Wall clock time and date at job start Tue Mar 31 2020 02:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47000 * 269.99961 * 3 2 1 5 5 H 1.48505 * 109.46736 * 29.99633 * 3 2 1 6 6 H 1.48503 * 109.47090 * 149.99387 * 3 2 1 7 7 C 1.37882 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00288 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99598 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46517 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46855 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99502 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00102 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00127 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.72091 * 324.41954 * 14 13 11 16 16 C 1.53431 * 109.70007 * 84.99788 * 14 13 11 17 17 C 1.52948 * 108.82235 * 54.52357 * 16 14 13 18 18 C 1.50094 * 110.46066 * 50.39338 * 17 16 14 19 19 O 1.21282 * 118.33551 * 160.30305 * 18 17 16 20 20 N 1.33684 * 123.32621 * 340.29133 * 18 17 16 21 21 C 1.45786 * 122.84428 * 2.14028 * 20 18 17 22 22 C 1.53489 * 113.66274 * 212.30968 * 21 20 18 23 23 C 1.53832 * 87.00978 * 220.05154 * 22 21 20 24 24 C 1.53521 * 113.59938 * 114.46284 * 21 20 18 25 25 H 0.97000 * 119.99942 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47484 * 60.00372 * 9 7 2 27 27 H 1.08999 * 109.47041 * 299.99958 * 9 7 2 28 28 H 1.08998 * 109.47345 * 59.99791 * 10 9 7 29 29 H 1.08999 * 109.47026 * 299.99471 * 10 9 7 30 30 H 0.97006 * 119.99586 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.60079 * 294.68246 * 16 14 13 32 32 H 1.08997 * 109.59906 * 174.36478 * 16 14 13 33 33 H 1.08998 * 109.30871 * 170.69473 * 17 16 14 34 34 H 1.08997 * 109.30983 * 290.29122 * 17 16 14 35 35 H 0.96994 * 118.57815 * 182.12854 * 20 18 17 36 36 H 1.09001 * 113.62438 * 334.58766 * 22 21 20 37 37 H 1.09003 * 113.62260 * 105.51884 * 22 21 20 38 38 H 1.08991 * 113.61191 * 270.67529 * 23 22 21 39 39 H 1.08998 * 113.68005 * 139.79949 * 23 22 21 40 40 H 1.08994 * 113.62861 * 254.53699 * 24 21 20 41 41 H 1.09008 * 113.62339 * 25.39598 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5287 -2.6364 0.0009 12 8 6.1350 -1.5860 0.0005 13 7 6.2026 -3.8035 0.0014 14 6 7.6676 -3.8035 0.0019 15 1 8.0355 -2.9691 -0.5951 16 6 8.1843 -3.6773 1.4410 17 6 7.5593 -4.7864 2.2887 18 6 7.7319 -6.1187 1.6194 19 8 7.6298 -7.1203 2.2958 20 7 7.9922 -6.2574 0.3155 21 6 8.1793 -5.1212 -0.5786 22 6 7.6986 -5.3804 -2.0130 23 6 8.9478 -4.6161 -2.4840 24 6 9.6005 -5.0161 -1.1496 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1501 -0.8892 29 1 3.6580 -3.1505 0.8908 30 1 5.7175 -4.6436 0.0021 31 1 7.9037 -2.7051 1.8464 32 1 9.2696 -3.7777 1.4500 33 1 8.0422 -4.8088 3.2657 34 1 6.4956 -4.5861 2.4171 35 1 8.0597 -7.1527 -0.0515 36 1 7.7008 -6.4345 -2.2907 37 1 6.7619 -4.8792 -2.2571 38 1 8.7894 -3.5428 -2.5879 39 1 9.4294 -5.0592 -3.3556 40 1 10.1949 -4.2215 -0.6986 41 1 10.1275 -5.9695 -1.1880 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570988033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:15 Heat of formation + Delta-G solvation = -67.938199 kcal Electronic energy + Delta-G solvation = -22575.322530 eV Core-core repulsion = 19262.020777 eV Total energy + Delta-G solvation = -3313.301753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57998 -39.18790 -38.67347 -35.44721 -33.60476 -33.51297 -32.35146 -31.22075 -28.20199 -26.34619 -25.78740 -24.45695 -23.30651 -21.32794 -20.31614 -19.73757 -19.00844 -17.35187 -17.28308 -16.70583 -16.10344 -16.00407 -15.61115 -15.06075 -14.86001 -14.31996 -14.14647 -13.93436 -13.74373 -13.42053 -12.89143 -12.70143 -12.61751 -12.57332 -12.01484 -11.94811 -11.51106 -11.45422 -11.26016 -11.05290 -10.98700 -10.89006 -10.20977 -10.09026 -9.94393 -9.81598 -9.42402 -9.26651 -9.19923 -9.03269 -8.53074 -6.05056 -4.04161 2.39409 2.91944 3.01972 3.19335 3.35590 3.42563 3.52378 4.00583 4.02950 4.21958 4.30924 4.41649 4.48458 4.65192 4.78439 4.84354 5.14043 5.20671 5.25461 5.30321 5.31509 5.48856 5.53212 5.59020 5.62986 5.66781 5.72788 5.79460 5.94337 6.02667 6.03951 6.46467 6.51231 6.63820 7.04794 7.31817 7.39309 7.62022 7.76176 7.96848 8.45479 8.55233 8.97938 9.57705 11.07801 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.004105 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.111386 B = 6819.439988 C = 7209.637989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.123 4.123 11 C 0.514 3.486 12 O -0.536 6.536 13 N -0.736 5.736 14 C 0.160 3.840 15 H 0.109 0.891 16 C -0.136 4.136 17 C -0.135 4.135 18 C 0.521 3.479 19 O -0.557 6.557 20 N -0.705 5.705 21 C 0.134 3.866 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.143 4.143 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.399 0.601 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.501 -11.915 -2.904 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.564 4.564 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.163 4.163 11 C 0.303 3.697 12 O -0.412 6.412 13 N -0.390 5.390 14 C 0.054 3.946 15 H 0.127 0.873 16 C -0.175 4.175 17 C -0.174 4.174 18 C 0.309 3.691 19 O -0.435 6.435 20 N -0.357 5.357 21 C 0.046 3.954 22 C -0.182 4.182 23 C -0.177 4.177 24 C -0.182 4.182 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.233 0.767 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.237 0.763 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.689 -11.312 -2.427 23.704 hybrid contribution 0.132 0.082 -0.224 0.273 sum 20.821 -11.230 -2.651 23.805 Atomic orbital electron populations 1.69912 1.06317 1.26991 1.50960 1.24973 0.94694 0.99220 0.94306 0.86797 0.80600 0.83422 0.78715 1.20254 1.21443 1.18548 1.21108 0.89275 0.94566 1.51454 0.90963 1.19362 0.96440 0.90077 0.97643 1.21689 0.87794 1.03390 1.03418 1.21567 0.91574 0.82615 0.73973 1.90658 1.70719 1.31282 1.48495 1.46202 1.05541 1.09535 1.77679 1.20838 0.81845 0.95298 0.96643 0.87280 1.22063 1.00686 0.99914 0.94825 1.21547 1.04611 0.91140 1.00135 1.20406 0.74907 0.91906 0.81906 1.90762 1.51076 1.39363 1.62344 1.45676 1.72189 1.09440 1.08401 1.21944 0.97309 0.86946 0.89155 1.23345 0.99796 1.01588 0.93436 1.22767 0.96509 1.01168 0.97230 1.23423 0.95505 1.02799 0.96486 0.92695 0.95821 0.96280 0.89591 0.89566 0.76670 0.89340 0.90403 0.88086 0.87836 0.76333 0.89298 0.89798 0.89351 0.90554 0.90394 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.53 -14.78 9.66 -34.44 -0.33 -15.12 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.03 16 10 C -0.12 -2.25 5.64 -27.88 -0.16 -2.40 16 11 C 0.51 8.34 7.80 -10.99 -0.09 8.26 16 12 O -0.54 -10.62 15.66 5.55 0.09 -10.53 16 13 N -0.74 -8.49 3.64 -53.68 -0.20 -8.68 16 14 C 0.16 1.56 1.87 -67.80 -0.13 1.44 16 15 H 0.11 1.18 6.79 -51.93 -0.35 0.83 16 16 C -0.14 -1.30 5.74 -26.53 -0.15 -1.45 16 17 C -0.13 -1.36 5.60 -28.20 -0.16 -1.52 16 18 C 0.52 5.88 7.74 -11.76 -0.09 5.79 16 19 O -0.56 -8.52 17.81 5.56 0.10 -8.42 16 20 N -0.71 -5.97 5.14 -48.10 -0.25 -6.21 16 21 C 0.13 1.01 1.02 -131.77 -0.13 0.88 16 22 C -0.14 -0.97 7.30 -26.04 -0.19 -1.16 16 23 C -0.14 -0.86 7.72 -25.86 -0.20 -1.06 16 24 C -0.14 -0.87 7.40 -26.03 -0.19 -1.07 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 27 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 30 H 0.40 4.03 8.60 -40.82 -0.35 3.67 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.11 7.78 -51.93 -0.40 0.70 16 35 H 0.40 3.02 8.74 -40.82 -0.36 2.66 16 36 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.08 0.68 7.64 -51.93 -0.40 0.28 16 38 H 0.09 0.62 7.64 -51.93 -0.40 0.22 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.47 8.01 -51.93 -0.42 0.05 16 41 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 331.93 15.07 5.00 5.00 Total: -1.00 -34.49 331.93 -7.56 -42.05 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.40 Total: 1.75 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.01 Total: -5.52 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.33 Total: -41.87 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.19 Total: -18.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.49 -7.56 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570988033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.887 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds