Wall clock time and date at job start Tue Mar 31 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00035 * 2 1 4 4 H 1.48493 * 109.47288 * 240.00150 * 3 2 1 5 5 H 1.48499 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46711 * 120.00400 * 3 2 1 7 7 C 1.37879 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 172.13488 * 7 2 1 9 9 C 1.50699 * 119.99587 * 352.12699 * 7 2 1 10 10 C 1.53000 * 115.55543 * 294.79950 * 9 7 2 11 11 N 1.46498 * 109.47274 * 275.59205 * 10 9 7 12 12 C 1.34773 * 120.00308 * 185.00638 * 11 10 9 13 13 O 1.21591 * 119.99973 * 4.98860 * 12 11 10 14 14 N 1.34770 * 120.00498 * 184.99860 * 12 11 10 15 15 C 1.48148 * 127.83526 * 355.01275 * 14 12 11 16 16 C 1.54395 * 104.61781 * 219.60831 * 15 14 12 17 17 H 1.08999 * 118.18190 * 115.79544 * 16 15 14 18 18 C 1.52994 * 118.12387 * 272.80755 * 16 15 14 19 19 H 1.08995 * 117.44206 * 343.93888 * 18 16 15 20 20 C 1.52999 * 117.44421 * 199.19063 * 18 16 15 21 21 O 1.42905 * 109.47258 * 175.00295 * 20 18 16 22 22 C 1.53007 * 60.55593 * 91.54014 * 18 16 15 23 23 H 1.09006 * 119.53767 * 111.76742 * 22 18 16 24 24 C 1.48148 * 127.84401 * 175.04527 * 14 12 11 25 25 C 1.53004 * 117.51505 * 80.50371 * 9 7 2 26 26 C 1.53004 * 117.49713 * 149.13279 * 9 7 2 27 27 H 0.97001 * 119.99884 * 4.99571 * 1 2 3 28 28 H 1.08997 * 109.47364 * 155.58386 * 10 9 7 29 29 H 1.09003 * 109.46877 * 35.58930 * 10 9 7 30 30 H 0.97005 * 119.99786 * 4.99944 * 11 10 9 31 31 H 1.08996 * 110.40866 * 100.82587 * 15 14 12 32 32 H 1.08995 * 110.40561 * 338.39187 * 15 14 12 33 33 H 1.08993 * 109.47280 * 55.00149 * 20 18 16 34 34 H 1.09007 * 109.46702 * 295.00015 * 20 18 16 35 35 H 0.96696 * 113.99908 * 179.97438 * 21 20 18 36 36 H 1.08999 * 110.40329 * 21.60103 * 24 14 12 37 37 H 1.09003 * 110.50590 * 259.22821 * 24 14 12 38 38 H 1.09000 * 117.49283 * 214.96246 * 25 9 7 39 39 H 1.08989 * 117.50237 * 359.97438 * 25 9 7 40 40 H 1.09005 * 117.49474 * 359.97338 * 26 9 7 41 41 H 1.08996 * 117.50229 * 144.99619 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0769 -1.1984 -0.1285 9 6 1.2617 -2.4930 0.1777 10 6 0.5859 -2.6858 1.5367 11 7 1.5593 -3.2145 2.4955 12 6 1.1635 -3.5598 3.7367 13 8 -0.0152 -3.5185 4.0324 14 7 2.0741 -3.9505 4.6501 15 6 3.5272 -4.1609 4.4524 16 6 3.8545 -5.4223 5.2802 17 1 4.1988 -6.3106 4.7505 18 6 4.2020 -5.2441 6.7594 19 1 4.4641 -4.2413 7.0966 20 6 4.9462 -6.3877 7.4517 21 8 5.2849 -5.9980 8.7842 22 6 2.7480 -5.4928 6.3531 23 1 2.2680 -6.4336 6.6227 24 6 1.8491 -4.2679 6.0796 25 6 0.5615 -3.0809 -1.0492 26 6 1.8349 -3.7346 -0.5086 27 1 -0.4850 0.8369 -0.0732 28 1 -0.2417 -3.3877 1.4347 29 1 0.2079 -1.7278 1.8937 30 1 2.4887 -3.3162 2.2369 31 1 4.0894 -3.3049 4.8256 32 1 3.7466 -4.3305 3.3983 33 1 5.8564 -6.6169 6.8978 34 1 4.3076 -7.2706 7.4826 35 1 5.7594 -6.6764 9.2838 36 1 0.8025 -4.5181 6.2532 37 1 2.1479 -3.4292 6.7086 38 1 -0.3805 -3.6050 -0.8879 39 1 0.6377 -2.5280 -1.9853 40 1 2.7492 -3.6116 -1.0893 41 1 1.7307 -4.6886 0.0081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589926472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:34 Heat of formation + Delta-G solvation = -14.638662 kcal Electronic energy + Delta-G solvation = -21894.967806 eV Core-core repulsion = 18583.977295 eV Total energy + Delta-G solvation = -3310.990511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44611 -38.61479 -36.96295 -36.55018 -33.67079 -33.01235 -32.03766 -28.59386 -28.08880 -26.18853 -25.19131 -23.72559 -21.26211 -20.87311 -20.39940 -19.43923 -19.30770 -17.80186 -17.66634 -16.13188 -15.69450 -15.51386 -15.27286 -14.88796 -14.64771 -14.08581 -13.71300 -13.57557 -13.50389 -13.05667 -12.65362 -12.63269 -12.15162 -11.69087 -11.64169 -11.51726 -11.40771 -10.96874 -10.92140 -10.73689 -10.53585 -10.33667 -10.28405 -9.92717 -9.69869 -9.44534 -9.04551 -8.61266 -8.58782 -8.21653 -7.96488 -6.07406 -4.14347 2.96286 3.16405 3.28073 3.34515 3.35570 3.60004 3.85728 4.32782 4.35979 4.45403 4.64500 4.79846 4.88795 4.94071 5.04827 5.12111 5.15803 5.24243 5.38024 5.38953 5.60512 5.80421 5.82281 5.91355 6.00245 6.01632 6.28276 6.33518 6.48155 6.62459 6.68543 6.90609 7.05492 7.25622 7.32219 7.41826 7.52393 7.59576 7.84762 8.35188 8.57864 8.84925 9.17716 9.50515 11.00324 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.003781 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.054121 B = 7403.182960 C = 7743.404400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.181 3.819 11 N -0.723 5.723 12 C 0.723 3.277 13 O -0.597 6.597 14 N -0.646 5.646 15 C 0.132 3.868 16 C -0.165 4.165 17 H 0.121 0.879 18 C -0.115 4.115 19 H 0.114 0.886 20 C 0.108 3.892 21 O -0.571 6.571 22 C -0.167 4.167 23 H 0.120 0.880 24 C 0.152 3.848 25 C -0.164 4.164 26 C -0.208 4.208 27 H 0.263 0.737 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.393 0.607 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.381 0.619 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.438 -12.581 12.179 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.058 3.942 11 N -0.376 5.376 12 C 0.425 3.575 13 O -0.475 6.475 14 N -0.386 5.386 15 C 0.008 3.992 16 C -0.184 4.184 17 H 0.139 0.861 18 C -0.134 4.134 19 H 0.132 0.868 20 C 0.030 3.970 21 O -0.377 6.377 22 C -0.186 4.186 23 H 0.138 0.862 24 C 0.028 3.972 25 C -0.202 4.202 26 C -0.246 4.246 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.096 0.904 30 H 0.227 0.773 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.228 0.772 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.934 -11.762 12.117 19.105 hybrid contribution 1.176 0.222 -0.139 1.205 sum 10.110 -11.540 11.978 19.465 Atomic orbital electron populations 1.69956 1.05909 1.27159 1.47937 1.24988 0.94807 0.98991 0.94351 0.86672 0.79669 0.83120 0.78620 1.20276 1.21219 1.20155 1.20383 0.93155 0.88787 1.51552 0.92182 1.19065 0.97675 0.91381 0.88387 1.20916 0.88379 0.97668 0.87239 1.45327 1.13413 1.67837 1.11013 1.15471 0.83690 0.78029 0.80325 1.90885 1.15176 1.61831 1.79649 1.48326 1.07273 1.73128 1.09862 1.21693 0.82081 0.95337 1.00091 1.23720 1.04114 1.00726 0.89852 0.86067 1.22289 0.95668 1.00735 0.94712 0.86807 1.21604 0.97627 0.94861 0.82873 1.86486 1.79625 1.45623 1.25920 1.23908 0.89811 1.00821 1.04053 0.86211 1.21478 1.00106 0.94537 0.81080 1.22709 0.93346 1.03598 1.00584 1.22877 0.97818 0.96968 1.06905 0.92672 0.94254 0.90414 0.77333 0.90845 0.89842 0.92812 0.93276 0.77226 0.89400 0.91258 0.91614 0.89958 0.90424 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.56 12.60 55.43 0.70 -23.86 16 2 C 0.07 1.96 5.22 -17.82 -0.09 1.86 16 3 Si 0.89 20.79 29.55 -169.99 -5.02 15.76 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.50 -13.11 8.83 -34.44 -0.30 -13.41 16 8 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 9 C 0.04 0.85 1.32 -155.66 -0.21 0.65 16 10 C 0.18 4.32 5.53 -4.04 -0.02 4.29 16 11 N -0.72 -14.75 5.44 -65.23 -0.35 -15.11 16 12 C 0.72 14.78 8.56 -86.93 -0.74 14.04 16 13 O -0.60 -14.54 16.57 5.29 0.09 -14.45 16 14 N -0.65 -10.17 3.32 -175.02 -0.58 -10.75 16 15 C 0.13 1.56 6.68 -2.40 -0.02 1.55 16 16 C -0.16 -1.58 6.85 -89.22 -0.61 -2.19 16 17 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.12 -1.04 5.60 -90.62 -0.51 -1.55 16 19 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 20 C 0.11 0.77 7.32 37.16 0.27 1.05 16 21 O -0.57 -4.55 13.66 -35.23 -0.48 -5.03 16 22 C -0.17 -1.71 6.74 -89.22 -0.60 -2.31 16 23 H 0.12 1.11 8.12 -51.93 -0.42 0.69 16 24 C 0.15 2.01 6.87 -2.41 -0.02 1.99 16 25 C -0.16 -3.73 9.88 -26.73 -0.26 -4.00 16 26 C -0.21 -4.29 9.78 -26.73 -0.26 -4.55 16 27 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 28 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 29 H 0.08 2.13 7.26 -51.93 -0.38 1.76 16 30 H 0.39 7.18 6.87 -40.82 -0.28 6.90 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.95 6.96 -51.93 -0.36 0.59 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.30 7.94 -51.93 -0.41 -0.11 16 35 H 0.38 1.19 9.12 45.56 0.42 1.61 16 36 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 39 H 0.08 1.94 8.14 -51.94 -0.42 1.52 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 342.94 15.07 5.17 5.17 Total: -1.00 -32.38 342.94 -9.46 -41.84 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.60 Total: 9.01 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.37 Total: -2.58 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.24 Total: -49.72 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.39 Total: -19.49 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.38 -9.46 -41.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589926472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.203 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds