Wall clock time and date at job start Tue Mar 31 2020 02:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99647 * 2 1 4 4 H 1.48498 * 109.47402 * 269.99986 * 3 2 1 5 5 H 1.48494 * 109.47593 * 30.00432 * 3 2 1 6 6 H 1.48512 * 109.46978 * 150.00556 * 3 2 1 7 7 C 1.37872 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99711 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.46060 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31540 * 181.38358 * 10 9 7 12 12 N 1.46925 * 108.77377 * 305.36529 * 11 10 9 13 13 C 1.34779 * 120.62754 * 233.57800 * 12 11 10 14 14 O 1.21278 * 120.00270 * 355.05611 * 13 12 11 15 15 C 1.50702 * 119.99958 * 175.32463 * 13 12 11 16 16 C 1.50704 * 112.84846 * 294.21357 * 15 13 12 17 17 N 1.34778 * 119.99428 * 305.06094 * 16 15 13 18 18 O 1.21277 * 120.00354 * 125.06605 * 16 15 13 19 19 C 1.53777 * 113.61732 * 162.90283 * 15 13 12 20 20 C 1.53783 * 87.08124 * 220.02055 * 19 15 13 21 21 C 1.53776 * 113.61235 * 65.40333 * 15 13 12 22 22 C 1.46924 * 118.74008 * 53.86094 * 12 11 10 23 23 C 1.53043 * 109.45927 * 300.06835 * 9 7 2 24 24 H 0.97001 * 120.00401 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.45022 * 60.03362 * 9 7 2 26 26 H 1.08999 * 109.49854 * 61.42899 * 10 9 7 27 27 H 1.09007 * 109.49866 * 301.33628 * 10 9 7 28 28 H 1.09000 * 109.59124 * 185.57448 * 11 10 9 29 29 H 1.09004 * 109.58536 * 65.14975 * 11 10 9 30 30 H 0.96989 * 120.00545 * 355.00290 * 17 16 15 31 31 H 0.97007 * 119.99512 * 175.00394 * 17 16 15 32 32 H 1.08997 * 113.61106 * 334.56853 * 19 15 13 33 33 H 1.08998 * 113.61580 * 105.47159 * 19 15 13 34 34 H 1.09001 * 113.61031 * 270.88003 * 20 19 15 35 35 H 1.09004 * 113.61416 * 139.97861 * 20 19 15 36 36 H 1.09000 * 113.61641 * 254.52766 * 21 15 13 37 37 H 1.09001 * 113.61359 * 25.43459 * 21 15 13 38 38 H 1.09000 * 109.58969 * 65.92596 * 22 12 11 39 39 H 1.09003 * 109.58768 * 186.35226 * 22 12 11 40 40 H 1.09007 * 109.49811 * 298.56817 * 23 9 7 41 41 H 1.08991 * 109.49944 * 58.66049 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9866 -0.0354 12 7 0.5224 -5.0088 1.0814 13 6 0.5115 -6.0352 1.9549 14 8 1.2316 -6.9940 1.7731 15 6 -0.3999 -5.9941 3.1544 16 6 -0.0351 -4.9045 4.1295 17 7 1.2148 -4.8384 4.6294 18 8 -0.8662 -4.0873 4.4645 19 6 -0.6132 -7.3671 3.8134 20 6 -2.0859 -6.9634 3.9950 21 6 -1.8944 -6.0228 2.7936 22 6 -0.4240 -3.8941 1.2243 23 6 0.3705 -2.5794 1.2486 24 1 -0.4851 0.8400 0.0004 25 1 0.6246 -2.5565 -0.8907 26 1 2.8557 -3.6192 0.9018 27 1 2.8884 -3.5913 -0.8782 28 1 2.1753 -5.8174 0.0641 29 1 0.9373 -5.0711 -0.9788 30 1 1.8587 -5.5325 4.4189 31 1 1.4704 -4.0965 5.1997 32 1 -0.4712 -8.2054 3.1314 33 1 -0.0747 -7.4887 4.7532 34 1 -2.2832 -6.4413 4.9313 35 1 -2.7878 -7.7757 3.8061 36 1 -2.3904 -5.0592 2.9102 37 1 -2.1027 -6.4936 1.8328 38 1 -1.1153 -3.8914 0.3816 39 1 -0.9800 -4.0039 2.1554 40 1 0.9983 -2.5469 2.1391 41 1 -0.3220 -1.7378 1.2603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542920306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:31 Heat of formation + Delta-G solvation = -81.688483 kcal Electronic energy + Delta-G solvation = -23575.611734 eV Core-core repulsion = 20261.713725 eV Total energy + Delta-G solvation = -3313.898010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.49293 -40.21367 -38.73818 -37.77605 -35.36794 -34.75406 -33.12146 -31.78753 -28.94074 -27.63332 -26.75668 -24.83288 -23.94409 -23.18301 -21.94049 -20.40655 -19.93865 -18.91892 -18.26474 -18.17324 -17.34909 -17.01404 -16.51920 -16.22765 -15.88366 -15.49671 -15.16337 -14.88931 -14.63623 -14.52503 -14.21779 -13.96742 -13.48636 -13.40789 -13.10413 -12.94646 -12.83097 -12.51401 -12.41708 -12.17495 -12.01888 -11.93514 -11.54488 -11.43564 -11.15662 -11.02221 -10.90520 -10.74970 -10.60865 -10.41106 -9.61753 -8.09100 -6.22919 1.25100 1.39934 1.41737 1.50223 1.50718 1.97500 2.40037 2.42596 3.17656 3.31920 3.36544 3.49062 3.76268 3.82767 4.06974 4.23858 4.29866 4.37984 4.42645 4.54475 4.64316 4.67509 4.79161 4.82630 4.93224 4.97518 4.98979 5.04154 5.15795 5.19141 5.36331 5.40388 5.49281 5.61733 5.75447 5.95168 6.09056 6.23767 6.35706 6.39174 6.87392 7.00286 7.15269 7.45236 8.94383 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024399 B = 0.005439 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.312299 B = 5146.925287 C = 5551.076574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.112 4.112 11 C 0.115 3.885 12 N -0.594 5.594 13 C 0.533 3.467 14 O -0.564 6.564 15 C -0.144 4.144 16 C 0.550 3.450 17 N -0.835 5.835 18 O -0.560 6.560 19 C -0.093 4.093 20 C -0.127 4.127 21 C -0.117 4.117 22 C 0.105 3.895 23 C -0.105 4.105 24 H 0.261 0.739 25 H 0.003 0.997 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.412 0.588 31 H 0.412 0.588 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.022 0.978 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 -14.012 7.475 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.150 4.150 11 C -0.007 4.007 12 N -0.325 5.325 13 C 0.321 3.679 14 O -0.443 6.443 15 C -0.151 4.151 16 C 0.334 3.666 17 N -0.398 5.398 18 O -0.439 6.439 19 C -0.130 4.130 20 C -0.164 4.164 21 C -0.155 4.155 22 C -0.018 4.018 23 C -0.144 4.144 24 H 0.070 0.930 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.242 0.758 31 H 0.244 0.756 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.041 0.959 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.997 -13.939 7.465 15.938 hybrid contribution 0.935 1.542 -0.123 1.808 sum -1.062 -12.397 7.342 14.447 Atomic orbital electron populations 1.69966 1.06989 1.27114 1.51208 1.25676 0.95645 1.02144 0.94880 0.85693 0.78734 0.79837 0.78202 1.20105 1.21099 1.19556 1.21532 0.92943 0.92105 1.50525 0.93159 1.18617 0.93060 0.92320 0.93315 1.21844 0.98177 0.94060 1.00929 1.21692 0.91844 0.98495 0.88642 1.48229 1.35357 1.20950 1.27999 1.20179 0.82462 0.81794 0.83512 1.90639 1.43704 1.33491 1.76515 1.22435 0.98803 0.99662 0.94184 1.19570 0.82705 0.84160 0.80191 1.43659 1.12756 1.30229 1.53167 1.90748 1.49981 1.42050 1.61096 1.22830 0.97151 0.92051 1.01018 1.22827 0.96557 0.99337 0.97715 1.23005 0.89616 1.02083 1.00750 1.22157 0.91222 0.85950 1.02438 1.21754 0.99020 0.95656 0.97963 0.93012 0.97916 0.93707 0.91348 0.89202 0.91045 0.75775 0.75585 0.87713 0.89372 0.89941 0.88014 0.90292 0.88069 0.91532 0.89042 0.95935 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.82 11.31 21.44 0.24 -51.57 16 2 C 0.02 0.84 5.30 84.65 0.45 1.29 16 3 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.53 -28.81 8.56 25.60 0.22 -28.59 16 8 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 9 C 0.05 2.20 2.06 -11.51 -0.02 2.17 16 10 C -0.11 -4.46 5.30 30.67 0.16 -4.30 16 11 C 0.12 3.97 6.42 86.36 0.55 4.52 16 12 N -0.59 -20.45 2.97 -818.06 -2.43 -22.88 16 13 C 0.53 16.78 6.51 87.66 0.57 17.36 16 14 O -0.56 -19.32 15.59 -3.02 -0.05 -19.37 16 15 C -0.14 -3.82 0.56 -53.15 -0.03 -3.85 16 16 C 0.55 16.03 5.69 87.66 0.50 16.53 16 17 N -0.83 -19.47 8.77 -173.53 -1.52 -20.99 16 18 O -0.56 -20.03 15.85 -3.02 -0.05 -20.08 16 19 C -0.09 -1.85 6.89 31.12 0.21 -1.64 16 20 C -0.13 -2.35 7.80 31.12 0.24 -2.11 16 21 C -0.12 -2.78 5.65 31.12 0.18 -2.61 16 22 C 0.10 3.94 5.66 86.51 0.49 4.43 16 23 C -0.11 -4.89 5.17 30.82 0.16 -4.73 16 24 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 28 H 0.09 2.94 7.04 -2.39 -0.02 2.92 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 30 H 0.41 8.14 8.75 -92.72 -0.81 7.33 16 31 H 0.41 8.69 8.93 -92.70 -0.83 7.87 16 32 H 0.10 2.08 7.71 -2.39 -0.02 2.06 16 33 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 2.15 6.49 -2.39 -0.02 2.13 16 37 H 0.10 2.21 8.09 -2.39 -0.02 2.19 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.09 3.30 3.11 -2.39 -0.01 3.30 16 40 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.07 3.80 6.03 -2.39 -0.01 3.79 16 Total: -1.00 -65.02 322.35 1.33 -63.69 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.58 Total: 27.40 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 3.68 Total: -1.51 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -3.71 Total: -95.44 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.10 Total: -39.44 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.02 1.33 -63.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542920306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.002 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds