Wall clock time and date at job start Tue Mar 31 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47112 * 240.00369 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.46990 * 127.02801 * 0.02562 * 15 13 12 17 17 C 1.50770 * 106.56223 * 180.02562 * 16 15 13 18 18 O 1.21284 * 125.42251 * 179.97438 * 17 16 15 19 19 N 1.34303 * 109.15071 * 0.02562 * 17 16 15 20 20 C 1.46500 * 124.85352 * 179.97438 * 19 17 16 21 21 C 1.52999 * 117.49962 * 8.64477 * 20 19 17 22 22 C 1.53000 * 117.49543 * 300.02170 * 20 19 17 23 23 C 1.46228 * 110.29183 * 359.73162 * 19 17 16 24 24 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 1.09000 * 110.03569 * 299.28032 * 16 15 13 34 34 H 1.08998 * 110.03592 * 60.72611 * 16 15 13 35 35 H 1.08996 * 115.55210 * 154.35724 * 20 19 17 36 36 H 1.08999 * 117.49768 * 0.02562 * 21 20 19 37 37 H 1.09000 * 117.49825 * 145.02390 * 21 20 19 38 38 H 1.09002 * 117.49460 * 214.98084 * 22 20 19 39 39 H 1.08999 * 117.50513 * 0.02562 * 22 20 19 40 40 H 1.08999 * 109.88246 * 240.71343 * 23 19 17 41 41 H 1.09000 * 109.62559 * 120.01909 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0009 15 7 2.3950 -8.6223 -0.0018 16 6 3.8539 -8.8022 -0.0013 17 6 4.1036 -10.2890 -0.0022 18 8 5.1947 -10.8186 -0.0025 19 7 2.9254 -10.9337 -0.0037 20 6 2.7679 -12.3902 -0.0055 21 6 4.0258 -13.2370 0.1984 22 6 3.3679 -13.1641 -1.1810 23 6 1.8222 -9.9739 0.0025 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8898 27 1 2.8726 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8528 -5.0446 -0.8905 30 1 0.8546 -5.0450 0.8894 31 1 3.1007 -6.0922 -0.8922 32 1 3.1019 -6.0922 0.8878 33 1 4.2861 -8.3506 -0.8942 34 1 4.2854 -8.3511 0.8922 35 1 1.8357 -12.7628 0.4191 36 1 4.9704 -12.7104 0.3343 37 1 3.9213 -14.1669 0.7573 38 1 2.8306 -14.0461 -1.5296 39 1 3.8801 -12.5897 -1.9529 40 1 1.2146 -10.1132 0.8966 41 1 1.2076 -10.1168 -0.8864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588724417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:13 Heat of formation + Delta-G solvation = -36.206031 kcal Electronic energy + Delta-G solvation = -21083.409897 eV Core-core repulsion = 17771.484154 eV Total energy + Delta-G solvation = -3311.925742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49718 -39.52076 -37.21073 -36.93428 -34.96942 -33.19405 -32.55079 -29.83597 -29.04522 -26.60282 -24.87834 -23.58260 -22.80886 -22.21065 -20.28138 -20.07657 -19.55835 -17.69680 -17.26594 -16.74005 -16.16916 -15.90471 -15.63810 -15.57697 -14.98140 -14.45658 -14.34293 -14.13011 -13.86395 -13.64993 -13.15436 -13.04626 -12.64559 -12.27272 -11.98389 -11.74284 -11.65272 -11.63933 -10.99373 -10.97318 -10.57802 -10.56979 -10.45034 -10.32503 -10.02241 -9.64614 -9.52855 -9.26693 -9.01963 -8.88857 -8.31184 -5.96117 -3.98768 1.89752 1.93106 2.41947 2.54010 3.33407 3.34973 3.39484 3.41613 3.69941 4.18002 4.29332 4.43832 4.48654 4.49403 4.79720 4.82037 4.85682 4.92021 5.07320 5.18827 5.24972 5.27495 5.38916 5.39226 5.50083 5.70853 5.76402 6.05881 6.07068 6.23012 6.45097 6.49228 6.78574 6.93851 7.04009 7.17605 7.49778 7.72296 7.87851 7.88793 8.04823 8.46390 9.08657 9.64938 11.15128 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.049320 B = 0.002426 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.590359 B =11540.448361 C =11992.504749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.105 4.105 12 C -0.132 4.132 13 C 0.545 3.455 14 O -0.518 6.518 15 N -0.635 5.635 16 C 0.070 3.930 17 C 0.520 3.480 18 O -0.510 6.510 19 N -0.599 5.599 20 C 0.083 3.917 21 C -0.185 4.185 22 C -0.187 4.187 23 C 0.337 3.663 24 H 0.261 0.739 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.808 -26.606 -0.154 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.172 4.172 13 C 0.335 3.665 14 O -0.392 6.392 15 N -0.375 5.375 16 C -0.057 4.057 17 C 0.307 3.693 18 O -0.386 6.386 19 N -0.333 5.333 20 C -0.020 4.020 21 C -0.222 4.222 22 C -0.226 4.226 23 C 0.128 3.872 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.467 -26.716 -0.151 27.488 hybrid contribution 0.405 0.854 -0.031 0.945 sum 6.872 -25.862 -0.183 26.760 Atomic orbital electron populations 1.69962 1.06043 1.26649 1.50810 1.25043 0.94851 0.99241 0.95441 0.86666 0.79569 0.83228 0.78559 1.20279 1.21334 1.20283 1.21239 0.92947 0.91186 1.50577 0.92792 1.19092 0.94043 0.91239 0.97341 1.21651 0.99112 0.93818 1.00203 1.21502 0.96989 0.92600 1.03177 1.21835 1.00187 0.90711 1.04439 1.20878 0.87823 0.83253 0.74507 1.90760 1.13739 1.86376 1.48302 1.48426 1.06832 1.05487 1.76803 1.21963 0.82744 0.94844 1.06119 1.20602 0.83998 0.89155 0.75495 1.90695 1.25434 1.72369 1.50079 1.47749 1.07251 1.05476 1.72776 1.21517 0.99748 0.76051 1.04706 1.23744 0.98435 1.01031 0.99039 1.23402 1.04143 1.02507 0.92533 1.21213 0.86317 0.76470 1.03165 0.92975 0.96568 0.96562 0.93369 0.93363 0.91597 0.91599 0.88686 0.88666 0.86928 0.86888 0.84684 0.85246 0.88043 0.87775 0.88517 0.89982 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.18 5.15 -26.73 -0.14 -2.31 16 11 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 12 C -0.13 -1.59 4.99 -27.88 -0.14 -1.73 16 13 C 0.54 6.90 7.88 -10.98 -0.09 6.81 16 14 O -0.52 -8.58 16.38 5.56 0.09 -8.49 16 15 N -0.64 -6.18 3.36 -178.23 -0.60 -6.78 16 16 C 0.07 0.55 6.67 -4.89 -0.03 0.51 16 17 C 0.52 4.99 7.99 -11.16 -0.09 4.90 16 18 O -0.51 -6.18 14.83 5.55 0.08 -6.10 16 19 N -0.60 -4.97 3.27 -169.97 -0.56 -5.52 16 20 C 0.08 0.56 6.90 -67.93 -0.47 0.09 16 21 C -0.19 -1.33 9.79 -26.73 -0.26 -1.59 16 22 C -0.19 -1.23 10.36 -26.73 -0.28 -1.50 16 23 C 0.34 2.84 7.57 -63.72 -0.48 2.36 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.13 1.27 5.38 -51.93 -0.28 0.99 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -34.12 344.94 -9.29 -43.41 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -6.58 Total: -4.33 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.64 Total: -7.58 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.42 Total: -38.84 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.17 Total: -14.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.12 -9.29 -43.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588724417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.206 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds