Wall clock time and date at job start Tue Mar 31 2020 01:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35720 * 117.00401 * 2 1 4 4 C 1.38711 * 119.61913 * 180.02562 * 3 2 1 5 5 C 1.38658 * 119.29006 * 180.02562 * 4 3 2 6 6 C 1.38604 * 118.54592 * 0.02562 * 5 4 3 7 7 F 1.35106 * 120.41004 * 179.97438 * 6 5 4 8 8 C 1.39155 * 119.18471 * 359.97438 * 6 5 4 9 9 N 1.39144 * 119.68207 * 179.72219 * 8 6 5 10 10 C 1.46852 * 110.99898 * 304.21303 * 9 8 6 11 11 C 1.53040 * 109.51976 * 174.16054 * 10 9 8 12 12 C 1.53112 * 109.28076 * 59.17994 * 11 10 9 13 13 C 1.50697 * 109.52374 * 182.43776 * 12 11 10 14 14 H 1.07999 * 119.99875 * 119.68260 * 13 12 11 15 15 C 1.37869 * 120.00062 * 299.68410 * 13 12 11 16 16 N 1.31516 * 120.00210 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00131 * 359.97438 * 15 13 12 18 18 H 1.48508 * 109.47156 * 90.00283 * 17 15 13 19 19 H 1.48504 * 109.47494 * 209.99917 * 17 15 13 20 20 H 1.48496 * 109.47481 * 330.00393 * 17 15 13 21 21 C 1.53123 * 109.16007 * 302.34521 * 12 11 10 22 22 C 1.46846 * 111.00106 * 180.02562 * 9 8 6 23 23 N 1.32329 * 119.61317 * 0.02562 * 3 2 1 24 24 H 1.08998 * 109.47455 * 59.99786 * 1 2 3 25 25 H 1.08997 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47153 * 299.99825 * 1 2 3 27 27 H 1.07995 * 120.35747 * 0.04315 * 4 3 2 28 28 H 1.08001 * 120.72835 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46277 * 294.17648 * 10 9 8 30 30 H 1.08994 * 109.46428 * 54.14353 * 10 9 8 31 31 H 1.09004 * 109.50290 * 299.23521 * 11 10 9 32 32 H 1.09010 * 109.49927 * 179.12147 * 11 10 9 33 33 H 1.08997 * 109.52463 * 62.24828 * 12 11 10 34 34 H 0.96998 * 120.00615 * 179.97438 * 16 15 13 35 35 H 1.08994 * 109.50340 * 297.70979 * 21 12 11 36 36 H 1.09001 * 109.50087 * 177.59540 * 21 12 11 37 37 H 1.08998 * 109.45853 * 305.85374 * 22 9 8 38 38 H 1.08997 * 109.46156 * 65.82224 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4309 1.2725 -0.0005 5 6 4.0533 2.5115 0.0000 6 6 3.2627 3.6500 0.0016 7 9 3.8297 4.8763 0.0027 8 6 1.8778 3.5143 0.0021 9 7 1.0742 4.6502 0.0096 10 6 1.4007 5.5183 1.1482 11 6 0.6032 6.8203 1.0437 12 6 -0.8934 6.4974 1.0367 13 6 -1.6827 7.7708 0.8738 14 1 -2.3369 7.8955 0.0236 15 6 -1.5696 8.7765 1.8100 16 7 -2.2587 9.8876 1.6681 17 14 -0.4386 8.5604 3.2809 18 1 0.9167 9.0635 2.9413 19 1 -0.9757 9.3253 4.4350 20 1 -0.3576 7.1208 3.6359 21 6 -1.1985 5.5534 -0.1297 22 6 -0.3489 4.2881 0.0094 23 7 1.3171 2.3142 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0186 0.3665 -0.0017 28 1 5.1306 2.5879 0.0000 29 1 1.1452 5.0095 2.0777 30 1 2.4670 5.7437 1.1390 31 1 0.8685 7.3364 0.1209 32 1 0.8340 7.4579 1.8972 33 1 -1.1666 6.0161 1.9758 34 1 -2.1795 10.5950 2.3270 35 1 -0.9617 6.0495 -1.0708 36 1 -2.2550 5.2858 -0.1145 37 1 -0.5534 3.6199 -0.8272 38 1 -0.5958 3.7853 0.9444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573814263.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:24:54 Heat of formation + Delta-G solvation = -49.408442 kcal Electronic energy + Delta-G solvation = -22428.837802 eV Core-core repulsion = 18992.879255 eV Total energy + Delta-G solvation = -3435.958547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.133 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.91799 -41.92564 -40.23633 -38.55060 -35.90232 -33.96406 -33.04974 -31.91142 -30.71981 -28.46056 -27.41226 -25.03376 -24.46588 -23.38224 -23.05170 -20.69646 -19.48106 -18.90510 -18.76052 -18.47893 -17.34637 -17.27803 -16.53633 -16.43820 -15.91227 -15.84494 -15.35720 -15.03485 -14.95744 -14.62686 -14.55934 -14.12497 -14.05189 -13.86841 -13.39538 -13.30917 -12.86848 -12.76037 -12.30373 -12.17824 -12.12558 -11.77229 -11.53883 -11.17207 -11.04928 -10.94592 -10.84483 -10.64037 -10.29274 -8.94307 -8.30582 -6.34245 -0.08941 0.05918 1.28548 1.33421 1.43445 1.99474 2.27184 2.30988 2.56476 3.04168 3.13192 3.24504 3.72351 3.90388 3.97179 4.05629 4.12798 4.27407 4.36375 4.41974 4.43503 4.45703 4.56863 4.62960 4.67416 4.78129 4.82436 4.85750 4.92505 4.98572 5.11331 5.30635 5.42300 5.57901 5.64415 5.72424 5.89205 6.19314 6.30520 6.67268 6.72495 7.31013 8.86499 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.005099 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.057300 B = 5489.455464 C = 6148.352811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.323 3.677 4 C -0.185 4.185 5 C -0.036 4.036 6 C -0.028 4.028 7 F -0.133 7.133 8 C 0.314 3.686 9 N -0.479 5.479 10 C 0.059 3.941 11 C -0.112 4.112 12 C 0.011 3.989 13 C -0.516 4.516 14 H 0.034 0.966 15 C 0.013 3.987 16 N -0.950 5.950 17 Si 0.945 3.055 18 H -0.263 1.263 19 H -0.297 1.297 20 H -0.248 1.248 21 C -0.095 4.095 22 C 0.084 3.916 23 N -0.566 5.566 24 H 0.054 0.946 25 H 0.127 0.873 26 H 0.051 0.949 27 H 0.182 0.818 28 H 0.192 0.808 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.266 0.734 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.519 -21.539 -1.627 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.214 6.214 3 C 0.143 3.857 4 C -0.207 4.207 5 C -0.062 4.062 6 C -0.053 4.053 7 F -0.112 7.112 8 C 0.082 3.918 9 N -0.195 5.195 10 C -0.067 4.067 11 C -0.150 4.150 12 C -0.008 4.008 13 C -0.554 4.554 14 H 0.053 0.947 15 C -0.184 4.184 16 N -0.590 5.590 17 Si 0.771 3.229 18 H -0.189 1.189 19 H -0.225 1.225 20 H -0.172 1.172 21 C -0.133 4.133 22 C -0.042 4.042 23 N -0.296 5.296 24 H 0.072 0.928 25 H 0.145 0.855 26 H 0.070 0.930 27 H 0.200 0.800 28 H 0.209 0.791 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.720 -21.347 -1.977 24.928 hybrid contribution 0.308 0.867 1.045 1.392 sum 13.028 -20.480 -0.932 24.290 Atomic orbital electron populations 1.23048 0.75983 1.04757 1.02043 1.86250 1.24110 1.23482 1.87572 1.20037 0.90293 0.83956 0.91381 1.21161 0.90909 0.99974 1.08624 1.21674 1.02514 0.88641 0.93354 1.18139 0.90097 0.82100 1.14950 1.91426 1.84540 1.40644 1.94601 1.19664 0.89685 0.88011 0.94417 1.59029 1.06681 1.12610 1.41221 1.22385 1.01959 0.93232 0.89095 1.21904 0.96911 0.95142 1.01063 1.19180 0.91878 0.94283 0.95437 1.21321 1.25063 1.00396 1.08612 0.94733 1.25864 0.97109 0.94583 1.00847 1.70045 1.43854 1.07523 1.37617 0.85902 0.79101 0.79314 0.78554 1.18897 1.22476 1.17215 1.21484 0.98663 0.94393 0.98747 1.21919 0.83817 0.96730 1.01744 1.67191 1.40927 0.97743 1.23752 0.92752 0.85520 0.93033 0.80024 0.79123 0.93851 0.88313 0.91976 0.93324 0.95971 0.92547 0.92842 0.91426 0.89446 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.38 113.37 1.18 1.79 16 2 O -0.31 -6.30 10.47 -90.42 -0.95 -7.24 16 3 C 0.32 7.41 7.48 84.73 0.63 8.04 16 4 C -0.19 -3.14 10.03 22.48 0.23 -2.92 16 5 C -0.04 -0.63 10.15 22.46 0.23 -0.41 16 6 C -0.03 -0.73 6.97 22.58 0.16 -0.57 16 7 F -0.13 -3.78 14.77 44.97 0.66 -3.11 16 8 C 0.31 9.49 6.41 133.00 0.85 10.34 16 9 N -0.48 -16.50 4.63 -701.76 -3.25 -19.75 16 10 C 0.06 2.08 5.16 86.33 0.45 2.53 16 11 C -0.11 -4.80 4.84 30.64 0.15 -4.65 16 12 C 0.01 0.52 1.75 -11.46 -0.02 0.50 16 13 C -0.52 -29.67 9.14 25.60 0.23 -29.43 16 14 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 15 C 0.01 0.75 5.45 84.65 0.46 1.22 16 16 N -0.95 -59.95 13.96 21.44 0.30 -59.65 16 17 Si 0.94 45.02 24.37 68.60 1.67 46.69 16 18 H -0.26 -11.89 6.89 99.48 0.69 -11.20 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 21 C -0.09 -3.82 5.32 30.65 0.16 -3.65 16 22 C 0.08 2.87 4.65 86.33 0.40 3.27 16 23 N -0.57 -15.77 7.53 -306.08 -2.31 -18.07 16 24 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 25 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 28 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 3.25 5.54 -2.39 -0.01 3.24 16 31 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.05 2.13 3.38 -2.38 -0.01 2.12 16 33 H 0.02 1.05 7.19 -2.39 -0.02 1.03 16 34 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.09 2.77 7.71 -2.39 -0.02 2.76 16 38 H 0.04 1.53 8.11 -2.39 -0.02 1.51 16 Total: -1.00 -68.59 305.25 2.23 -66.36 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.99 Total: 8.72 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 5.11 Total: -13.95 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -5.26 Total: -97.47 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.95 Total: -7.24 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.66 Total: -3.11 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.67 Total: 46.69 kcal Total: -68.59 2.23 -66.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573814263.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.956 kcal (2) G-P(sol) polarization free energy of solvation -68.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds