Wall clock time and date at job start Tue Mar 31 2020 02:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00035 * 2 1 4 4 H 1.48493 * 109.47288 * 240.00150 * 3 2 1 5 5 H 1.48499 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46711 * 120.00400 * 3 2 1 7 7 C 1.37879 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 172.13488 * 7 2 1 9 9 C 1.50699 * 119.99587 * 352.12699 * 7 2 1 10 10 C 1.53000 * 115.55543 * 294.79950 * 9 7 2 11 11 N 1.46498 * 109.47274 * 275.59205 * 10 9 7 12 12 C 1.34773 * 120.00308 * 185.00638 * 11 10 9 13 13 O 1.21591 * 119.99973 * 4.98860 * 12 11 10 14 14 N 1.34770 * 120.00498 * 184.99860 * 12 11 10 15 15 C 1.48148 * 127.83526 * 355.01275 * 14 12 11 16 16 C 1.54395 * 104.61781 * 219.60831 * 15 14 12 17 17 H 1.08999 * 118.18190 * 115.79544 * 16 15 14 18 18 C 1.52994 * 118.12387 * 272.80755 * 16 15 14 19 19 H 1.08995 * 117.44206 * 343.93888 * 18 16 15 20 20 C 1.52999 * 117.44421 * 199.19063 * 18 16 15 21 21 O 1.42905 * 109.47258 * 175.00295 * 20 18 16 22 22 C 1.53007 * 60.55593 * 91.54014 * 18 16 15 23 23 H 1.09006 * 119.53767 * 111.76742 * 22 18 16 24 24 C 1.48148 * 127.84401 * 175.04527 * 14 12 11 25 25 C 1.53004 * 117.51505 * 80.50371 * 9 7 2 26 26 C 1.53004 * 117.49713 * 149.13279 * 9 7 2 27 27 H 0.97001 * 119.99884 * 4.99571 * 1 2 3 28 28 H 1.08997 * 109.47364 * 155.58386 * 10 9 7 29 29 H 1.09003 * 109.46877 * 35.58930 * 10 9 7 30 30 H 0.97005 * 119.99786 * 4.99944 * 11 10 9 31 31 H 1.08996 * 110.40866 * 100.82587 * 15 14 12 32 32 H 1.08995 * 110.40561 * 338.39187 * 15 14 12 33 33 H 1.08993 * 109.47280 * 55.00149 * 20 18 16 34 34 H 1.09007 * 109.46702 * 295.00015 * 20 18 16 35 35 H 0.96696 * 113.99908 * 179.97438 * 21 20 18 36 36 H 1.08999 * 110.40329 * 21.60103 * 24 14 12 37 37 H 1.09003 * 110.50590 * 259.22821 * 24 14 12 38 38 H 1.09000 * 117.49283 * 214.96246 * 25 9 7 39 39 H 1.08989 * 117.50237 * 359.97438 * 25 9 7 40 40 H 1.09005 * 117.49474 * 359.97338 * 26 9 7 41 41 H 1.08996 * 117.50229 * 144.99619 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0769 -1.1984 -0.1285 9 6 1.2617 -2.4930 0.1777 10 6 0.5859 -2.6858 1.5367 11 7 1.5593 -3.2145 2.4955 12 6 1.1635 -3.5598 3.7367 13 8 -0.0152 -3.5185 4.0324 14 7 2.0741 -3.9505 4.6501 15 6 3.5272 -4.1609 4.4524 16 6 3.8545 -5.4223 5.2802 17 1 4.1988 -6.3106 4.7505 18 6 4.2020 -5.2441 6.7594 19 1 4.4641 -4.2413 7.0966 20 6 4.9462 -6.3877 7.4517 21 8 5.2849 -5.9980 8.7842 22 6 2.7480 -5.4928 6.3531 23 1 2.2680 -6.4336 6.6227 24 6 1.8491 -4.2679 6.0796 25 6 0.5615 -3.0809 -1.0492 26 6 1.8349 -3.7346 -0.5086 27 1 -0.4850 0.8369 -0.0732 28 1 -0.2417 -3.3877 1.4347 29 1 0.2079 -1.7278 1.8937 30 1 2.4887 -3.3162 2.2369 31 1 4.0894 -3.3049 4.8256 32 1 3.7466 -4.3305 3.3983 33 1 5.8564 -6.6169 6.8978 34 1 4.3076 -7.2706 7.4826 35 1 5.7594 -6.6764 9.2838 36 1 0.8025 -4.5181 6.2532 37 1 2.1479 -3.4292 6.7086 38 1 -0.3805 -3.6050 -0.8879 39 1 0.6377 -2.5280 -1.9853 40 1 2.7492 -3.6116 -1.0893 41 1 1.7307 -4.6886 0.0081 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589926472.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:34 Heat of formation + Delta-G solvation = -37.606103 kcal Electronic energy + Delta-G solvation = -21895.963749 eV Core-core repulsion = 18583.977295 eV Total energy + Delta-G solvation = -3311.986454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.59273 -39.98392 -38.47886 -37.45423 -35.12153 -34.42572 -34.03318 -29.65890 -29.08257 -27.89047 -26.89012 -24.92257 -23.00601 -21.63137 -21.37257 -21.11454 -20.89572 -19.27221 -18.21841 -17.96183 -17.02738 -16.84465 -16.54614 -16.33937 -15.81572 -15.52507 -15.22058 -14.81664 -14.77110 -14.39115 -13.97311 -13.63854 -13.58963 -13.35786 -13.21245 -12.93696 -12.78297 -12.52812 -12.37999 -12.10819 -12.05140 -11.57972 -11.37295 -11.35436 -10.96145 -10.90840 -10.55940 -10.51838 -10.16122 -10.07301 -9.51680 -8.11035 -6.22687 1.42508 1.45151 1.51321 1.57430 2.11561 2.41969 2.42392 3.03741 3.11148 3.17360 3.52815 3.56833 3.76430 4.05294 4.15835 4.19679 4.22359 4.37374 4.43928 4.53358 4.54323 4.64506 4.65217 4.71744 4.75967 4.77574 4.95154 4.98343 4.99041 5.11487 5.20146 5.24995 5.28239 5.55982 5.57296 5.68688 5.81016 6.11538 6.36122 6.82234 6.97360 7.05460 7.45097 7.58717 8.96421 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.003781 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.054121 B = 7403.182960 C = 7743.404400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.010 3.990 10 C 0.201 3.799 11 N -0.716 5.716 12 C 0.717 3.283 13 O -0.645 6.645 14 N -0.644 5.644 15 C 0.122 3.878 16 C -0.152 4.152 17 H 0.145 0.855 18 C -0.103 4.103 19 H 0.103 0.897 20 C 0.109 3.891 21 O -0.595 6.595 22 C -0.171 4.171 23 H 0.133 0.867 24 C 0.144 3.856 25 C -0.174 4.174 26 C -0.170 4.170 27 H 0.260 0.740 28 H 0.026 0.974 29 H 0.033 0.967 30 H 0.405 0.595 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.297 -14.163 12.719 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.177 4.177 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.009 3.991 10 C 0.076 3.924 11 N -0.370 5.370 12 C 0.419 3.581 13 O -0.528 6.528 14 N -0.382 5.382 15 C 0.000 4.000 16 C -0.171 4.171 17 H 0.163 0.837 18 C -0.122 4.122 19 H 0.121 0.879 20 C 0.032 3.968 21 O -0.404 6.404 22 C -0.190 4.190 23 H 0.151 0.849 24 C 0.021 3.979 25 C -0.213 4.213 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.241 0.759 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.251 0.749 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.884 -13.383 12.688 21.939 hybrid contribution 0.320 0.686 -0.234 0.792 sum 12.204 -12.697 12.454 21.570 Atomic orbital electron populations 1.70088 1.07353 1.27532 1.49527 1.25722 0.95446 1.02188 0.94357 0.85728 0.78410 0.79299 0.78898 1.19188 1.21678 1.19792 1.20719 0.93462 0.89840 1.50498 0.91802 1.19031 0.99187 0.92411 0.88450 1.20402 0.88809 0.95155 0.88015 1.45045 1.13350 1.67774 1.10809 1.15625 0.83733 0.77986 0.80711 1.90842 1.17611 1.63792 1.80520 1.48357 1.08438 1.71480 1.09970 1.21976 0.79478 0.97124 1.01382 1.23715 1.03464 1.00126 0.89843 0.83697 1.22326 0.94341 1.01242 0.94287 0.87866 1.21637 0.98420 0.94061 0.82701 1.86427 1.80186 1.47256 1.26510 1.23819 0.89985 0.99749 1.05469 0.84895 1.21646 1.00097 0.96426 0.79748 1.22673 0.94887 1.04206 0.99511 1.22883 0.96910 0.96213 1.04699 0.93101 0.95543 0.94842 0.75916 0.90016 0.88997 0.90947 0.91944 0.74896 0.91226 0.90722 0.91279 0.91251 0.89091 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.39 12.60 21.45 0.27 -52.12 16 2 C 0.02 1.28 5.22 84.65 0.44 1.72 16 3 Si 0.95 42.81 29.55 68.60 2.03 44.83 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.51 -26.41 8.83 25.60 0.23 -26.18 16 8 H 0.06 3.20 7.83 -2.92 -0.02 3.17 16 9 C 0.01 0.48 1.32 -52.93 -0.07 0.41 16 10 C 0.20 9.81 5.53 86.38 0.48 10.29 16 11 N -0.72 -29.24 5.44 -478.55 -2.60 -31.84 16 12 C 0.72 29.74 8.56 179.06 1.53 31.28 16 13 O -0.64 -32.65 16.57 -4.00 -0.07 -32.71 16 14 N -0.64 -19.91 3.32 -825.91 -2.74 -22.65 16 15 C 0.12 2.64 6.68 86.54 0.58 3.22 16 16 C -0.15 -2.43 6.85 -9.89 -0.07 -2.49 16 17 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 18 C -0.10 -1.57 5.60 -10.79 -0.06 -1.63 16 19 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 20 C 0.11 1.17 7.32 71.98 0.53 1.70 16 21 O -0.59 -7.78 13.66 -148.98 -2.04 -9.82 16 22 C -0.17 -3.14 6.74 -9.89 -0.07 -3.20 16 23 H 0.13 2.12 8.12 -2.38 -0.02 2.10 16 24 C 0.14 3.75 6.87 86.53 0.59 4.34 16 25 C -0.17 -7.89 9.88 30.60 0.30 -7.59 16 26 C -0.17 -6.63 9.78 30.60 0.30 -6.33 16 27 H 0.26 14.51 8.32 -92.71 -0.77 13.74 16 28 H 0.03 1.33 7.87 -2.39 -0.02 1.31 16 29 H 0.03 1.92 7.26 -2.39 -0.02 1.90 16 30 H 0.40 14.30 6.87 -92.70 -0.64 13.67 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.84 6.96 -2.39 -0.02 1.82 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.52 7.94 -2.38 -0.02 0.50 16 35 H 0.40 1.36 9.12 -74.06 -0.68 0.69 16 36 H 0.07 2.06 7.85 -2.39 -0.02 2.04 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.07 3.03 8.06 -2.39 -0.02 3.01 16 39 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 41 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -71.57 342.94 -0.70 -72.27 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.27 Total: 26.51 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 4.71 Total: 5.54 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -5.07 Total: -106.62 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -2.10 Total: -42.53 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.57 -0.70 -72.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589926472.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.663 kcal (2) G-P(sol) polarization free energy of solvation -71.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds