Wall clock time and date at job start Tue Mar 31 2020 02:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99960 * 2 1 4 4 H 1.48499 * 109.47000 * 269.99961 * 3 2 1 5 5 H 1.48505 * 109.46736 * 29.99633 * 3 2 1 6 6 H 1.48503 * 109.47090 * 149.99387 * 3 2 1 7 7 C 1.37882 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00288 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99598 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46517 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46855 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99502 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00102 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00127 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.72091 * 324.41954 * 14 13 11 16 16 C 1.53431 * 109.70007 * 84.99788 * 14 13 11 17 17 C 1.52948 * 108.82235 * 54.52357 * 16 14 13 18 18 C 1.50094 * 110.46066 * 50.39338 * 17 16 14 19 19 O 1.21282 * 118.33551 * 160.30305 * 18 17 16 20 20 N 1.33684 * 123.32621 * 340.29133 * 18 17 16 21 21 C 1.45786 * 122.84428 * 2.14028 * 20 18 17 22 22 C 1.53489 * 113.66274 * 212.30968 * 21 20 18 23 23 C 1.53832 * 87.00978 * 220.05154 * 22 21 20 24 24 C 1.53521 * 113.59938 * 114.46284 * 21 20 18 25 25 H 0.97000 * 119.99942 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47484 * 60.00372 * 9 7 2 27 27 H 1.08999 * 109.47041 * 299.99958 * 9 7 2 28 28 H 1.08998 * 109.47345 * 59.99791 * 10 9 7 29 29 H 1.08999 * 109.47026 * 299.99471 * 10 9 7 30 30 H 0.97006 * 119.99586 * 359.97438 * 13 11 10 31 31 H 1.09002 * 109.60079 * 294.68246 * 16 14 13 32 32 H 1.08997 * 109.59906 * 174.36478 * 16 14 13 33 33 H 1.08998 * 109.30871 * 170.69473 * 17 16 14 34 34 H 1.08997 * 109.30983 * 290.29122 * 17 16 14 35 35 H 0.96994 * 118.57815 * 182.12854 * 20 18 17 36 36 H 1.09001 * 113.62438 * 334.58766 * 22 21 20 37 37 H 1.09003 * 113.62260 * 105.51884 * 22 21 20 38 38 H 1.08991 * 113.61191 * 270.67529 * 23 22 21 39 39 H 1.08998 * 113.68005 * 139.79949 * 23 22 21 40 40 H 1.08994 * 113.62861 * 254.53699 * 24 21 20 41 41 H 1.09008 * 113.62339 * 25.39598 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5287 -2.6364 0.0009 12 8 6.1350 -1.5860 0.0005 13 7 6.2026 -3.8035 0.0014 14 6 7.6676 -3.8035 0.0019 15 1 8.0355 -2.9691 -0.5951 16 6 8.1843 -3.6773 1.4410 17 6 7.5593 -4.7864 2.2887 18 6 7.7319 -6.1187 1.6194 19 8 7.6298 -7.1203 2.2958 20 7 7.9922 -6.2574 0.3155 21 6 8.1793 -5.1212 -0.5786 22 6 7.6986 -5.3804 -2.0130 23 6 8.9478 -4.6161 -2.4840 24 6 9.6005 -5.0161 -1.1496 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1501 -0.8892 29 1 3.6580 -3.1505 0.8908 30 1 5.7175 -4.6436 0.0021 31 1 7.9037 -2.7051 1.8464 32 1 9.2696 -3.7777 1.4500 33 1 8.0422 -4.8088 3.2657 34 1 6.4956 -4.5861 2.4171 35 1 8.0597 -7.1527 -0.0515 36 1 7.7008 -6.4345 -2.2907 37 1 6.7619 -4.8792 -2.2571 38 1 8.7894 -3.5428 -2.5879 39 1 9.4294 -5.0592 -3.3556 40 1 10.1949 -4.2215 -0.6986 41 1 10.1275 -5.9695 -1.1880 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570988033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:15 Heat of formation + Delta-G solvation = -92.869931 kcal Electronic energy + Delta-G solvation = -22576.403651 eV Core-core repulsion = 19262.020777 eV Total energy + Delta-G solvation = -3314.382874 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.38064 -40.40309 -39.54454 -36.39180 -35.50775 -34.51388 -33.53308 -32.91738 -29.27585 -27.67373 -26.65687 -25.13190 -24.31562 -22.95812 -21.29193 -20.79838 -19.91215 -19.14655 -18.10791 -17.72849 -17.39653 -16.89161 -16.64570 -16.24578 -16.20267 -15.73494 -15.15439 -14.88573 -14.82728 -14.63884 -14.50013 -14.13193 -13.51222 -13.37686 -13.35751 -12.91605 -12.73511 -12.67986 -12.32561 -12.09002 -12.01430 -11.94822 -11.74897 -11.62325 -11.48633 -11.38819 -10.87834 -10.77029 -10.73355 -10.11298 -10.06622 -8.30249 -6.33491 1.34918 1.37112 1.51337 1.51497 1.68394 2.08724 2.24656 2.36232 3.05841 3.31364 3.39072 3.49649 3.61752 3.83958 3.86989 3.95512 4.08288 4.22624 4.39287 4.43492 4.50170 4.62033 4.77666 4.81241 4.84845 4.88935 4.95647 5.01819 5.07602 5.11150 5.11808 5.34085 5.42055 5.46670 5.48011 5.62676 5.80362 6.24331 6.25081 6.50620 6.73530 7.14253 7.27853 7.32097 8.85615 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.024109 B = 0.004105 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.111386 B = 6819.439988 C = 7209.637989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.007 3.993 10 C -0.120 4.120 11 C 0.523 3.477 12 O -0.573 6.573 13 N -0.715 5.715 14 C 0.156 3.844 15 H 0.104 0.896 16 C -0.130 4.130 17 C -0.133 4.133 18 C 0.522 3.478 19 O -0.601 6.601 20 N -0.691 5.691 21 C 0.134 3.866 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.133 4.133 25 H 0.267 0.733 26 H 0.011 0.989 27 H 0.012 0.988 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.409 0.591 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.408 0.592 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.780 -12.458 -3.683 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.568 4.568 8 H 0.065 0.935 9 C -0.031 4.031 10 C -0.160 4.160 11 C 0.312 3.688 12 O -0.452 6.452 13 N -0.367 5.367 14 C 0.051 3.949 15 H 0.122 0.878 16 C -0.169 4.169 17 C -0.172 4.172 18 C 0.311 3.689 19 O -0.483 6.483 20 N -0.341 5.341 21 C 0.047 3.953 22 C -0.179 4.179 23 C -0.174 4.174 24 C -0.172 4.172 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.245 0.755 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.246 0.754 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 22.992 -11.895 -3.243 26.089 hybrid contribution -0.596 0.167 -0.011 0.619 sum 22.396 -11.728 -3.253 25.490 Atomic orbital electron populations 1.70033 1.07927 1.28094 1.52583 1.25830 0.95463 1.02960 0.94231 0.85803 0.79281 0.79290 0.79181 1.19260 1.20640 1.18243 1.21453 0.91472 0.93578 1.50314 0.93497 1.19207 0.93698 0.93688 0.96530 1.21510 0.89749 0.99933 1.04786 1.21002 0.90616 0.83237 0.73965 1.90649 1.71063 1.32796 1.50705 1.45921 1.06613 1.08485 1.75683 1.20993 0.80159 0.96613 0.97149 0.87777 1.22016 1.01970 0.98764 0.94123 1.21524 1.04292 0.90780 1.00633 1.20526 0.74409 0.91532 0.82473 1.90749 1.53400 1.40646 1.63524 1.45600 1.70719 1.10226 1.07584 1.21990 0.98932 0.85340 0.89078 1.23386 0.99500 1.02676 0.92363 1.22747 0.96153 1.00631 0.97911 1.23417 0.94261 1.03739 0.95824 0.92430 0.97030 0.97004 0.88147 0.88473 0.75510 0.90898 0.88236 0.87429 0.88575 0.75428 0.87556 0.91079 0.90308 0.89113 0.89917 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 2 C 0.01 0.74 5.47 84.66 0.46 1.21 16 3 Si 0.94 45.93 27.47 68.60 1.88 47.81 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 7 C -0.53 -30.16 9.66 25.60 0.25 -29.92 16 8 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 9 C 0.01 0.32 3.33 29.85 0.10 0.42 16 10 C -0.12 -4.29 5.64 29.85 0.17 -4.12 16 11 C 0.52 16.44 7.80 87.66 0.68 17.12 16 12 O -0.57 -22.29 15.66 -3.04 -0.05 -22.34 16 13 N -0.71 -15.35 3.64 -442.14 -1.61 -16.96 16 14 C 0.16 2.75 1.87 45.08 0.08 2.84 16 15 H 0.10 2.07 6.79 -2.39 -0.02 2.05 16 16 C -0.13 -2.25 5.74 30.72 0.18 -2.07 16 17 C -0.13 -2.49 5.60 29.64 0.17 -2.33 16 18 C 0.52 10.96 7.74 87.64 0.68 11.64 16 19 O -0.60 -17.88 17.81 -3.04 -0.05 -17.94 16 20 N -0.69 -10.00 5.14 -425.09 -2.19 -12.19 16 21 C 0.13 1.65 1.02 4.02 0.00 1.66 16 22 C -0.14 -1.51 7.30 31.04 0.23 -1.28 16 23 C -0.14 -1.29 7.72 31.16 0.24 -1.05 16 24 C -0.13 -1.18 7.40 31.05 0.23 -0.95 16 25 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 27 H 0.01 0.57 7.53 -2.39 -0.02 0.55 16 28 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.41 7.45 8.60 -92.70 -0.80 6.65 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.10 1.31 8.06 -2.39 -0.02 1.29 16 33 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.10 1.96 7.78 -2.39 -0.02 1.95 16 35 H 0.41 5.05 8.74 -92.71 -0.81 4.24 16 36 H 0.11 0.81 8.12 -2.39 -0.02 0.79 16 37 H 0.07 0.98 7.64 -2.39 -0.02 0.97 16 38 H 0.08 0.93 7.64 -2.39 -0.02 0.92 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 0.71 8.01 -2.39 -0.02 0.69 16 41 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -75.04 331.93 1.14 -73.90 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -0.62 Total: 13.24 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 3.47 Total: -6.84 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -3.50 Total: -87.84 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -0.10 Total: -40.28 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -75.04 1.14 -73.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570988033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.966 kcal (2) G-P(sol) polarization free energy of solvation -75.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds