Wall clock time and date at job start Tue Mar 31 2020 02:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00253 * 2 1 4 4 H 1.48501 * 109.47336 * 270.00445 * 3 2 1 5 5 H 1.48510 * 109.46859 * 30.00083 * 3 2 1 6 6 H 1.48503 * 109.47258 * 149.99974 * 3 2 1 7 7 C 1.37879 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00360 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.45698 * 175.00551 * 10 9 7 12 12 C 1.53199 * 109.30897 * 181.38350 * 11 10 9 13 13 N 1.46922 * 108.77614 * 305.35857 * 12 11 10 14 14 C 1.34774 * 120.63471 * 233.58732 * 13 12 11 15 15 O 1.21353 * 119.99848 * 353.19722 * 14 13 12 16 16 C 1.49447 * 120.00129 * 173.47407 * 14 13 12 17 17 O 1.21344 * 120.00029 * 353.17582 * 16 14 13 18 18 N 1.34774 * 119.99991 * 173.17706 * 16 14 13 19 19 C 1.46497 * 120.00182 * 179.97438 * 18 16 14 20 20 C 1.52996 * 117.50344 * 223.62546 * 19 18 16 21 21 C 1.52999 * 117.49990 * 154.99889 * 19 18 16 22 22 C 1.46928 * 118.73750 * 53.86510 * 13 12 11 23 23 C 1.53048 * 109.45845 * 295.06816 * 10 9 7 24 24 H 0.96998 * 119.99969 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46765 * 60.00215 * 9 7 2 26 26 H 1.08999 * 109.46926 * 300.00770 * 9 7 2 27 27 H 1.08993 * 109.46280 * 55.02888 * 10 9 7 28 28 H 1.08993 * 109.50476 * 61.43407 * 11 10 9 29 29 H 1.09004 * 109.52239 * 301.34258 * 11 10 9 30 30 H 1.09001 * 109.58397 * 185.57499 * 12 11 10 31 31 H 1.08999 * 109.70351 * 65.21758 * 12 11 10 32 32 H 0.97007 * 120.00162 * 0.02562 * 18 16 14 33 33 H 1.09008 * 115.54641 * 9.33229 * 19 18 16 34 34 H 1.09001 * 117.49573 * 359.97438 * 20 19 18 35 35 H 1.08992 * 117.50366 * 145.01983 * 20 19 18 36 36 H 1.09000 * 117.50151 * 214.97824 * 21 19 18 37 37 H 1.08995 * 117.49695 * 0.02562 * 21 19 18 38 38 H 1.08994 * 109.59023 * 65.92161 * 22 13 12 39 39 H 1.08998 * 109.58734 * 186.35515 * 22 13 12 40 40 H 1.09007 * 109.49787 * 298.57047 * 23 10 9 41 41 H 1.09001 * 109.49736 * 58.62703 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5466 -2.6382 -0.1261 12 6 6.0506 -4.0845 -0.1605 13 7 5.5425 -4.7906 1.0236 14 6 6.3857 -5.4408 1.8498 15 8 7.5577 -5.5525 1.5556 16 6 5.8761 -6.0297 3.1253 17 8 4.7345 -5.8177 3.4779 18 7 6.6844 -6.7962 3.8839 19 6 6.1850 -7.3730 5.1346 20 6 7.1031 -7.3120 6.3569 21 6 6.8633 -8.6455 5.6460 22 6 4.0970 -4.7795 1.2864 23 6 3.6154 -3.3208 1.3075 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6808 -0.8904 27 1 3.5868 -3.1756 -0.8417 28 1 5.9830 -2.1211 0.7283 29 1 5.8365 -2.1300 -1.0459 30 1 7.1406 -4.0919 -0.1505 31 1 5.6901 -4.5780 -1.0630 32 1 7.5971 -6.9654 3.6022 33 1 5.1131 -7.2711 5.3042 34 1 8.0789 -6.8431 6.2305 35 1 6.6355 -7.1698 7.3311 36 1 6.2378 -9.3805 6.1527 37 1 7.6814 -9.0532 5.0522 38 1 3.5783 -5.3270 0.4995 39 1 3.8975 -5.2456 2.2513 40 1 4.0700 -2.7972 2.1486 41 1 2.5303 -3.2980 1.4084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577513277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:38 Heat of formation + Delta-G solvation = -35.541601 kcal Electronic energy + Delta-G solvation = -22049.005402 eV Core-core repulsion = 18737.108471 eV Total energy + Delta-G solvation = -3311.896931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01578 -39.08902 -37.59945 -37.37995 -34.19177 -33.03486 -32.11824 -30.77252 -28.68498 -26.04369 -24.02655 -22.97213 -22.81109 -21.96710 -21.15437 -20.36385 -19.13841 -17.72761 -17.30704 -16.71238 -16.35656 -15.80773 -15.28575 -14.89249 -14.63208 -14.35789 -14.00166 -13.72818 -13.48131 -13.22141 -13.00517 -12.85491 -12.30744 -12.14569 -12.01823 -11.81366 -11.48011 -11.34056 -11.11175 -10.97341 -10.78764 -10.64883 -10.29685 -9.99275 -9.70389 -9.53788 -9.24906 -9.08594 -8.86707 -8.53339 -8.50723 -6.02095 -3.99211 1.28755 2.16892 3.03544 3.31729 3.38304 3.39657 3.43448 3.52695 4.18494 4.32964 4.47207 4.51676 4.57299 5.15818 5.20840 5.27080 5.31073 5.32656 5.40871 5.48886 5.58509 5.63739 5.65005 5.83861 5.89032 5.95990 6.21845 6.29843 6.33354 6.47936 6.56088 6.82670 6.87255 6.91371 7.03072 7.26632 7.33440 7.47206 7.66089 7.82164 7.90984 8.56336 9.02992 9.61042 11.11235 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.003632 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.891501 B = 7706.560285 C = 8209.750351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.076 4.076 11 C -0.131 4.131 12 C 0.108 3.892 13 N -0.566 5.566 14 C 0.505 3.495 15 O -0.537 6.537 16 C 0.515 3.485 17 O -0.498 6.498 18 N -0.675 5.675 19 C 0.074 3.926 20 C -0.190 4.190 21 C -0.186 4.186 22 C 0.045 3.955 23 C -0.113 4.113 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.149 0.851 40 H 0.056 0.944 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.995 -15.670 8.444 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.046 4.046 10 C -0.094 4.094 11 C -0.170 4.170 12 C -0.013 4.013 13 N -0.298 5.298 14 C 0.287 3.713 15 O -0.416 6.416 16 C 0.298 3.702 17 O -0.374 6.374 18 N -0.326 5.326 19 C -0.032 4.032 20 C -0.229 4.229 21 C -0.224 4.224 22 C -0.076 4.076 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.250 0.750 33 H 0.161 0.839 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.165 0.835 40 H 0.075 0.925 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.616 -15.434 8.507 22.896 hybrid contribution 0.762 0.997 -0.255 1.280 sum 15.377 -14.437 8.252 22.649 Atomic orbital electron populations 1.69912 1.06264 1.26783 1.51402 1.25027 0.94693 0.99093 0.94727 0.86811 0.80392 0.83844 0.78401 1.20417 1.21499 1.19092 1.21143 0.89410 0.94358 1.50365 0.90799 1.19615 0.97228 0.91633 0.96151 1.21065 0.91923 0.99154 0.97298 1.22069 0.98293 0.94280 1.02312 1.21834 1.00036 0.93020 0.86444 1.48123 1.08904 1.48473 1.24304 1.19819 0.86180 0.80657 0.84671 1.90724 1.16723 1.59345 1.74772 1.20347 0.85597 0.78955 0.85318 1.90386 1.17554 1.58318 1.71161 1.45166 1.16447 1.49353 1.21670 1.21736 0.98714 0.99005 0.83720 1.23456 1.01821 1.00385 0.97202 1.23408 1.03736 0.91577 1.03711 1.23512 0.77067 1.00306 1.06679 1.21899 1.02749 0.92568 0.97901 0.92825 0.96690 0.97110 0.91734 0.92008 0.90842 0.89476 0.90981 0.75022 0.83874 0.88240 0.87615 0.87528 0.88242 0.91787 0.83458 0.92473 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.51 -14.32 8.94 -34.44 -0.31 -14.63 16 8 H 0.07 2.19 7.30 -52.48 -0.38 1.81 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.08 -1.45 2.10 -90.58 -0.19 -1.64 16 11 C -0.13 -2.09 5.36 -26.61 -0.14 -2.23 16 12 C 0.11 1.54 6.41 -3.71 -0.02 1.52 16 13 N -0.57 -8.51 2.97 -173.01 -0.51 -9.02 16 14 C 0.50 7.38 7.74 -11.59 -0.09 7.29 16 15 O -0.54 -8.41 15.94 5.49 0.09 -8.33 16 16 C 0.52 6.77 7.78 -11.59 -0.09 6.68 16 17 O -0.50 -7.45 12.67 5.50 0.07 -7.38 16 18 N -0.68 -6.75 5.56 -54.24 -0.30 -7.05 16 19 C 0.07 0.61 6.43 -67.93 -0.44 0.17 16 20 C -0.19 -1.21 10.46 -26.73 -0.28 -1.49 16 21 C -0.19 -1.08 10.46 -26.73 -0.28 -1.36 16 22 C 0.04 0.69 6.30 -3.48 -0.02 0.67 16 23 C -0.11 -2.08 5.21 -26.38 -0.14 -2.22 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 1.21 7.05 -51.93 -0.37 0.84 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.41 3.59 8.32 -40.82 -0.34 3.25 16 33 H 0.14 1.30 7.40 -51.92 -0.38 0.92 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.15 2.33 3.78 -56.75 -0.21 2.11 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.83 6.91 -51.93 -0.36 1.47 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -31.83 330.73 -7.97 -39.80 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.21 Total: 2.62 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -2.20 Total: -5.75 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.04 Total: -43.09 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.16 Total: -15.70 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.83 -7.97 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577513277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.255 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds