Wall clock time and date at job start Tue Mar 31 2020 02:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47402 * 269.99986 * 3 2 1 5 5 H 1.48494 * 109.47593 * 30.00432 * 3 2 1 6 6 H 1.48512 * 109.46978 * 150.00556 * 3 2 1 7 7 C 1.37872 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.46060 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31540 * 181.38358 * 10 9 7 12 12 N 1.46925 * 108.77377 * 305.36529 * 11 10 9 13 13 C 1.34779 * 120.62754 * 233.57800 * 12 11 10 14 14 O 1.21278 * 120.00270 * 355.05611 * 13 12 11 15 15 C 1.50702 * 119.99958 * 175.32463 * 13 12 11 16 16 C 1.50704 * 112.84846 * 294.21357 * 15 13 12 17 17 N 1.34778 * 119.99428 * 305.06094 * 16 15 13 18 18 O 1.21277 * 120.00354 * 125.06605 * 16 15 13 19 19 C 1.53777 * 113.61732 * 162.90283 * 15 13 12 20 20 C 1.53783 * 87.08124 * 220.02055 * 19 15 13 21 21 C 1.53776 * 113.61235 * 65.40333 * 15 13 12 22 22 C 1.46924 * 118.74008 * 53.86094 * 12 11 10 23 23 C 1.53043 * 109.45927 * 300.06835 * 9 7 2 24 24 H 0.97001 * 120.00401 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.45022 * 60.03362 * 9 7 2 26 26 H 1.08999 * 109.49854 * 61.42899 * 10 9 7 27 27 H 1.09007 * 109.49866 * 301.33628 * 10 9 7 28 28 H 1.09000 * 109.59124 * 185.57448 * 11 10 9 29 29 H 1.09004 * 109.58536 * 65.14975 * 11 10 9 30 30 H 0.96989 * 120.00545 * 355.00290 * 17 16 15 31 31 H 0.97007 * 119.99512 * 175.00394 * 17 16 15 32 32 H 1.08997 * 113.61106 * 334.56853 * 19 15 13 33 33 H 1.08998 * 113.61580 * 105.47159 * 19 15 13 34 34 H 1.09001 * 113.61031 * 270.88003 * 20 19 15 35 35 H 1.09004 * 113.61416 * 139.97861 * 20 19 15 36 36 H 1.09000 * 113.61641 * 254.52766 * 21 15 13 37 37 H 1.09001 * 113.61359 * 25.43459 * 21 15 13 38 38 H 1.09000 * 109.58969 * 65.92596 * 22 12 11 39 39 H 1.09003 * 109.58768 * 186.35226 * 22 12 11 40 40 H 1.09007 * 109.49811 * 298.56817 * 23 9 7 41 41 H 1.08991 * 109.49944 * 58.66049 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 -0.0354 12 7 0.5224 -5.0088 1.0814 13 6 0.5115 -6.0352 1.9549 14 8 1.2316 -6.9940 1.7731 15 6 -0.3999 -5.9941 3.1544 16 6 -0.0351 -4.9045 4.1295 17 7 1.2148 -4.8384 4.6294 18 8 -0.8662 -4.0873 4.4645 19 6 -0.6132 -7.3671 3.8134 20 6 -2.0859 -6.9634 3.9950 21 6 -1.8944 -6.0228 2.7936 22 6 -0.4240 -3.8941 1.2243 23 6 0.3705 -2.5794 1.2486 24 1 -0.4851 0.8400 0.0004 25 1 0.6246 -2.5565 -0.8907 26 1 2.8557 -3.6192 0.9018 27 1 2.8884 -3.5913 -0.8782 28 1 2.1753 -5.8174 0.0641 29 1 0.9373 -5.0711 -0.9788 30 1 1.8587 -5.5325 4.4189 31 1 1.4704 -4.0965 5.1997 32 1 -0.4712 -8.2054 3.1314 33 1 -0.0747 -7.4887 4.7532 34 1 -2.2832 -6.4413 4.9313 35 1 -2.7878 -7.7757 3.8061 36 1 -2.3904 -5.0592 2.9102 37 1 -2.1027 -6.4936 1.8328 38 1 -1.1153 -3.8914 0.3816 39 1 -0.9800 -4.0039 2.1554 40 1 0.9983 -2.5469 2.1391 41 1 -0.3220 -1.7378 1.2603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542920306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:32 Heat of formation + Delta-G solvation = -60.953317 kcal Electronic energy + Delta-G solvation = -23574.712590 eV Core-core repulsion = 20261.713725 eV Total energy + Delta-G solvation = -3312.998865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.29748 -38.84637 -37.35449 -36.47972 -33.61989 -33.53689 -31.34886 -30.11135 -27.63657 -25.95578 -25.77154 -23.14023 -22.35865 -22.02317 -20.47269 -19.09324 -18.60226 -17.48484 -17.11517 -16.29866 -15.98617 -15.80233 -15.07865 -14.63785 -14.56724 -14.13309 -13.84583 -13.36294 -13.08936 -12.88304 -12.67444 -12.55109 -12.29814 -12.09655 -11.56349 -11.35792 -11.26952 -11.07834 -10.95562 -10.65707 -10.47830 -10.41045 -10.11404 -9.97232 -9.66909 -9.61177 -9.37086 -9.20083 -8.91862 -8.38714 -8.06374 -6.02950 -4.09628 2.49343 2.77382 3.27872 3.32676 3.35270 3.37881 3.48300 4.38371 4.40433 4.43202 4.65412 4.68202 4.86484 5.26199 5.27223 5.55134 5.61050 5.68800 5.76159 5.78320 5.88442 5.93596 5.97078 6.08532 6.10321 6.23771 6.34427 6.40983 6.61751 6.78107 6.82624 6.99452 7.11469 7.28119 7.29981 7.65433 7.82765 7.90714 8.04059 8.24236 8.38428 8.39505 8.93519 9.55607 11.02524 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.005439 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.312299 B = 5146.925287 C = 5551.076574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.122 4.122 11 C 0.110 3.890 12 N -0.589 5.589 13 C 0.528 3.472 14 O -0.552 6.552 15 C -0.137 4.137 16 C 0.555 3.445 17 N -0.847 5.847 18 O -0.526 6.526 19 C -0.101 4.101 20 C -0.141 4.141 21 C -0.111 4.111 22 C 0.089 3.911 23 C -0.117 4.117 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.403 0.597 31 H 0.406 0.594 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 -12.608 6.974 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.160 4.160 11 C -0.012 4.012 12 N -0.320 5.320 13 C 0.315 3.685 14 O -0.432 6.432 15 C -0.144 4.144 16 C 0.338 3.662 17 N -0.410 5.410 18 O -0.401 6.401 19 C -0.139 4.139 20 C -0.178 4.178 21 C -0.149 4.149 22 C -0.033 4.033 23 C -0.156 4.156 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.231 0.769 31 H 0.237 0.763 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.363 -12.507 6.957 14.505 hybrid contribution 0.995 1.109 0.038 1.490 sum -1.368 -11.398 6.995 13.443 Atomic orbital electron populations 1.69834 1.05848 1.26521 1.50633 1.24959 0.94857 0.99055 0.95049 0.86624 0.79870 0.83593 0.78078 1.20705 1.21229 1.20022 1.21168 0.92858 0.90542 1.50586 0.92763 1.18652 0.92628 0.91713 0.94059 1.22006 0.98898 0.94198 1.00929 1.21758 0.91678 0.99739 0.87980 1.48253 1.35408 1.20897 1.27479 1.19824 0.82687 0.82600 0.83428 1.90644 1.43173 1.33188 1.76152 1.22302 0.98702 0.98126 0.95254 1.19352 0.82396 0.84370 0.80120 1.43714 1.13395 1.29957 1.53946 1.90760 1.48870 1.40809 1.59678 1.22795 0.96572 0.93904 1.00669 1.22892 0.96444 0.99436 0.99062 1.22926 0.90804 1.02033 0.99151 1.22444 0.91652 0.87465 1.01748 1.22029 0.99822 0.94541 0.99182 0.92921 0.95481 0.93075 0.92042 0.90342 0.92008 0.76864 0.76300 0.88062 0.90813 0.89565 0.90568 0.88751 0.88969 0.91796 0.90038 0.94512 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.73 11.31 55.43 0.63 -24.11 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -13.69 8.56 -34.44 -0.29 -13.99 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 10 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 11 C 0.11 1.98 6.42 -3.71 -0.02 1.95 16 12 N -0.59 -10.48 2.97 -172.50 -0.51 -10.99 16 13 C 0.53 8.80 6.51 -10.98 -0.07 8.73 16 14 O -0.55 -10.12 15.59 5.56 0.09 -10.03 16 15 C -0.14 -1.93 0.56 -156.00 -0.09 -2.02 16 16 C 0.55 8.37 5.69 -10.98 -0.06 8.31 16 17 N -0.85 -10.42 8.77 31.22 0.27 -10.14 16 18 O -0.53 -9.47 15.85 5.56 0.09 -9.38 16 19 C -0.10 -1.16 6.89 -25.92 -0.18 -1.33 16 20 C -0.14 -1.49 7.80 -25.92 -0.20 -1.70 16 21 C -0.11 -1.42 5.65 -25.92 -0.15 -1.57 16 22 C 0.09 1.67 5.66 -3.49 -0.02 1.65 16 23 C -0.12 -2.67 5.17 -26.38 -0.14 -2.81 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 28 H 0.08 1.36 7.04 -51.93 -0.37 1.00 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.40 4.34 8.75 -40.82 -0.36 3.98 16 31 H 0.41 4.48 8.93 -40.82 -0.36 4.11 16 32 H 0.10 1.17 7.71 -51.93 -0.40 0.77 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.32 6.49 -51.93 -0.34 0.98 16 37 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.47 3.11 -51.93 -0.16 1.31 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -30.42 322.35 -7.31 -37.73 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.06 Total: 8.93 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.65 Total: -2.83 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.39 Total: -45.24 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.17 Total: -19.41 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.42 -7.31 -37.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542920306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.224 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds