Wall clock time and date at job start Tue Mar 31 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47112 * 240.00369 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.46990 * 127.02801 * 0.02562 * 15 13 12 17 17 C 1.50770 * 106.56223 * 180.02562 * 16 15 13 18 18 O 1.21284 * 125.42251 * 179.97438 * 17 16 15 19 19 N 1.34303 * 109.15071 * 0.02562 * 17 16 15 20 20 C 1.46500 * 124.85352 * 179.97438 * 19 17 16 21 21 C 1.52999 * 117.49962 * 8.64477 * 20 19 17 22 22 C 1.53000 * 117.49543 * 300.02170 * 20 19 17 23 23 C 1.46228 * 110.29183 * 359.73162 * 19 17 16 24 24 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 1.09000 * 110.03569 * 299.28032 * 16 15 13 34 34 H 1.08998 * 110.03592 * 60.72611 * 16 15 13 35 35 H 1.08996 * 115.55210 * 154.35724 * 20 19 17 36 36 H 1.08999 * 117.49768 * 0.02562 * 21 20 19 37 37 H 1.09000 * 117.49825 * 145.02390 * 21 20 19 38 38 H 1.09002 * 117.49460 * 214.98084 * 22 20 19 39 39 H 1.08999 * 117.50513 * 0.02562 * 22 20 19 40 40 H 1.08999 * 109.88246 * 240.71343 * 23 19 17 41 41 H 1.09000 * 109.62559 * 120.01909 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0009 15 7 2.3950 -8.6223 -0.0018 16 6 3.8539 -8.8022 -0.0013 17 6 4.1036 -10.2890 -0.0022 18 8 5.1947 -10.8186 -0.0025 19 7 2.9254 -10.9337 -0.0037 20 6 2.7679 -12.3902 -0.0055 21 6 4.0258 -13.2370 0.1984 22 6 3.3679 -13.1641 -1.1810 23 6 1.8222 -9.9739 0.0025 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8898 27 1 2.8726 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8528 -5.0446 -0.8905 30 1 0.8546 -5.0450 0.8894 31 1 3.1007 -6.0922 -0.8922 32 1 3.1019 -6.0922 0.8878 33 1 4.2861 -8.3506 -0.8942 34 1 4.2854 -8.3511 0.8922 35 1 1.8357 -12.7628 0.4191 36 1 4.9704 -12.7104 0.3343 37 1 3.9213 -14.1669 0.7573 38 1 2.8306 -14.0461 -1.5296 39 1 3.8801 -12.5897 -1.9529 40 1 1.2146 -10.1132 0.8966 41 1 1.2076 -10.1168 -0.8864 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588724417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:13 Heat of formation + Delta-G solvation = -57.321591 kcal Electronic energy + Delta-G solvation = -21084.325536 eV Core-core repulsion = 17771.484154 eV Total energy + Delta-G solvation = -3312.841382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.23292 -40.46273 -37.92724 -37.67830 -36.59501 -34.63375 -33.83833 -31.44615 -29.74923 -27.99112 -26.20515 -24.20149 -23.82751 -23.31336 -21.72433 -21.06376 -20.38601 -18.47092 -18.35466 -18.01403 -17.50740 -16.80685 -16.64850 -16.48207 -16.33451 -15.67667 -15.46514 -14.91979 -14.68284 -14.51271 -14.33848 -14.04632 -13.84156 -13.61634 -13.51706 -13.25601 -12.78387 -12.54676 -12.37066 -12.23834 -12.13345 -12.10532 -11.48750 -11.39909 -11.33517 -11.23120 -10.99102 -10.82132 -10.51981 -10.28586 -9.58102 -8.16660 -6.28331 1.18964 1.21305 1.41949 1.45475 1.46233 1.53229 1.81551 2.43501 2.79086 3.04655 3.16123 3.38288 3.69552 3.90336 3.97263 4.01711 4.13481 4.19540 4.21815 4.25928 4.32429 4.48067 4.61759 4.70877 4.72931 4.75803 4.85836 4.91862 4.97077 5.19913 5.21994 5.35737 5.40754 5.44838 5.59794 5.77133 5.82121 5.91477 6.18635 6.28064 6.77441 6.90332 6.96888 7.41109 8.95191 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.049320 B = 0.002426 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.590359 B =11540.448361 C =11992.504749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.122 4.122 13 C 0.549 3.451 14 O -0.566 6.566 15 N -0.629 5.629 16 C 0.070 3.930 17 C 0.514 3.486 18 O -0.541 6.541 19 N -0.597 5.597 20 C 0.076 3.924 21 C -0.191 4.191 22 C -0.183 4.183 23 C 0.336 3.664 24 H 0.262 0.738 25 H -0.015 1.015 26 H -0.014 1.014 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.162 0.838 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.601 -27.216 -0.067 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.162 4.162 13 C 0.340 3.660 14 O -0.444 6.444 15 N -0.367 5.367 16 C -0.055 4.055 17 C 0.302 3.698 18 O -0.418 6.418 19 N -0.329 5.329 20 C -0.026 4.026 21 C -0.228 4.228 22 C -0.221 4.221 23 C 0.128 3.872 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.004 0.996 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.179 0.821 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.108 0.892 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.294 -27.367 -0.066 28.596 hybrid contribution -0.171 0.970 -0.065 0.987 sum 8.123 -26.397 -0.131 27.618 Atomic orbital electron populations 1.70120 1.07994 1.27748 1.51925 1.26074 0.95779 1.03660 0.94911 0.85466 0.78182 0.77873 0.79308 1.18969 1.21204 1.18968 1.21741 0.93744 0.92279 1.50134 0.91598 1.19063 0.94736 0.93730 0.94407 1.21444 0.97813 0.92667 1.01430 1.21276 0.97456 0.93322 1.01467 1.21708 0.99022 0.88291 1.07143 1.20807 0.87122 0.84049 0.73987 1.90752 1.15714 1.87064 1.50864 1.48233 1.07838 1.05317 1.75327 1.22156 0.81383 0.93917 1.08063 1.20877 0.83836 0.89961 0.75091 1.90698 1.26485 1.73037 1.51602 1.47865 1.06849 1.06186 1.72041 1.21888 1.00601 0.75209 1.04898 1.23689 0.97426 1.01743 0.99967 1.23417 1.03912 1.03001 0.91810 1.21288 0.86288 0.75859 1.03765 0.92905 0.99622 0.99602 0.91989 0.92006 0.93466 0.93435 0.85939 0.85872 0.84992 0.84856 0.82051 0.87965 0.86050 0.85536 0.90373 0.89246 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.12 16 2 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 7 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.71 5.15 30.59 0.16 -3.55 16 11 C -0.10 -3.21 4.50 30.59 0.14 -3.07 16 12 C -0.12 -2.63 4.99 29.85 0.15 -2.48 16 13 C 0.55 13.02 7.88 87.66 0.69 13.71 16 14 O -0.57 -18.67 16.38 -3.02 -0.05 -18.72 16 15 N -0.63 -10.86 3.36 -836.20 -2.81 -13.67 16 16 C 0.07 0.91 6.67 85.56 0.57 1.48 16 17 C 0.51 9.11 7.99 87.75 0.70 9.81 16 18 O -0.54 -12.79 14.83 -3.04 -0.05 -12.83 16 19 N -0.60 -8.94 3.27 -810.31 -2.65 -11.59 16 20 C 0.08 0.89 6.90 44.99 0.31 1.20 16 21 C -0.19 -2.53 9.79 30.60 0.30 -2.23 16 22 C -0.18 -2.14 10.36 30.60 0.32 -1.83 16 23 C 0.34 5.09 7.57 170.95 1.29 6.38 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 30 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 31 H 0.12 2.01 8.14 -2.39 -0.02 2.00 16 32 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.16 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.10 2.01 5.38 -2.39 -0.01 2.00 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -76.51 344.94 3.24 -73.27 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.00 Total: 5.29 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.47 Total: -10.02 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -5.17 Total: -83.38 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.09 Total: -31.56 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -76.51 3.24 -73.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588724417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.951 kcal (2) G-P(sol) polarization free energy of solvation -76.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds