Wall clock time and date at job start Tue Mar 31 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00253 * 2 1 4 4 H 1.48501 * 109.47336 * 270.00445 * 3 2 1 5 5 H 1.48510 * 109.46859 * 30.00083 * 3 2 1 6 6 H 1.48503 * 109.47258 * 149.99974 * 3 2 1 7 7 C 1.37879 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00360 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.45698 * 175.00551 * 10 9 7 12 12 C 1.53199 * 109.30897 * 181.38350 * 11 10 9 13 13 N 1.46922 * 108.77614 * 305.35857 * 12 11 10 14 14 C 1.34774 * 120.63471 * 233.58732 * 13 12 11 15 15 O 1.21353 * 119.99848 * 353.19722 * 14 13 12 16 16 C 1.49447 * 120.00129 * 173.47407 * 14 13 12 17 17 O 1.21344 * 120.00029 * 353.17582 * 16 14 13 18 18 N 1.34774 * 119.99991 * 173.17706 * 16 14 13 19 19 C 1.46497 * 120.00182 * 179.97438 * 18 16 14 20 20 C 1.52996 * 117.50344 * 223.62546 * 19 18 16 21 21 C 1.52999 * 117.49990 * 154.99889 * 19 18 16 22 22 C 1.46928 * 118.73750 * 53.86510 * 13 12 11 23 23 C 1.53048 * 109.45845 * 295.06816 * 10 9 7 24 24 H 0.96998 * 119.99969 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46765 * 60.00215 * 9 7 2 26 26 H 1.08999 * 109.46926 * 300.00770 * 9 7 2 27 27 H 1.08993 * 109.46280 * 55.02888 * 10 9 7 28 28 H 1.08993 * 109.50476 * 61.43407 * 11 10 9 29 29 H 1.09004 * 109.52239 * 301.34258 * 11 10 9 30 30 H 1.09001 * 109.58397 * 185.57499 * 12 11 10 31 31 H 1.08999 * 109.70351 * 65.21758 * 12 11 10 32 32 H 0.97007 * 120.00162 * 0.02562 * 18 16 14 33 33 H 1.09008 * 115.54641 * 9.33229 * 19 18 16 34 34 H 1.09001 * 117.49573 * 359.97438 * 20 19 18 35 35 H 1.08992 * 117.50366 * 145.01983 * 20 19 18 36 36 H 1.09000 * 117.50151 * 214.97824 * 21 19 18 37 37 H 1.08995 * 117.49695 * 0.02562 * 21 19 18 38 38 H 1.08994 * 109.59023 * 65.92161 * 22 13 12 39 39 H 1.08998 * 109.58734 * 186.35515 * 22 13 12 40 40 H 1.09007 * 109.49787 * 298.57047 * 23 10 9 41 41 H 1.09001 * 109.49736 * 58.62703 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5466 -2.6382 -0.1261 12 6 6.0506 -4.0845 -0.1605 13 7 5.5425 -4.7906 1.0236 14 6 6.3857 -5.4408 1.8498 15 8 7.5577 -5.5525 1.5556 16 6 5.8761 -6.0297 3.1253 17 8 4.7345 -5.8177 3.4779 18 7 6.6844 -6.7962 3.8839 19 6 6.1850 -7.3730 5.1346 20 6 7.1031 -7.3120 6.3569 21 6 6.8633 -8.6455 5.6460 22 6 4.0970 -4.7795 1.2864 23 6 3.6154 -3.3208 1.3075 24 1 -0.4850 0.8400 0.0004 25 1 3.8751 -0.6798 0.8895 26 1 3.8745 -0.6808 -0.8904 27 1 3.5868 -3.1756 -0.8417 28 1 5.9830 -2.1211 0.7283 29 1 5.8365 -2.1300 -1.0459 30 1 7.1406 -4.0919 -0.1505 31 1 5.6901 -4.5780 -1.0630 32 1 7.5971 -6.9654 3.6022 33 1 5.1131 -7.2711 5.3042 34 1 8.0789 -6.8431 6.2305 35 1 6.6355 -7.1698 7.3311 36 1 6.2378 -9.3805 6.1527 37 1 7.6814 -9.0532 5.0522 38 1 3.5783 -5.3270 0.4995 39 1 3.8975 -5.2456 2.2513 40 1 4.0700 -2.7972 2.1486 41 1 2.5303 -3.2980 1.4084 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577513277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:37 Heat of formation + Delta-G solvation = -56.954101 kcal Electronic energy + Delta-G solvation = -22049.933917 eV Core-core repulsion = 18737.108471 eV Total energy + Delta-G solvation = -3312.825446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10336 -40.13305 -38.87061 -38.19279 -35.77060 -34.21011 -33.77817 -32.08295 -30.42832 -27.35738 -25.45793 -24.29850 -23.28383 -23.20384 -22.18566 -21.68403 -20.52102 -18.91477 -18.78746 -18.23583 -17.38076 -16.91647 -16.37527 -16.25623 -15.76578 -15.51205 -15.33342 -15.13463 -14.88440 -14.74649 -14.19804 -14.15087 -13.82872 -13.48909 -13.11083 -12.91089 -12.64836 -12.55074 -12.40244 -12.38548 -12.11845 -11.99222 -11.75057 -11.50032 -11.35219 -11.29825 -10.95631 -10.72804 -10.16754 -9.92934 -9.77694 -8.25272 -6.27087 0.21595 1.19292 1.35408 1.37654 1.48941 1.99220 2.36175 2.38085 2.94627 3.10105 3.16042 3.73120 3.91843 3.98403 4.02042 4.03323 4.06137 4.18504 4.38959 4.48946 4.61163 4.66288 4.77305 4.83157 4.86545 4.95607 5.02320 5.04863 5.15030 5.20503 5.21012 5.27102 5.36163 5.44472 5.56147 5.70945 5.73646 5.94655 6.17546 6.34736 6.62908 6.80414 6.86037 7.36549 8.91290 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.026663 B = 0.003632 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.891501 B = 7706.560285 C = 8209.750351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.251 1.251 7 C -0.517 4.517 8 H 0.039 0.961 9 C -0.007 4.007 10 C -0.073 4.073 11 C -0.123 4.123 12 C 0.111 3.889 13 N -0.572 5.572 14 C 0.506 3.494 15 O -0.546 6.546 16 C 0.513 3.487 17 O -0.523 6.523 18 N -0.658 5.658 19 C 0.043 3.957 20 C -0.182 4.182 21 C -0.165 4.165 22 C 0.057 3.943 23 C -0.108 4.108 24 H 0.264 0.736 25 H 0.012 0.988 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.421 0.579 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.151 0.849 40 H 0.047 0.953 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.740 -16.250 8.804 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.174 1.174 7 C -0.555 4.555 8 H 0.057 0.943 9 C -0.044 4.044 10 C -0.091 4.091 11 C -0.161 4.161 12 C -0.011 4.011 13 N -0.303 5.303 14 C 0.288 3.712 15 O -0.425 6.425 16 C 0.295 3.705 17 O -0.402 6.402 18 N -0.309 5.309 19 C -0.062 4.062 20 C -0.220 4.220 21 C -0.203 4.203 22 C -0.063 4.063 23 C -0.146 4.146 24 H 0.073 0.927 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.259 0.741 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.167 0.833 40 H 0.066 0.934 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.413 -16.049 8.879 25.291 hybrid contribution -0.106 1.073 -0.311 1.122 sum 17.307 -14.977 8.567 24.438 Atomic orbital electron populations 1.70067 1.08185 1.27862 1.53309 1.25969 0.95534 1.03287 0.94635 0.85726 0.79418 0.78808 0.79069 1.19170 1.21369 1.17431 1.21475 0.91899 0.93030 1.49140 0.94313 1.19579 0.94107 0.94627 0.96088 1.20979 0.94488 0.96360 0.97321 1.21965 0.95210 0.95852 1.03031 1.21872 1.00549 0.91840 0.86796 1.48149 1.08509 1.48870 1.24789 1.20047 0.85913 0.80310 0.84893 1.90713 1.16985 1.59748 1.75080 1.20135 0.85608 0.79521 0.85203 1.90366 1.18535 1.59636 1.71651 1.45131 1.16309 1.47798 1.21635 1.21901 0.98702 1.01805 0.83817 1.23538 1.01279 1.00620 0.96569 1.23510 1.03285 0.91029 1.02497 1.23321 0.77701 0.98015 1.07297 1.21765 1.00800 0.94691 0.97352 0.92739 0.97013 0.96300 0.92153 0.92439 0.89106 0.88470 0.89424 0.74141 0.85127 0.87816 0.86684 0.86139 0.87205 0.90953 0.83308 0.93392 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 2 C 0.00 0.11 5.47 84.66 0.46 0.58 16 3 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 7 C -0.52 -29.51 8.94 25.60 0.23 -29.28 16 8 H 0.04 2.41 7.30 -2.91 -0.02 2.39 16 9 C -0.01 -0.31 3.52 29.85 0.10 -0.20 16 10 C -0.07 -2.75 2.10 -10.77 -0.02 -2.77 16 11 C -0.12 -3.65 5.36 30.67 0.16 -3.49 16 12 C 0.11 2.90 6.41 86.37 0.55 3.46 16 13 N -0.57 -16.40 2.97 -819.64 -2.43 -18.83 16 14 C 0.51 14.07 7.74 87.27 0.68 14.75 16 15 O -0.55 -16.05 15.94 -3.26 -0.05 -16.10 16 16 C 0.51 13.07 7.78 87.27 0.68 13.75 16 17 O -0.52 -15.62 12.67 -3.23 -0.04 -15.66 16 18 N -0.66 -12.25 5.56 -443.88 -2.47 -14.72 16 19 C 0.04 0.65 6.43 44.99 0.29 0.93 16 20 C -0.18 -1.91 10.46 30.59 0.32 -1.59 16 21 C -0.17 -1.49 10.46 30.59 0.32 -1.17 16 22 C 0.06 1.77 6.30 86.51 0.54 2.32 16 23 C -0.11 -4.04 5.21 30.82 0.16 -3.88 16 24 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 26 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 27 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.10 2.41 7.05 -2.39 -0.02 2.40 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.42 6.51 8.32 -92.70 -0.77 5.74 16 33 H 0.13 2.34 7.40 -2.38 -0.02 2.32 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.15 4.73 3.78 -78.78 -0.30 4.44 16 40 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.06 2.57 6.91 -2.39 -0.02 2.56 16 Total: -1.00 -69.40 330.73 1.60 -67.80 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.08 Total: 17.28 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 4.48 Total: -6.60 kcal Atomic # 7 Polarization: -88.89 SS G_CDS: -4.60 Total: -93.48 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.09 Total: -31.76 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -69.40 1.60 -67.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577513277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.845 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds