5.9292 0.7768 32 1 -0.5765 -7.8320 2.9649 33 1 -0.5575 -6.0544 3.0545 34 1 -3.0219 -6.0150 2.7794 35 1 -2.5527 -6.9828 4.1979 36 1 -4.2836 -8.1483 2.8591 37 1 -2.7519 -9.0546 2.8506 38 1 -3.7062 -7.1522 0.6626 39 1 -3.7240 -8.9301 0.5730 40 1 -1.7295 -8.0020 -0.5705 41 1 -1.2603 -8.9690 0.8481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530320570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:15 Heat of formation + Delta-G solvation = -98.955395 kcal Electronic energy + Delta-G solvation = -22672.427543 eV Core-core repulsion = 19357.780784 eV Total energy + Delta-G solvation = -3314.646759 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.50446 -39.88518 -39.27266 -37.16138 -36.63772 -34.95700 -32.43659 -31.83387 -31.45138 -27.97423 -26.94173 -24.18775 -23.95763 -23.36622 -22.32546 -21.12792 -20.72369 -19.10588 -18.62881 -17.99258 -17.54659 -16.59355 -16.54177 -16.31080 -16.08448 -15.63859 -15.23041 -15.05401 -14.91841 -14.87657 -14.43891 -14.11599 -13.61680 -13.35611 -13.28624 -13.00069 -12.89626 -12.72870 -12.16888 -12.12884 -12.06202 -12.01404 -11.95795 -11.58545 -11.43666 -11.36091 -11.08377 -10.78702 -10.64457 -10.61202 -10.36997 -8.27155 -6.40628 0.58453 1.23844 1.39705 1.41835 1.53067 1.98041 2.20532 2.38663 2.92816 3.07173 3.47161 3.68284 3.89306 3.95863 4.13362 4.23789 4.39443 4.40793 4.42785 4.47483 4.55770 4.60708 4.65030 4.67422 4.70710 4.83653 5.01405 5.21198 5.23558 5.28855 5.30385 5.32813 5.39389 5.42413 5.48251 5.60433 5.69452 5.81990 6.05477 6.13292 6.40932 6.73602 7.12002 7.29542 8.85853 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.004484 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.872819 B = 6243.236690 C = 6814.253578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.026 3.974 10 C 0.134 3.866 11 N -0.581 5.581 12 C 0.695 3.305 13 O -0.584 6.584 14 N -0.699 5.699 15 C 0.113 3.887 16 H 0.170 0.830 17 C -0.081 4.081 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.105 4.105 23 C 0.512 3.488 24 O -0.492 6.492 25 H 0.265 0.735 26 H -0.013 1.013 27 H -0.011 1.011 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.453 0.547 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 -22.163 3.984 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.584 4.584 8 H 0.090 0.910 9 C -0.012 4.012 10 C 0.013 3.987 11 N -0.326 5.326 12 C 0.396 3.604 13 O -0.461 6.461 14 N -0.365 5.365 15 C 0.005 3.995 16 H 0.187 0.813 17 C -0.101 4.101 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.142 4.142 23 C 0.301 3.699 24 O -0.363 6.363 25 H 0.074 0.926 26 H 0.005 0.995 27 H 0.007 0.993 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.301 0.699 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.231 -21.589 4.028 22.366 hybrid contribution -0.033 1.357 -0.376 1.408 sum -4.264 -20.232 3.652 20.997 Atomic orbital electron populations 1.70120 1.08120 1.28086 1.50974 1.26052 0.95801 1.03758 0.94110 0.85305 0.78692 0.77576 0.78625 1.19632 1.20605 1.18160 1.21477 0.93935 0.91321 1.51683 0.91019 1.19159 0.94389 0.93088 0.94593 1.21715 0.94408 0.79206 1.03357 1.46711 1.53268 1.23968 1.08654 1.16106 0.78973 0.81645 0.83674 1.90967 1.61679 1.71326 1.22099 1.45384 1.60089 1.23008 1.08017 1.22348 0.99063 0.97627 0.80441 0.81279 1.21352 0.90681 1.00821 0.97244 1.21635 0.97761 1.03286 0.93017 1.21522 0.94896 0.98663 1.00694 1.21536 1.00468 0.97990 0.95237 1.21535 0.96196 1.02043 0.96022 1.21567 0.95638 0.96527 1.00490 1.21591 0.77748 0.86150 0.84429 1.90742 1.54750 1.71999 1.18815 0.92586 0.99497 0.99276 0.89066 0.89616 0.69943 0.93151 0.89028 0.93197 0.93987 0.91235 0.91699 0.90259 0.93591 0.89963 0.90941 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.83 13.29 21.45 0.28 -58.55 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 8 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.03 1.45 5.30 29.84 0.16 1.61 16 10 C 0.13 6.04 5.64 86.38 0.49 6.52 16 11 N -0.58 -22.36 2.60 -773.12 -2.01 -24.38 16 12 C 0.70 24.84 8.62 179.44 1.55 26.38 16 13 O -0.58 -25.67 17.48 -3.85 -0.07 -25.74 16 14 N -0.70 -15.80 5.86 -459.59 -2.69 -18.50 16 15 C 0.11 2.37 3.21 44.37 0.14 2.51 16 16 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.08 -1.60 1.97 -10.79 -0.02 -1.62 16 18 C -0.12 -2.37 4.96 30.60 0.15 -2.21 16 19 C -0.12 -2.19 5.92 30.59 0.18 -2.01 16 20 C -0.11 -1.50 5.92 30.59 0.18 -1.32 16 21 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 22 C -0.10 -1.28 5.07 30.59 0.15 -1.12 16 23 C 0.51 17.01 7.43 87.94 0.65 17.67 16 24 O -0.49 -18.86 15.82 -2.88 -0.05 -18.91 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 28 H 0.09 3.92 8.01 -2.39 -0.02 3.90 16 29 H 0.09 3.81 7.86 -2.39 -0.02 3.80 16 30 H 0.45 7.00 8.25 -92.71 -0.77 6.24 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.36 6.10 -2.39 -0.01 1.34 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.07 0.79 7.21 -2.39 -0.02 0.77 16 41 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -77.61 331.63 2.26 -75.35 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.26 Total: 9.81 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 4.51 Total: 13.64 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.42 Total: -101.42 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.11 Total: -44.65 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.61 2.26 -75.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530320570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.609 kcal (2) G-P(sol) polarization free energy of solvation -77.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds