Wall clock time and date at job start Tue Mar 31 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00322 * 2 1 4 4 H 1.48503 * 109.46806 * 274.99146 * 3 2 1 5 5 H 1.48501 * 109.46797 * 34.98748 * 3 2 1 6 6 H 1.48496 * 109.47287 * 154.98893 * 3 2 1 7 7 C 1.37880 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00107 * 188.09778 * 7 2 1 9 9 C 1.50701 * 119.99481 * 8.10106 * 7 2 1 10 10 C 1.53044 * 109.45628 * 185.04869 * 9 7 2 11 11 C 1.53195 * 109.31137 * 178.62578 * 10 9 7 12 12 N 1.46927 * 108.89085 * 54.56242 * 11 10 9 13 13 C 1.34779 * 120.63054 * 126.46258 * 12 11 10 14 14 O 1.21347 * 119.99916 * 351.54142 * 13 12 11 15 15 C 1.49447 * 119.99911 * 171.54023 * 13 12 11 16 16 O 1.21349 * 120.00441 * 354.36600 * 15 13 12 17 17 N 1.34785 * 120.00064 * 174.36956 * 15 13 12 18 18 C 1.46497 * 120.00315 * 179.97438 * 17 15 13 19 19 C 1.52999 * 109.47247 * 180.02562 * 18 17 15 20 20 C 1.52996 * 117.49802 * 243.75128 * 19 18 17 21 21 C 1.52991 * 117.50077 * 175.08852 * 19 18 17 22 22 C 1.46959 * 118.71713 * 306.63795 * 12 11 10 23 23 C 1.53036 * 109.45258 * 64.98555 * 9 7 2 24 24 H 0.96999 * 119.99737 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.45919 * 305.01473 * 9 7 2 26 26 H 1.08999 * 109.49997 * 58.67287 * 10 9 7 27 27 H 1.08999 * 109.52560 * 298.59011 * 10 9 7 28 28 H 1.08998 * 109.58864 * 174.41688 * 11 10 9 29 29 H 1.09000 * 109.58740 * 294.70695 * 11 10 9 30 30 H 0.97003 * 119.99348 * 359.97438 * 17 15 13 31 31 H 1.09001 * 109.46678 * 300.00216 * 18 17 15 32 32 H 1.08997 * 109.46755 * 59.99702 * 18 17 15 33 33 H 1.09009 * 115.54756 * 29.41212 * 19 18 17 34 34 H 1.09004 * 117.50110 * 359.97438 * 20 19 18 35 35 H 1.08997 * 117.50474 * 145.02335 * 20 19 18 36 36 H 1.08999 * 117.50023 * 214.98140 * 21 19 18 37 37 H 1.09004 * 117.49986 * 0.02562 * 21 19 18 38 38 H 1.09001 * 109.46753 * 293.57408 * 22 12 11 39 39 H 1.08998 * 109.71295 * 173.29018 * 22 12 11 40 40 H 1.09003 * 109.49694 * 301.33152 * 23 9 7 41 41 H 1.09000 * 109.49490 * 61.42695 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5033 2.6199 0.8028 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1941 0.0005 8 1 3.0764 -1.1986 0.1323 9 6 1.2622 -2.4927 -0.1828 10 6 2.2342 -3.6632 -0.0175 11 6 1.4698 -4.9820 -0.1705 12 7 0.7523 -4.9700 -1.4526 13 6 0.9100 -5.9746 -2.3371 14 8 1.7607 -6.8195 -2.1504 15 6 0.0371 -6.0479 -3.5479 16 8 -0.8794 -5.2642 -3.6837 17 7 0.2677 -6.9846 -4.4893 18 6 -0.5883 -7.0569 -5.6759 19 6 -0.1151 -8.1989 -6.5774 20 6 0.4089 -7.8313 -7.9670 21 6 -0.9533 -8.5135 -7.8180 22 6 -0.1374 -3.8397 -1.7533 23 6 0.6450 -2.5337 -1.5826 24 1 -0.4850 0.8401 0.0004 25 1 0.4725 -2.5682 0.5647 26 1 2.6910 -3.6200 0.9712 27 1 3.0108 -3.6023 -0.7800 28 1 2.1719 -5.8155 -0.1525 29 1 0.7562 -5.0876 0.6467 30 1 1.0005 -7.6109 -4.3809 31 1 -1.6186 -7.2389 -5.3701 32 1 -0.5324 -6.1153 -6.2221 33 1 0.3601 -9.0359 -6.0655 34 1 0.4160 -6.7759 -8.2393 35 1 1.2283 -8.4266 -8.3698 36 1 -1.0295 -9.5573 -8.1226 37 1 -1.8418 -7.9065 -7.9923 38 1 -0.9839 -3.8510 -1.0666 39 1 -0.4979 -3.9183 -2.7789 40 1 -0.0294 -1.6865 -1.7078 41 1 1.4362 -2.4832 -2.3306 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530365544.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:23 Heat of formation + Delta-G solvation = -58.850489 kcal Electronic energy + Delta-G solvation = -22014.585525 eV Core-core repulsion = 18701.677845 eV Total energy + Delta-G solvation = -3312.907680 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.00064 -39.98368 -38.60761 -38.41880 -35.71104 -34.99933 -33.04717 -31.81805 -29.12191 -28.05457 -25.68713 -24.17684 -23.53596 -23.20990 -22.10889 -21.48020 -20.37145 -18.70825 -18.34403 -18.12528 -17.32228 -17.01723 -16.54761 -16.37325 -15.72520 -15.51526 -15.17259 -14.88761 -14.67039 -14.61781 -14.53622 -14.14416 -13.91305 -13.35495 -13.22905 -12.80707 -12.55309 -12.43622 -12.35517 -12.34703 -12.18524 -11.99778 -11.53301 -11.38172 -11.19761 -11.07511 -10.92964 -10.45502 -10.30635 -10.07167 -9.69993 -8.11510 -6.20644 0.29492 1.27480 1.40582 1.42716 1.52002 2.07509 2.43045 2.44824 2.88095 3.18322 3.27583 3.65117 3.97800 4.07394 4.10848 4.24352 4.27534 4.30303 4.46179 4.54861 4.59390 4.67544 4.72503 4.82130 4.83248 4.93076 5.05095 5.13440 5.18433 5.19495 5.28091 5.31823 5.36045 5.43206 5.63555 5.94801 5.97834 6.03236 6.26446 6.36880 6.66543 6.89375 6.91159 7.46179 8.96017 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.003561 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.638925 B = 7861.115961 C = 8376.942792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.113 4.113 11 C 0.111 3.889 12 N -0.570 5.570 13 C 0.502 3.498 14 O -0.550 6.550 15 C 0.509 3.491 16 O -0.529 6.529 17 N -0.682 5.682 18 C 0.147 3.853 19 C -0.177 4.177 20 C -0.179 4.179 21 C -0.162 4.162 22 C 0.082 3.918 23 C -0.107 4.107 24 H 0.261 0.739 25 H 0.007 0.993 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.420 0.580 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.059 0.941 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.174 -16.929 -13.041 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.023 3.977 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.302 5.302 13 C 0.285 3.715 14 O -0.429 6.429 15 C 0.291 3.709 16 O -0.407 6.407 17 N -0.335 5.335 18 C 0.024 3.976 19 C -0.196 4.196 20 C -0.216 4.216 21 C -0.199 4.199 22 C -0.039 4.039 23 C -0.146 4.146 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.258 0.742 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.078 0.922 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.536 -16.700 -13.037 21.242 hybrid contribution 0.624 1.109 0.370 1.325 sum -0.912 -15.591 -12.667 20.109 Atomic orbital electron populations 1.70054 1.07094 1.27243 1.50992 1.25685 0.95580 1.02175 0.94834 0.85698 0.78952 0.79947 0.77994 1.20377 1.20968 1.19360 1.21527 0.93795 0.92380 1.49552 0.93116 1.18651 0.93795 0.92365 0.92855 1.21849 0.98137 0.93839 1.01247 1.21854 0.96337 0.99174 0.83637 1.48171 1.43822 1.20567 1.17633 1.20200 0.84323 0.82417 0.84584 1.90684 1.34749 1.40861 1.76617 1.20056 0.84761 0.81887 0.84238 1.90524 1.32245 1.39979 1.77968 1.45754 1.34416 1.33168 1.20193 1.21142 0.93943 0.98490 0.83997 1.22396 1.06781 1.00081 0.90301 1.23197 0.98287 1.01983 0.98129 1.23072 0.95116 1.02751 0.98966 1.22824 0.91412 0.84336 1.05376 1.21733 0.98508 0.95546 0.98783 0.92985 0.97447 0.91016 0.93533 0.88664 0.90363 0.74187 0.90498 0.91165 0.85971 0.88774 0.87549 0.87038 0.88139 0.92223 0.85149 0.92241 0.95024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.69 12.06 21.45 0.26 -52.43 16 2 C 0.02 0.91 5.21 84.66 0.44 1.35 16 3 Si 0.95 43.66 29.55 68.60 2.03 45.68 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -29.32 8.49 25.60 0.22 -29.10 16 8 H 0.05 2.75 7.76 -2.91 -0.02 2.73 16 9 C 0.04 2.07 1.93 -11.51 -0.02 2.05 16 10 C -0.11 -4.60 5.30 30.67 0.16 -4.43 16 11 C 0.11 3.94 6.44 86.36 0.56 4.49 16 12 N -0.57 -20.90 2.98 -820.39 -2.44 -23.34 16 13 C 0.50 16.97 7.73 87.27 0.67 17.64 16 14 O -0.55 -19.20 15.92 -3.24 -0.05 -19.25 16 15 C 0.51 15.20 7.76 87.27 0.68 15.87 16 16 O -0.53 -18.00 13.16 -3.24 -0.04 -18.04 16 17 N -0.68 -14.89 5.55 -464.41 -2.58 -17.47 16 18 C 0.15 2.57 5.95 86.38 0.51 3.09 16 19 C -0.18 -2.17 5.84 -10.80 -0.06 -2.23 16 20 C -0.18 -1.99 10.18 30.62 0.31 -1.68 16 21 C -0.16 -1.60 10.25 30.62 0.31 -1.28 16 22 C 0.08 3.25 5.99 86.36 0.52 3.76 16 23 C -0.11 -5.03 5.21 30.67 0.16 -4.87 16 24 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.01 0.40 8.11 -2.39 -0.02 0.38 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.10 3.12 7.00 -2.39 -0.02 3.11 16 29 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.42 7.92 7.89 -92.71 -0.73 7.19 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.34 7.88 -2.39 -0.02 1.32 16 33 H 0.12 1.29 8.04 -2.38 -0.02 1.27 16 34 H 0.09 1.13 8.03 -2.38 -0.02 1.12 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.13 5.10 4.29 -50.11 -0.22 4.88 16 40 H 0.06 3.13 6.78 -2.39 -0.02 3.11 16 41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -63.41 334.19 1.73 -61.68 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.10 Total: 18.51 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.46 Total: 4.66 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -4.76 Total: -93.24 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.09 Total: -37.29 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -63.41 1.73 -61.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530365544.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.829 kcal (2) G-P(sol) polarization free energy of solvation -63.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds