Wall clock time and date at job start Tue Mar 31 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00322 * 2 1 4 4 H 1.48503 * 109.46806 * 274.99146 * 3 2 1 5 5 H 1.48501 * 109.46797 * 34.98748 * 3 2 1 6 6 H 1.48496 * 109.47287 * 154.98893 * 3 2 1 7 7 C 1.37880 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00107 * 188.09778 * 7 2 1 9 9 C 1.50701 * 119.99481 * 8.10106 * 7 2 1 10 10 C 1.53044 * 109.45628 * 185.04869 * 9 7 2 11 11 C 1.53195 * 109.31137 * 178.62578 * 10 9 7 12 12 N 1.46927 * 108.89085 * 54.56242 * 11 10 9 13 13 C 1.34779 * 120.63054 * 126.46258 * 12 11 10 14 14 O 1.21347 * 119.99916 * 351.54142 * 13 12 11 15 15 C 1.49447 * 119.99911 * 171.54023 * 13 12 11 16 16 O 1.21349 * 120.00441 * 354.36600 * 15 13 12 17 17 N 1.34785 * 120.00064 * 174.36956 * 15 13 12 18 18 C 1.46497 * 120.00315 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.47247 * 180.02562 * 18 17 15 20 20 C 1.52996 * 117.49802 * 243.75128 * 19 18 17 21 21 C 1.52991 * 117.50077 * 175.08852 * 19 18 17 22 22 C 1.46959 * 118.71713 * 306.63795 * 12 11 10 23 23 C 1.53036 * 109.45258 * 64.98555 * 9 7 2 24 24 H 0.96999 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.45919 * 305.01473 * 9 7 2 26 26 H 1.08999 * 109.49997 * 58.67287 * 10 9 7 27 27 H 1.08999 * 109.52560 * 298.59011 * 10 9 7 28 28 H 1.08998 * 109.58864 * 174.41688 * 11 10 9 29 29 H 1.09000 * 109.58740 * 294.70695 * 11 10 9 30 30 H 0.97003 * 119.99348 * 359.97438 * 17 15 13 31 31 H 1.09001 * 109.46678 * 300.00216 * 18 17 15 32 32 H 1.08997 * 109.46755 * 59.99702 * 18 17 15 33 33 H 1.09009 * 115.54756 * 29.41212 * 19 18 17 34 34 H 1.09004 * 117.50110 * 359.97438 * 20 19 18 35 35 H 1.08997 * 117.50474 * 145.02335 * 20 19 18 36 36 H 1.08999 * 117.50023 * 214.98140 * 21 19 18 37 37 H 1.09004 * 117.49986 * 0.02562 * 21 19 18 38 38 H 1.09001 * 109.46753 * 293.57408 * 22 12 11 39 39 H 1.08998 * 109.71295 * 173.29018 * 22 12 11 40 40 H 1.09003 * 109.49694 * 301.33152 * 23 9 7 41 41 H 1.09000 * 109.49490 * 61.42695 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5033 2.6199 0.8028 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0764 -1.1986 0.1323 9 6 1.2622 -2.4927 -0.1828 10 6 2.2342 -3.6632 -0.0175 11 6 1.4698 -4.9820 -0.1705 12 7 0.7523 -4.9700 -1.4526 13 6 0.9100 -5.9746 -2.3371 14 8 1.7607 -6.8195 -2.1504 15 6 0.0371 -6.0479 -3.5479 16 8 -0.8794 -5.2642 -3.6837 17 7 0.2677 -6.9846 -4.4893 18 6 -0.5883 -7.0569 -5.6759 19 6 -0.1151 -8.1989 -6.5774 20 6 0.4089 -7.8313 -7.9670 21 6 -0.9533 -8.5135 -7.8180 22 6 -0.1374 -3.8397 -1.7533 23 6 0.6450 -2.5337 -1.5826 24 1 -0.4850 0.8401 0.0004 25 1 0.4725 -2.5682 0.5647 26 1 2.6910 -3.6200 0.9712 27 1 3.0108 -3.6023 -0.7800 28 1 2.1719 -5.8155 -0.1525 29 1 0.7562 -5.0876 0.6467 30 1 1.0005 -7.6109 -4.3809 31 1 -1.6186 -7.2389 -5.3701 32 1 -0.5324 -6.1153 -6.2221 33 1 0.3601 -9.0359 -6.0655 34 1 0.4160 -6.7759 -8.2393 35 1 1.2283 -8.4266 -8.3698 36 1 -1.0295 -9.5573 -8.1226 37 1 -1.8418 -7.9065 -7.9923 38 1 -0.9839 -3.8510 -1.0666 39 1 -0.4979 -3.9183 -2.7789 40 1 -0.0294 -1.6865 -1.7078 41 1 1.4362 -2.4832 -2.3306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530365544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:23 Heat of formation + Delta-G solvation = -40.279528 kcal Electronic energy + Delta-G solvation = -22013.780227 eV Core-core repulsion = 18701.677845 eV Total energy + Delta-G solvation = -3312.102383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66483 -38.73718 -37.68661 -36.97619 -34.47622 -33.34475 -31.21997 -30.12544 -28.06090 -26.36371 -24.14939 -22.75995 -22.45968 -21.99811 -21.32520 -20.09207 -18.88089 -17.30240 -16.91827 -16.46917 -16.07415 -15.80450 -15.28471 -14.68804 -14.49746 -14.27770 -14.16767 -13.75758 -13.24086 -13.04429 -12.84212 -12.65163 -12.31324 -11.89996 -11.79865 -11.72650 -11.42804 -10.97730 -10.87790 -10.83799 -10.63152 -10.55470 -10.37183 -10.14787 -9.71035 -9.29650 -9.28163 -9.08563 -8.60993 -8.32230 -8.10272 -6.02356 -4.04785 1.61538 2.48907 3.30285 3.36286 3.37853 3.40686 3.41853 3.77446 4.26391 4.43869 4.49310 4.53620 4.63744 4.86936 5.26353 5.29616 5.30738 5.42458 5.52549 5.63307 5.74296 5.75865 5.85310 5.90051 6.08189 6.12197 6.21186 6.42509 6.58569 6.68850 6.78953 6.97847 7.11027 7.13170 7.25037 7.66621 7.74812 7.88316 7.94576 8.00013 8.24071 8.42190 8.98792 9.59004 11.06134 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.003561 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.638925 B = 7861.115961 C = 8376.942792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.107 3.893 12 N -0.562 5.562 13 C 0.501 3.499 14 O -0.544 6.544 15 C 0.509 3.491 16 O -0.506 6.506 17 N -0.703 5.703 18 C 0.148 3.852 19 C -0.172 4.172 20 C -0.176 4.176 21 C -0.170 4.170 22 C 0.065 3.935 23 C -0.117 4.117 24 H 0.260 0.740 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.412 0.588 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 -15.580 -11.992 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.160 4.160 11 C -0.015 4.015 12 N -0.293 5.293 13 C 0.283 3.717 14 O -0.424 6.424 15 C 0.291 3.709 16 O -0.382 6.382 17 N -0.357 5.357 18 C 0.025 3.975 19 C -0.190 4.190 20 C -0.213 4.213 21 C -0.207 4.207 22 C -0.055 4.055 23 C -0.155 4.155 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.107 0.893 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.100 -15.304 -11.966 19.540 hybrid contribution 0.775 0.751 0.079 1.082 sum -1.325 -14.553 -11.888 18.838 Atomic orbital electron populations 1.69942 1.05867 1.26528 1.50305 1.24962 0.94795 0.99020 0.95055 0.86657 0.80035 0.83813 0.77968 1.20752 1.21313 1.19946 1.21164 0.93746 0.90830 1.49581 0.92717 1.18692 0.93930 0.91702 0.93080 1.22005 0.98997 0.93959 1.01027 1.21899 0.96032 1.00322 0.83254 1.48190 1.43638 1.20394 1.17068 1.19861 0.84442 0.83093 0.84351 1.90692 1.34455 1.40831 1.76379 1.20396 0.85221 0.81145 0.84169 1.90547 1.31350 1.38730 1.77586 1.45763 1.34527 1.34650 1.20711 1.20989 0.94232 0.97556 0.84707 1.22455 1.05660 1.00627 0.90300 1.23126 0.97514 1.01899 0.98802 1.22973 0.95326 1.01944 1.00478 1.23085 0.92033 0.85497 1.04920 1.21949 0.99165 0.94660 0.99770 0.92997 0.94747 0.91768 0.92904 0.90094 0.91447 0.75155 0.90539 0.90711 0.86944 0.88333 0.88520 0.88392 0.88313 0.91888 0.85900 0.89325 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 12.06 55.43 0.67 -24.43 16 2 C 0.06 1.73 5.21 -17.82 -0.09 1.64 16 3 Si 0.89 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.94 8.49 -34.44 -0.29 -14.23 16 8 H 0.05 1.48 7.76 -52.49 -0.41 1.07 16 9 C 0.04 1.08 1.93 -91.73 -0.18 0.90 16 10 C -0.12 -2.50 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 1.94 6.44 -3.71 -0.02 1.92 16 12 N -0.56 -10.52 2.98 -173.25 -0.52 -11.03 16 13 C 0.50 8.81 7.73 -11.59 -0.09 8.72 16 14 O -0.54 -10.03 15.92 5.50 0.09 -9.95 16 15 C 0.51 7.92 7.76 -11.58 -0.09 7.83 16 16 O -0.51 -8.82 13.16 5.50 0.07 -8.75 16 17 N -0.70 -8.29 5.55 -60.73 -0.34 -8.63 16 18 C 0.15 1.43 5.95 -4.04 -0.02 1.40 16 19 C -0.17 -1.25 5.84 -90.63 -0.53 -1.78 16 20 C -0.18 -1.17 10.18 -26.70 -0.27 -1.44 16 21 C -0.17 -1.04 10.25 -26.70 -0.27 -1.32 16 22 C 0.07 1.29 5.99 -3.69 -0.02 1.27 16 23 C -0.12 -2.69 5.21 -26.61 -0.14 -2.83 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.03 0.91 8.11 -51.93 -0.42 0.49 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.41 7.00 -51.93 -0.36 1.04 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.41 4.34 7.89 -40.82 -0.32 4.02 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 33 H 0.11 0.75 8.04 -51.92 -0.42 0.33 16 34 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.12 2.41 4.29 -54.94 -0.24 2.17 16 40 H 0.09 2.26 6.78 -51.93 -0.35 1.90 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -29.87 334.19 -8.46 -38.34 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.28 Total: 3.83 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.17 Total: -0.56 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.18 Total: -44.09 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.16 Total: -18.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.87 -8.46 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530365544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.944 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds