Wall clock time and date at job start Tue Mar 31 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47265 * 267.32081 * 3 2 1 5 5 H 1.48501 * 109.47025 * 27.32839 * 3 2 1 6 6 H 1.48506 * 109.46794 * 147.32302 * 3 2 1 7 7 C 1.37878 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00198 * 353.51463 * 7 2 1 9 9 C 1.50699 * 119.99743 * 173.52131 * 7 2 1 10 10 O 1.42907 * 110.88962 * 328.70159 * 9 7 2 11 11 C 1.55157 * 111.04141 * 92.60844 * 9 7 2 12 12 C 1.54328 * 103.02327 * 153.39407 * 11 9 7 13 13 N 1.47021 * 107.26666 * 338.14076 * 12 11 9 14 14 C 1.34776 * 125.64873 * 178.85074 * 13 12 11 15 15 O 1.21589 * 120.00132 * 179.69053 * 14 13 12 16 16 N 1.34773 * 120.00178 * 359.69126 * 14 13 12 17 17 C 1.46496 * 120.00161 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.30527 * 124.44849 * 95.03248 * 18 17 16 20 20 C 1.51102 * 111.10494 * 179.97438 * 19 18 17 21 21 C 1.54635 * 104.72519 * 16.43260 * 20 19 18 22 22 C 1.51103 * 124.44806 * 275.00469 * 18 17 16 23 23 C 1.47423 * 108.70077 * 358.58399 * 13 12 11 24 24 H 0.97001 * 119.99901 * 359.97438 * 1 2 3 25 25 H 0.96698 * 113.99575 * 292.32576 * 10 9 7 26 26 H 1.09005 * 110.72160 * 271.95653 * 11 9 7 27 27 H 1.09000 * 110.71573 * 35.22184 * 11 9 7 28 28 H 1.09003 * 109.99154 * 218.66499 * 12 11 9 29 29 H 1.08996 * 109.77997 * 97.50097 * 12 11 9 30 30 H 0.97000 * 119.99678 * 0.02562 * 16 14 13 31 31 H 1.09003 * 109.46919 * 60.00367 * 17 16 14 32 32 H 1.08991 * 109.47885 * 300.00368 * 17 16 14 33 33 H 1.08002 * 124.44674 * 0.23845 * 19 18 17 34 34 H 1.09006 * 110.38666 * 135.24500 * 20 19 18 35 35 H 1.08997 * 110.38595 * 257.50521 * 20 19 18 36 36 H 1.08999 * 111.03682 * 93.39990 * 21 20 19 37 37 H 1.08997 * 111.03497 * 217.29372 * 21 20 19 38 38 H 1.09000 * 110.39007 * 44.77058 * 22 18 17 39 39 H 1.08999 * 110.48480 * 282.44490 * 22 18 17 40 40 H 1.09005 * 110.36705 * 143.19450 * 23 13 12 41 41 H 1.09001 * 110.37128 * 265.40322 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5533 2.0138 -1.3985 5 1 1.4194 2.6683 0.6428 6 1 3.5172 1.4572 0.7559 7 6 2.0045 -1.1941 -0.0005 8 1 1.4697 -2.1264 0.1047 9 6 3.5043 -1.1981 -0.1478 10 8 3.9404 -0.0993 -0.9506 11 6 4.2002 -1.1845 1.2389 12 6 5.5566 -1.8632 0.9539 13 7 5.3952 -2.6653 -0.2676 14 6 6.3602 -3.3952 -0.8613 15 8 6.1110 -4.0269 -1.8699 16 7 7.6014 -3.4249 -0.3371 17 6 8.6502 -4.2187 -0.9821 18 6 9.9334 -4.0830 -0.2036 19 6 10.3321 -4.9208 0.7145 20 6 11.6588 -4.4958 1.2998 21 6 11.8179 -3.0162 0.8794 22 6 10.9277 -2.9596 -0.3837 23 6 4.0012 -2.5441 -0.7318 24 1 -0.4850 0.8401 0.0004 25 1 3.6750 -0.1604 -1.8785 26 1 4.3438 -0.1620 1.5883 27 1 3.6278 -1.7638 1.9633 28 1 5.8327 -2.5089 1.7876 29 1 6.3238 -1.1043 0.8004 30 1 7.8001 -2.9212 0.4678 31 1 8.8029 -3.8603 -2.0001 32 1 8.3498 -5.2661 -1.0069 33 1 9.7874 -5.8042 1.0134 34 1 11.6396 -4.5819 2.3862 35 1 12.4669 -5.0989 0.8860 36 1 11.4419 -2.3470 1.6533 37 1 12.8559 -2.7875 0.6380 38 1 10.4116 -2.0013 -0.4420 39 1 11.5282 -3.1216 -1.2788 40 1 3.9647 -2.5216 -1.8210 41 1 3.4010 -3.3700 -0.3499 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596879810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:29 Heat of formation + Delta-G solvation = -83.313995 kcal Electronic energy + Delta-G solvation = -22170.958117 eV Core-core repulsion = 18856.989620 eV Total energy + Delta-G solvation = -3313.968497 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39465 -39.83189 -39.14438 -36.34472 -35.64504 -34.45277 -32.16045 -30.75090 -29.89594 -29.24927 -27.29881 -25.65674 -23.94546 -21.73311 -21.56974 -21.15792 -19.84882 -19.24759 -18.61468 -17.41040 -17.11600 -16.94286 -16.64179 -16.27068 -16.19473 -15.51902 -15.26224 -15.01448 -14.54205 -14.33476 -14.01615 -13.77536 -13.56282 -13.31978 -13.19512 -12.78425 -12.75206 -12.53016 -12.30572 -12.21886 -12.18654 -11.98163 -11.95183 -11.92284 -11.41733 -11.23309 -10.63669 -10.41538 -10.24890 -9.75620 -9.43518 -8.33325 -6.47143 0.94803 1.51999 1.54162 1.75110 1.83004 2.09431 2.46766 2.97802 3.11345 3.49612 3.57802 3.67145 3.83809 4.07338 4.17477 4.22678 4.26341 4.41237 4.42836 4.50216 4.59186 4.63166 4.82918 4.86179 4.90899 4.96239 5.03448 5.05086 5.16131 5.21397 5.22787 5.37652 5.38750 5.43918 5.53968 5.59134 5.90156 6.05560 6.08347 6.58861 6.89340 6.98810 7.30760 7.50514 8.79709 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.032135 B = 0.003751 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.127260 B = 7462.332369 C = 7828.965506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 1.011 2.989 4 H -0.287 1.287 5 H -0.337 1.337 6 H -0.254 1.254 7 C -0.548 4.548 8 H 0.044 0.956 9 C 0.217 3.783 10 O -0.559 6.559 11 C -0.118 4.118 12 C 0.108 3.892 13 N -0.631 5.631 14 C 0.715 3.285 15 O -0.640 6.640 16 N -0.725 5.725 17 C 0.190 3.810 18 C -0.169 4.169 19 C -0.130 4.130 20 C -0.101 4.101 21 C -0.122 4.122 22 C -0.093 4.093 23 C 0.117 3.883 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.408 0.592 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.184 -5.105 4.594 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.845 3.155 4 H -0.215 1.215 5 H -0.270 1.270 6 H -0.179 1.179 7 C -0.586 4.586 8 H 0.063 0.937 9 C 0.177 3.823 10 O -0.367 6.367 11 C -0.156 4.156 12 C -0.014 4.014 13 N -0.367 5.367 14 C 0.417 3.583 15 O -0.523 6.523 16 N -0.382 5.382 17 C 0.067 3.933 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.138 4.138 21 C -0.159 4.159 22 C -0.131 4.131 23 C -0.007 4.007 24 H 0.076 0.924 25 H 0.228 0.772 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.244 0.756 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.197 -5.358 4.386 26.131 hybrid contribution -0.861 0.531 -0.498 1.127 sum 24.336 -4.827 3.888 25.113 Atomic orbital electron populations 1.70089 1.08602 1.28571 1.50253 1.25881 0.95323 1.03793 0.92515 0.84661 0.76798 0.75850 0.78189 1.21474 1.26960 1.17877 1.21338 0.91005 0.93836 1.52425 0.93744 1.20128 0.91300 0.81970 0.88948 1.86063 1.79694 1.46318 1.24667 1.22859 0.94319 1.01514 0.96888 1.22128 0.98658 0.94352 0.86242 1.47624 1.10115 1.49720 1.29259 1.15636 0.80778 0.79581 0.82346 1.90860 1.82370 1.50749 1.28312 1.45006 1.07605 1.53654 1.31897 1.19712 0.83292 0.94927 0.95392 1.21910 0.95648 0.99925 0.99427 1.23554 0.97299 0.98644 0.95422 1.21428 0.94752 0.96195 1.01417 1.22468 1.00349 0.96435 0.96697 1.21310 0.95607 0.96628 0.99516 1.22636 0.80079 0.99056 0.98937 0.92399 0.77154 0.89965 0.89635 0.89401 0.90484 0.75611 0.92207 0.91960 0.85310 0.89864 0.89475 0.90791 0.89621 0.91624 0.90292 0.92374 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.74 13.96 21.45 0.30 -56.44 16 2 C 0.02 1.37 5.46 84.66 0.46 1.84 16 3 Si 1.01 47.34 24.93 68.60 1.71 49.05 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.34 -16.28 7.11 99.48 0.71 -15.58 16 6 H -0.25 -11.09 5.42 99.48 0.54 -10.55 16 7 C -0.55 -29.26 8.89 25.60 0.23 -29.03 16 8 H 0.04 2.65 8.00 -2.91 -0.02 2.62 16 9 C 0.22 9.32 0.70 -10.15 -0.01 9.32 16 10 O -0.56 -23.21 8.52 -148.98 -1.27 -24.47 16 11 C -0.12 -4.23 5.90 31.78 0.19 -4.04 16 12 C 0.11 3.11 6.15 86.73 0.53 3.65 16 13 N -0.63 -22.12 3.33 -829.75 -2.76 -24.88 16 14 C 0.71 25.35 8.49 179.06 1.52 26.87 16 15 O -0.64 -28.05 16.60 -4.00 -0.07 -28.12 16 16 N -0.73 -18.74 5.51 -482.31 -2.66 -21.40 16 17 C 0.19 4.35 6.10 85.63 0.52 4.87 16 18 C -0.17 -2.82 5.53 -15.87 -0.09 -2.91 16 19 C -0.13 -1.83 10.58 26.26 0.28 -1.55 16 20 C -0.10 -1.03 6.81 30.53 0.21 -0.83 16 21 C -0.12 -1.27 7.19 31.71 0.23 -1.04 16 22 C -0.09 -1.31 6.76 30.53 0.21 -1.11 16 23 C 0.12 4.79 6.07 86.86 0.53 5.31 16 24 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 25 H 0.38 14.39 8.98 -74.06 -0.67 13.73 16 26 H 0.08 2.94 6.66 -2.38 -0.02 2.93 16 27 H 0.09 3.06 8.03 -2.39 -0.02 3.04 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.41 8.53 7.45 -92.71 -0.69 7.84 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 33 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.06 2.49 8.02 -2.38 -0.02 2.47 16 41 H 0.06 2.47 7.99 -2.39 -0.02 2.45 16 Total: -1.00 -69.99 329.99 -0.42 -70.42 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.49 Total: 24.50 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 4.81 Total: 11.35 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -5.12 Total: -102.72 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -1.34 Total: -52.59 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.71 Total: 49.05 kcal Total: -69.99 -0.42 -70.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596879810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.896 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds