Wall clock time and date at job start Tue Mar 31 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47265 * 267.32081 * 3 2 1 5 5 H 1.48501 * 109.47025 * 27.32839 * 3 2 1 6 6 H 1.48506 * 109.46794 * 147.32302 * 3 2 1 7 7 C 1.37878 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00198 * 353.51463 * 7 2 1 9 9 C 1.50699 * 119.99743 * 173.52131 * 7 2 1 10 10 O 1.42907 * 110.88962 * 328.70159 * 9 7 2 11 11 C 1.55157 * 111.04141 * 92.60844 * 9 7 2 12 12 C 1.54328 * 103.02327 * 153.39407 * 11 9 7 13 13 N 1.47021 * 107.26666 * 338.14076 * 12 11 9 14 14 C 1.34776 * 125.64873 * 178.85074 * 13 12 11 15 15 O 1.21589 * 120.00132 * 179.69053 * 14 13 12 16 16 N 1.34773 * 120.00178 * 359.69126 * 14 13 12 17 17 C 1.46496 * 120.00161 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.30527 * 124.44849 * 95.03248 * 18 17 16 20 20 C 1.51102 * 111.10494 * 179.97438 * 19 18 17 21 21 C 1.54635 * 104.72519 * 16.43260 * 20 19 18 22 22 C 1.51103 * 124.44806 * 275.00469 * 18 17 16 23 23 C 1.47423 * 108.70077 * 358.58399 * 13 12 11 24 24 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 25 25 H 0.96698 * 113.99575 * 292.32576 * 10 9 7 26 26 H 1.09005 * 110.72160 * 271.95653 * 11 9 7 27 27 H 1.09000 * 110.71573 * 35.22184 * 11 9 7 28 28 H 1.09003 * 109.99154 * 218.66499 * 12 11 9 29 29 H 1.08996 * 109.77997 * 97.50097 * 12 11 9 30 30 H 0.97000 * 119.99678 * 0.02562 * 16 14 13 31 31 H 1.09003 * 109.46919 * 60.00367 * 17 16 14 32 32 H 1.08991 * 109.47885 * 300.00368 * 17 16 14 33 33 H 1.08002 * 124.44674 * 0.23845 * 19 18 17 34 34 H 1.09006 * 110.38666 * 135.24500 * 20 19 18 35 35 H 1.08997 * 110.38595 * 257.50521 * 20 19 18 36 36 H 1.08999 * 111.03682 * 93.39990 * 21 20 19 37 37 H 1.08997 * 111.03497 * 217.29372 * 21 20 19 38 38 H 1.09000 * 110.39007 * 44.77058 * 22 18 17 39 39 H 1.08999 * 110.48480 * 282.44490 * 22 18 17 40 40 H 1.09005 * 110.36705 * 143.19450 * 23 13 12 41 41 H 1.09001 * 110.37128 * 265.40322 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5533 2.0138 -1.3985 5 1 1.4194 2.6683 0.6428 6 1 3.5172 1.4572 0.7559 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5043 -1.1981 -0.1478 10 8 3.9404 -0.0993 -0.9506 11 6 4.2002 -1.1845 1.2389 12 6 5.5566 -1.8632 0.9539 13 7 5.3952 -2.6653 -0.2676 14 6 6.3602 -3.3952 -0.8613 15 8 6.1110 -4.0269 -1.8699 16 7 7.6014 -3.4249 -0.3371 17 6 8.6502 -4.2187 -0.9821 18 6 9.9334 -4.0830 -0.2036 19 6 10.3321 -4.9208 0.7145 20 6 11.6588 -4.4958 1.2998 21 6 11.8179 -3.0162 0.8794 22 6 10.9277 -2.9596 -0.3837 23 6 4.0012 -2.5441 -0.7318 24 1 -0.4850 0.8401 0.0004 25 1 3.6750 -0.1604 -1.8785 26 1 4.3438 -0.1620 1.5883 27 1 3.6278 -1.7638 1.9633 28 1 5.8327 -2.5089 1.7876 29 1 6.3238 -1.1043 0.8004 30 1 7.8001 -2.9212 0.4678 31 1 8.8029 -3.8603 -2.0001 32 1 8.3498 -5.2661 -1.0069 33 1 9.7874 -5.8042 1.0134 34 1 11.6396 -4.5819 2.3862 35 1 12.4669 -5.0989 0.8860 36 1 11.4419 -2.3470 1.6533 37 1 12.8559 -2.7875 0.6380 38 1 10.4116 -2.0013 -0.4420 39 1 11.5282 -3.1216 -1.2788 40 1 3.9647 -2.5216 -1.8210 41 1 3.4010 -3.3700 -0.3499 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596879810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:29 Heat of formation + Delta-G solvation = -59.978624 kcal Electronic energy + Delta-G solvation = -22169.946220 eV Core-core repulsion = 18856.989620 eV Total energy + Delta-G solvation = -3312.956599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99205 -38.95362 -37.69737 -34.71117 -34.45099 -32.36818 -30.76427 -29.68938 -28.66955 -28.26155 -25.77326 -24.35591 -22.47513 -21.18656 -19.86982 -19.76844 -18.63425 -17.71272 -17.36168 -16.16111 -15.73636 -15.60453 -15.33509 -15.04515 -14.68348 -14.23833 -13.89429 -13.58386 -13.13593 -13.03189 -12.67912 -12.41051 -12.15266 -11.98071 -11.82926 -11.64328 -11.56911 -11.51451 -11.38807 -11.32294 -11.02001 -10.49966 -10.38330 -10.20216 -9.89137 -9.23925 -9.08223 -8.98356 -8.66343 -8.52273 -7.98376 -6.19101 -4.31114 1.72191 3.10759 3.46014 3.52101 3.53123 3.69144 4.25309 4.28714 4.34695 4.49979 4.71656 4.81489 5.02045 5.08319 5.14896 5.25324 5.34735 5.41009 5.45480 5.51008 5.58005 5.64127 5.68197 5.73675 5.79562 5.88317 5.90342 6.09958 6.25081 6.50080 6.54188 6.55237 6.64213 6.67181 6.73125 7.05718 7.35443 7.49207 8.12836 8.29982 8.62689 8.81936 8.90612 9.42406 10.89777 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.003751 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.127260 B = 7462.332369 C = 7828.965506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.952 3.048 4 H -0.293 1.293 5 H -0.327 1.327 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.082 0.918 9 C 0.219 3.781 10 O -0.559 6.559 11 C -0.120 4.120 12 C 0.102 3.898 13 N -0.628 5.628 14 C 0.719 3.281 15 O -0.599 6.599 16 N -0.745 5.745 17 C 0.189 3.811 18 C -0.154 4.154 19 C -0.142 4.142 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.093 4.093 23 C 0.108 3.892 24 H 0.267 0.733 25 H 0.371 0.629 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.395 0.605 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.790 -5.555 3.337 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.131 4.131 3 Si 0.788 3.212 4 H -0.221 1.221 5 H -0.258 1.258 6 H -0.196 1.196 7 C -0.589 4.589 8 H 0.100 0.900 9 C 0.179 3.821 10 O -0.367 6.367 11 C -0.158 4.158 12 C -0.022 4.022 13 N -0.365 5.365 14 C 0.421 3.579 15 O -0.478 6.478 16 N -0.401 5.401 17 C 0.065 3.935 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.138 4.138 21 C -0.163 4.163 22 C -0.130 4.130 23 C -0.014 4.014 24 H 0.076 0.924 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.741 -5.804 3.099 22.714 hybrid contribution 0.201 0.803 -0.095 0.833 sum 21.942 -5.001 3.004 22.704 Atomic orbital electron populations 1.69970 1.06857 1.27819 1.47645 1.25118 0.94876 1.00532 0.92554 0.85633 0.77751 0.79928 0.77927 1.22071 1.25829 1.19604 1.21109 0.88405 0.95483 1.53922 0.90041 1.20251 0.93651 0.81170 0.87043 1.86105 1.80090 1.46553 1.23944 1.22947 0.92869 1.00849 0.99120 1.22043 1.00122 0.93693 0.86293 1.47704 1.11087 1.49213 1.28517 1.15465 0.79795 0.79957 0.82720 1.90889 1.81488 1.49083 1.26381 1.45099 1.08933 1.54155 1.31944 1.19679 0.82598 0.95802 0.95391 1.22078 0.96315 0.98386 0.98635 1.23305 0.96845 0.99303 0.96630 1.21373 0.95586 0.96107 1.00779 1.22453 0.99912 0.96412 0.97516 1.21294 0.95696 0.97542 0.98503 1.22986 0.78504 1.00199 0.99740 0.92401 0.78059 0.90196 0.89633 0.92793 0.92536 0.77089 0.91180 0.91220 0.85632 0.90983 0.90556 0.91002 0.90922 0.90968 0.90547 0.91219 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 2 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.95 23.20 24.93 -169.99 -4.24 18.96 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.33 -8.18 7.11 56.52 0.40 -7.78 16 6 H -0.27 -6.40 5.42 56.52 0.31 -6.09 16 7 C -0.55 -14.49 8.89 -34.44 -0.31 -14.80 16 8 H 0.08 2.33 8.00 -52.49 -0.42 1.91 16 9 C 0.22 4.81 0.70 -89.62 -0.06 4.74 16 10 O -0.56 -12.16 8.52 -35.23 -0.30 -12.46 16 11 C -0.12 -2.30 5.90 -24.89 -0.15 -2.44 16 12 C 0.10 1.64 6.15 -3.06 -0.02 1.62 16 13 N -0.63 -11.58 3.33 -176.23 -0.59 -12.17 16 14 C 0.72 13.22 8.49 -86.92 -0.74 12.49 16 15 O -0.60 -13.14 16.60 5.29 0.09 -13.06 16 16 N -0.74 -10.40 5.51 -66.42 -0.37 -10.77 16 17 C 0.19 2.29 6.10 -5.20 -0.03 2.26 16 18 C -0.15 -1.45 5.53 -100.74 -0.56 -2.01 16 19 C -0.14 -1.19 10.58 -35.70 -0.38 -1.57 16 20 C -0.10 -0.69 6.81 -26.83 -0.18 -0.88 16 21 C -0.13 -0.86 7.19 -25.01 -0.18 -1.04 16 22 C -0.09 -0.77 6.76 -26.83 -0.18 -0.95 16 23 C 0.11 2.23 6.07 -2.53 -0.02 2.21 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.37 7.30 8.98 45.56 0.41 7.71 16 26 H 0.08 1.57 6.66 -51.93 -0.35 1.22 16 27 H 0.09 1.61 8.03 -51.93 -0.42 1.19 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.40 4.79 7.45 -40.82 -0.30 4.49 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.88 8.12 -51.93 -0.42 0.45 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.47 8.02 -51.93 -0.42 1.06 16 41 H 0.07 1.46 7.99 -51.93 -0.41 1.05 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -32.10 329.99 -8.34 -40.44 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.79 Total: 7.90 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.90 Total: 1.59 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.18 Total: -48.35 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.21 Total: -25.51 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.24 Total: 18.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.10 -8.34 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596879810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.536 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds