Wall clock time and date at job start Tue Mar 31 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 119.99921 * 2 1 4 4 H 1.48505 * 109.47464 * 270.00053 * 3 2 1 5 5 H 1.48497 * 109.47261 * 30.00228 * 3 2 1 6 6 H 1.48506 * 109.47211 * 150.00289 * 3 2 1 7 7 C 1.37878 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00169 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47120 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47320 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00399 * 180.02562 * 11 10 9 13 13 O 1.21289 * 119.99386 * 354.94974 * 12 11 10 14 14 C 1.50692 * 120.00141 * 174.94933 * 12 11 10 15 15 C 1.50694 * 112.85193 * 303.83229 * 14 12 11 16 16 O 1.21280 * 120.00171 * 114.15001 * 15 14 12 17 17 N 1.34786 * 119.99906 * 294.15053 * 15 14 12 18 18 C 1.46493 * 120.00129 * 174.97555 * 17 15 14 19 19 C 1.52995 * 117.50305 * 223.62224 * 18 17 15 20 20 C 1.52996 * 60.00126 * 252.50935 * 19 18 17 21 21 C 1.53786 * 113.61541 * 172.63427 * 14 12 11 22 22 C 1.53951 * 87.02099 * 220.04862 * 21 14 12 23 23 C 1.53784 * 113.61292 * 75.02890 * 14 12 11 24 24 H 0.97005 * 120.00506 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47087 * 59.99897 * 9 7 2 26 26 H 1.08996 * 109.47415 * 299.99832 * 9 7 2 27 27 H 1.09005 * 109.46672 * 60.00319 * 10 9 7 28 28 H 1.08996 * 109.47391 * 300.00523 * 10 9 7 29 29 H 0.96999 * 119.99649 * 0.02562 * 11 10 9 30 30 H 0.97001 * 119.99822 * 354.97216 * 17 15 14 31 31 H 1.09003 * 115.55234 * 9.33539 * 18 17 15 32 32 H 1.09006 * 117.49655 * 0.02562 * 19 18 17 33 33 H 1.09001 * 117.50185 * 145.01980 * 19 18 17 34 34 H 1.09001 * 117.50154 * 252.50778 * 20 19 18 35 35 H 1.09007 * 117.49934 * 107.48596 * 20 19 18 36 36 H 1.09000 * 113.61127 * 334.56698 * 21 14 12 37 37 H 1.08997 * 113.61622 * 105.46507 * 21 14 12 38 38 H 1.08995 * 113.54109 * 270.81337 * 22 21 14 39 39 H 1.09004 * 113.74499 * 139.94058 * 22 21 14 40 40 H 1.09006 * 113.61306 * 254.52574 * 23 14 12 41 41 H 1.08996 * 113.61769 * 25.34781 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4866 -2.6365 -0.0022 12 6 6.1605 -3.8037 -0.0028 13 8 5.5576 -4.8520 0.0901 14 6 7.6629 -3.8061 -0.1189 15 6 8.1562 -3.0854 -1.3470 16 8 8.8001 -2.0640 -1.2330 17 7 7.8818 -3.5759 -2.5720 18 6 8.2650 -2.8196 -3.7666 19 6 7.2424 -2.7239 -4.9006 20 6 8.4823 -3.6058 -5.0611 21 6 8.2935 -5.1953 0.0750 22 6 9.4058 -4.4905 0.8727 23 6 8.3813 -3.3837 1.1735 24 1 -0.4851 0.8400 0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8891 29 1 5.9715 -1.7964 -0.0025 30 1 7.4306 -4.4298 -2.6626 31 1 8.9038 -1.9541 -3.5903 32 1 6.2842 -3.2235 -4.7575 33 1 7.2080 -1.7954 -5.4704 34 1 9.2638 -3.2574 -5.7364 35 1 8.3401 -4.6859 -5.0238 36 1 7.6855 -5.8706 0.6769 37 1 8.6413 -5.6503 -0.8525 38 1 10.2399 -4.1573 0.2554 39 1 9.7270 -5.0402 1.7574 40 1 8.8001 -2.3781 1.1316 41 1 7.7968 -3.5615 2.0761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543309862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:14 Heat of formation + Delta-G solvation = -59.176574 kcal Electronic energy + Delta-G solvation = -22227.276523 eV Core-core repulsion = 18914.354703 eV Total energy + Delta-G solvation = -3312.921820 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.33848 -40.24795 -38.69168 -37.68779 -36.64599 -34.84344 -33.94150 -32.19824 -28.86660 -26.85999 -26.37356 -24.02872 -23.30072 -22.77178 -22.19740 -22.07008 -20.33896 -19.21397 -18.94596 -17.73992 -17.33633 -16.98285 -16.50979 -16.26017 -16.05244 -15.77515 -15.51236 -15.19339 -14.91475 -14.66328 -14.50919 -13.78804 -13.48424 -13.42071 -13.22572 -13.05256 -12.56037 -12.48872 -12.41229 -12.25385 -12.23003 -11.97802 -11.81803 -11.55234 -11.52422 -11.47122 -11.08677 -10.82142 -10.75809 -10.15910 -9.85361 -8.33306 -6.40071 1.15095 1.35761 1.37387 1.42154 1.48589 1.88303 2.11880 2.32926 2.92446 3.01729 3.30706 3.38665 3.47974 3.66117 3.74813 3.76478 4.00998 4.02054 4.25166 4.36234 4.38003 4.63623 4.69315 4.72669 4.74311 4.78241 4.92519 4.97089 5.00071 5.02795 5.05773 5.17628 5.31168 5.33699 5.35685 5.39327 5.58545 6.18085 6.26044 6.41770 6.67118 6.94732 7.05772 7.24706 8.83187 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.004774 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.566325 B = 5864.265855 C = 6734.908255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.537 4.537 8 H 0.034 0.966 9 C -0.014 4.014 10 C 0.146 3.854 11 N -0.715 5.715 12 C 0.531 3.469 13 O -0.564 6.564 14 C -0.140 4.140 15 C 0.552 3.448 16 O -0.552 6.552 17 N -0.689 5.689 18 C 0.055 3.945 19 C -0.197 4.197 20 C -0.162 4.162 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.111 4.111 24 H 0.269 0.731 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.407 0.593 30 H 0.411 0.589 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.658 -7.814 -5.609 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.575 4.575 8 H 0.052 0.948 9 C -0.052 4.052 10 C 0.022 3.978 11 N -0.365 5.365 12 C 0.317 3.683 13 O -0.443 6.443 14 C -0.147 4.147 15 C 0.338 3.662 16 O -0.430 6.430 17 N -0.338 5.338 18 C -0.051 4.051 19 C -0.235 4.235 20 C -0.200 4.200 21 C -0.137 4.137 22 C -0.163 4.163 23 C -0.149 4.149 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.242 0.758 30 H 0.247 0.753 31 H 0.147 0.853 32 H 0.110 0.890 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 23.498 -7.711 -5.479 25.330 hybrid contribution -0.806 0.760 -0.096 1.112 sum 22.692 -6.951 -5.575 24.379 Atomic orbital electron populations 1.70050 1.08350 1.28414 1.51835 1.25960 0.95602 1.03447 0.93707 0.85651 0.79594 0.78050 0.79315 1.19082 1.20867 1.16702 1.21196 0.91205 0.93510 1.51580 0.94763 1.19650 0.94791 0.93048 0.97678 1.21095 0.77815 0.98414 1.00458 1.46193 1.07795 1.08930 1.73598 1.20271 0.88881 0.83402 0.75767 1.90689 1.70320 1.32323 1.51013 1.22472 0.91302 1.03429 0.97491 1.19533 0.78711 0.84042 0.83929 1.90688 1.40311 1.25269 1.86704 1.45300 1.59861 1.24166 1.04499 1.21729 1.03336 0.99299 0.80709 1.23488 0.94921 1.03400 1.01716 1.23463 0.99920 0.99196 0.97391 1.22919 0.96566 0.91802 1.02448 1.22848 0.96021 0.96116 1.01346 1.22899 0.97092 1.01660 0.93221 0.92243 0.94919 0.95285 0.93147 0.93089 0.75815 0.75333 0.85332 0.89019 0.87156 0.86059 0.87338 0.88161 0.89188 0.89521 0.88252 0.89508 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.95 43.26 27.47 68.60 1.88 45.15 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 7 C -0.54 -30.70 9.66 25.60 0.25 -30.45 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C -0.01 -0.63 4.16 29.85 0.12 -0.51 16 10 C 0.15 5.96 5.62 86.38 0.49 6.45 16 11 N -0.72 -23.77 5.46 -463.06 -2.53 -26.30 16 12 C 0.53 16.52 6.83 87.65 0.60 17.12 16 13 O -0.56 -20.96 15.98 -3.06 -0.05 -21.01 16 14 C -0.14 -3.30 1.04 -53.15 -0.06 -3.36 16 15 C 0.55 13.60 6.31 87.65 0.55 14.15 16 16 O -0.55 -16.33 15.51 -3.03 -0.05 -16.38 16 17 N -0.69 -14.23 5.56 -442.55 -2.46 -16.69 16 18 C 0.05 1.02 6.44 44.99 0.29 1.31 16 19 C -0.20 -3.29 10.46 30.59 0.32 -2.97 16 20 C -0.16 -2.04 10.45 30.59 0.32 -1.72 16 21 C -0.10 -1.82 6.95 31.18 0.22 -1.60 16 22 C -0.13 -1.97 7.81 31.18 0.24 -1.73 16 23 C -0.11 -2.25 7.09 31.12 0.22 -2.03 16 24 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 25 H 0.03 1.44 7.20 -2.38 -0.02 1.42 16 26 H 0.03 1.27 7.57 -2.39 -0.02 1.25 16 27 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.41 12.37 8.43 -92.71 -0.78 11.58 16 30 H 0.41 7.45 8.83 -92.71 -0.82 6.63 16 31 H 0.13 2.69 7.39 -2.39 -0.02 2.67 16 32 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.10 2.01 7.54 -2.39 -0.02 2.00 16 37 H 0.09 1.35 8.09 -2.39 -0.02 1.33 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 1.88 7.34 -2.38 -0.02 1.86 16 41 H 0.10 1.94 8.09 -2.39 -0.02 1.92 16 Total: -1.00 -71.00 344.91 0.51 -70.49 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.61 Total: 27.65 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 4.03 Total: -4.29 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -4.69 Total: -101.60 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.10 Total: -37.39 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Total: -71.00 0.51 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543309862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.311 kcal (2) G-P(sol) polarization free energy of solvation -70.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds