Wall clock time and date at job start Tue Mar 31 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35720 * 117.00401 * 2 1 4 4 C 1.38711 * 119.61913 * 180.02562 * 3 2 1 5 5 C 1.38658 * 119.29006 * 180.02562 * 4 3 2 6 6 C 1.38604 * 118.54592 * 0.02562 * 5 4 3 7 7 F 1.35106 * 120.41004 * 179.97438 * 6 5 4 8 8 C 1.39155 * 119.18471 * 359.97438 * 6 5 4 9 9 N 1.39144 * 119.68207 * 179.72219 * 8 6 5 10 10 C 1.46852 * 110.99898 * 304.21303 * 9 8 6 11 11 C 1.53040 * 109.51976 * 174.16054 * 10 9 8 12 12 C 1.53112 * 109.28076 * 59.17994 * 11 10 9 13 13 C 1.50697 * 109.52374 * 182.43776 * 12 11 10 14 14 H 1.07999 * 119.99875 * 119.68260 * 13 12 11 15 15 C 1.37869 * 120.00062 * 299.68410 * 13 12 11 16 16 N 1.31516 * 120.00210 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00131 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47156 * 90.00283 * 17 15 13 19 19 H 1.48504 * 109.47494 * 209.99917 * 17 15 13 20 20 H 1.48496 * 109.47481 * 330.00393 * 17 15 13 21 21 C 1.53123 * 109.16007 * 302.34521 * 12 11 10 22 22 C 1.46846 * 111.00106 * 180.02562 * 9 8 6 23 23 N 1.32329 * 119.61317 * 0.02562 * 3 2 1 24 24 H 1.08998 * 109.47455 * 59.99786 * 1 2 3 25 25 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47153 * 299.99825 * 1 2 3 27 27 H 1.07995 * 120.35747 * 0.04315 * 4 3 2 28 28 H 1.08001 * 120.72835 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46277 * 294.17648 * 10 9 8 30 30 H 1.08994 * 109.46428 * 54.14353 * 10 9 8 31 31 H 1.09004 * 109.50290 * 299.23521 * 11 10 9 32 32 H 1.09010 * 109.49927 * 179.12147 * 11 10 9 33 33 H 1.08997 * 109.52463 * 62.24828 * 12 11 10 34 34 H 0.96998 * 120.00615 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.50340 * 297.70979 * 21 12 11 36 36 H 1.09001 * 109.50087 * 177.59540 * 21 12 11 37 37 H 1.08998 * 109.45853 * 305.85374 * 22 9 8 38 38 H 1.08997 * 109.46156 * 65.82224 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4309 1.2725 -0.0005 5 6 4.0533 2.5115 0.0000 6 6 3.2627 3.6500 0.0016 7 9 3.8297 4.8763 0.0027 8 6 1.8778 3.5143 0.0021 9 7 1.0742 4.6502 0.0096 10 6 1.4007 5.5183 1.1482 11 6 0.6032 6.8203 1.0437 12 6 -0.8934 6.4974 1.0367 13 6 -1.6827 7.7708 0.8738 14 1 -2.3369 7.8955 0.0236 15 6 -1.5696 8.7765 1.8100 16 7 -2.2587 9.8876 1.6681 17 14 -0.4386 8.5604 3.2809 18 1 0.9167 9.0635 2.9413 19 1 -0.9757 9.3253 4.4350 20 1 -0.3576 7.1208 3.6359 21 6 -1.1985 5.5534 -0.1297 22 6 -0.3489 4.2881 0.0094 23 7 1.3171 2.3142 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0186 0.3665 -0.0017 28 1 5.1306 2.5879 0.0000 29 1 1.1452 5.0095 2.0777 30 1 2.4670 5.7437 1.1390 31 1 0.8685 7.3364 0.1209 32 1 0.8340 7.4579 1.8972 33 1 -1.1666 6.0161 1.9758 34 1 -2.1795 10.5950 2.3270 35 1 -0.9617 6.0495 -1.0708 36 1 -2.2550 5.2858 -0.1145 37 1 -0.5534 3.6199 -0.8272 38 1 -0.5958 3.7853 0.9444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573814263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:54 Heat of formation + Delta-G solvation = -28.329145 kcal Electronic energy + Delta-G solvation = -22427.923735 eV Core-core repulsion = 18992.879255 eV Total energy + Delta-G solvation = -3435.044480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.83623 -40.88558 -39.00905 -37.44040 -34.28816 -32.36686 -31.61350 -30.38312 -29.60827 -27.35904 -25.89652 -23.80231 -23.10387 -22.12141 -21.53942 -19.04281 -18.49285 -17.71827 -17.47212 -16.72341 -16.30863 -16.08517 -15.48720 -14.95484 -14.63948 -14.43463 -14.04851 -13.77947 -13.69449 -13.24162 -13.03131 -12.97143 -12.68670 -12.31129 -12.01794 -11.84961 -11.73668 -11.25353 -10.94148 -10.68805 -10.21043 -10.17296 -10.08644 -9.80623 -9.68183 -9.23917 -9.08964 -8.94523 -8.54373 -7.83554 -6.08196 -4.07116 0.92506 0.98337 2.87066 3.24400 3.32459 3.34696 3.39055 3.61564 4.13583 4.28941 4.39047 4.69350 4.88597 5.10280 5.18211 5.20409 5.22944 5.40485 5.46995 5.50871 5.56968 5.67591 5.76985 5.80507 5.97056 6.04058 6.18614 6.26495 6.34083 6.59652 6.66313 6.79322 6.93423 7.03162 7.20754 7.27474 7.53874 7.71339 7.75871 8.51734 8.96276 9.54284 11.05266 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.005099 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.057300 B = 5489.455464 C = 6148.352811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.306 6.306 3 C 0.339 3.661 4 C -0.205 4.205 5 C -0.052 4.052 6 C -0.013 4.013 7 F -0.124 7.124 8 C 0.342 3.658 9 N -0.464 5.464 10 C 0.048 3.952 11 C -0.117 4.117 12 C 0.011 3.989 13 C -0.510 4.510 14 H 0.075 0.925 15 C 0.070 3.930 16 N -0.901 5.901 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.296 1.296 20 H -0.267 1.267 21 C -0.101 4.101 22 C 0.068 3.932 23 N -0.553 5.553 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 -18.515 -2.293 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.213 6.213 3 C 0.159 3.841 4 C -0.227 4.227 5 C -0.078 4.078 6 C -0.038 4.038 7 F -0.103 7.103 8 C 0.108 3.892 9 N -0.180 5.180 10 C -0.077 4.077 11 C -0.154 4.154 12 C -0.008 4.008 13 C -0.548 4.548 14 H 0.093 0.907 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.713 3.287 18 H -0.204 1.204 19 H -0.224 1.224 20 H -0.192 1.192 21 C -0.139 4.139 22 C -0.058 4.058 23 N -0.282 5.282 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.079 0.921 27 H 0.165 0.835 28 H 0.171 0.829 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.980 -18.283 -2.626 20.994 hybrid contribution 1.193 0.057 1.349 1.802 sum 11.173 -18.226 -1.277 21.416 Atomic orbital electron populations 1.22888 0.76948 1.02922 1.02858 1.86236 1.23146 1.24182 1.87738 1.19617 0.89211 0.84137 0.91168 1.20695 0.91642 0.98687 1.11695 1.21250 1.00903 0.90030 0.95590 1.17853 0.90343 0.81433 1.14176 1.91456 1.84559 1.39822 1.94429 1.19724 0.89205 0.88305 0.91997 1.59048 1.06714 1.11162 1.41043 1.22587 1.01976 0.94746 0.88396 1.22091 0.97900 0.93390 1.02043 1.19233 0.91230 0.95982 0.94342 1.21015 1.25412 0.98302 1.10091 0.90723 1.25016 0.95452 0.95064 0.97634 1.69893 1.41637 1.06304 1.36095 0.86909 0.80814 0.78326 0.82602 1.20390 1.22398 1.19227 1.21603 0.97795 0.93735 1.00738 1.22157 0.83811 0.98486 1.01321 1.67320 1.39981 0.97499 1.23431 0.92066 0.88608 0.92118 0.83523 0.82928 0.94045 0.89606 0.90745 0.92565 0.95754 0.92665 0.91634 0.91595 0.90581 0.93659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.59 10.47 -18.86 -0.20 -3.79 16 3 C 0.34 4.39 7.48 -17.16 -0.13 4.26 16 4 C -0.21 -2.20 10.03 -39.25 -0.39 -2.60 16 5 C -0.05 -0.56 10.15 -39.29 -0.40 -0.96 16 6 C -0.01 -0.19 6.97 -39.11 -0.27 -0.46 16 7 F -0.12 -1.89 14.77 2.25 0.03 -1.86 16 8 C 0.34 5.46 6.41 -154.82 -0.99 4.47 16 9 N -0.46 -8.22 4.63 -173.16 -0.80 -9.03 16 10 C 0.05 0.88 5.16 -3.83 -0.02 0.86 16 11 C -0.12 -2.51 4.84 -26.65 -0.13 -2.64 16 12 C 0.01 0.26 1.75 -91.65 -0.16 0.09 16 13 C -0.51 -14.14 9.14 -34.44 -0.31 -14.45 16 14 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 15 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 16 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 17 Si 0.88 21.73 24.37 -169.99 -4.14 17.59 16 18 H -0.28 -6.62 6.89 56.52 0.39 -6.23 16 19 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 21 C -0.10 -1.99 5.32 -26.65 -0.14 -2.14 16 22 C 0.07 1.19 4.65 -3.83 -0.02 1.17 16 23 N -0.55 -8.24 7.53 -12.44 -0.09 -8.33 16 24 H 0.06 0.61 8.10 -51.93 -0.42 0.18 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.49 5.54 -51.93 -0.29 1.20 16 31 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.06 1.27 3.38 -51.92 -0.18 1.09 16 33 H 0.02 0.58 7.19 -51.93 -0.37 0.21 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.23 7.71 -51.93 -0.40 0.83 16 38 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -30.66 305.25 -6.91 -37.57 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.06 Total: -0.98 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.02 Total: -9.08 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.12 Total: -44.05 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.20 Total: -3.79 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.66 -6.91 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573814263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.236 kcal (2) G-P(sol) polarization free energy of solvation -30.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds