Wall clock time and date at job start Tue Mar 31 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00257 * 2 1 4 4 H 1.48503 * 109.46825 * 274.98776 * 3 2 1 5 5 H 1.48502 * 109.46898 * 34.98396 * 3 2 1 6 6 H 1.48497 * 109.47244 * 154.98956 * 3 2 1 7 7 C 1.37880 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 173.91181 * 7 2 1 9 9 C 1.50702 * 119.99776 * 354.18565 * 7 2 1 10 10 O 1.42902 * 110.64012 * 299.63352 * 9 7 2 11 11 C 1.55150 * 110.71940 * 176.49168 * 9 7 2 12 12 C 1.54915 * 101.58155 * 206.13740 * 11 9 7 13 13 N 1.47416 * 104.83222 * 37.00692 * 12 11 9 14 14 C 1.34787 * 125.64874 * 155.83799 * 13 12 11 15 15 O 1.21588 * 119.99684 * 180.02562 * 14 13 12 16 16 N 1.34772 * 119.99718 * 0.02562 * 14 13 12 17 17 C 1.46496 * 119.99823 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47271 * 179.97438 * 17 16 14 19 19 C 1.30530 * 124.44715 * 95.02477 * 18 17 16 20 20 C 1.51104 * 111.10601 * 179.97438 * 19 18 17 21 21 C 1.54638 * 104.72320 * 16.43908 * 20 19 18 22 22 C 1.51104 * 124.44952 * 274.73176 * 18 17 16 23 23 C 1.47317 * 108.73627 * 335.71803 * 13 12 11 24 24 H 0.96998 * 119.99682 * 359.97438 * 1 2 3 25 25 H 0.96697 * 113.99890 * 59.30242 * 10 9 7 26 26 H 1.09004 * 111.00269 * 324.20733 * 11 9 7 27 27 H 1.09001 * 111.00925 * 88.06118 * 11 9 7 28 28 H 1.09003 * 110.36468 * 155.84808 * 12 11 9 29 29 H 1.09002 * 110.36175 * 278.16688 * 12 11 9 30 30 H 0.97003 * 120.00034 * 0.02562 * 16 14 13 31 31 H 1.08993 * 109.47285 * 300.00540 * 17 16 14 32 32 H 1.09008 * 109.46917 * 60.00766 * 17 16 14 33 33 H 1.07995 * 124.44482 * 359.96183 * 19 18 17 34 34 H 1.09001 * 110.38654 * 135.24723 * 20 19 18 35 35 H 1.08995 * 110.38783 * 257.51659 * 20 19 18 36 36 H 1.09002 * 111.03925 * 93.39655 * 21 20 19 37 37 H 1.08997 * 111.03789 * 217.29582 * 21 20 19 38 38 H 1.09009 * 110.38185 * 282.39040 * 22 18 17 39 39 H 1.08998 * 110.39099 * 44.76984 * 22 18 17 40 40 H 1.08998 * 110.06326 * 241.86930 * 23 13 12 41 41 H 1.09005 * 109.85312 * 120.61572 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5033 2.6199 0.8027 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1941 0.0005 8 1 3.0799 -1.1968 -0.0987 9 6 1.2568 -2.4957 0.1333 10 8 0.5377 -2.5399 1.3674 11 6 2.2278 -3.7006 0.0203 12 6 1.2833 -4.8136 -0.4982 13 7 0.3658 -4.1279 -1.4262 14 6 -0.3067 -4.7098 -2.4391 15 8 -1.0394 -4.0434 -3.1444 16 7 -0.1671 -6.0302 -2.6700 17 6 -0.8984 -6.6628 -3.7705 18 6 -0.5692 -8.1327 -3.8131 19 6 -1.2847 -9.0663 -3.2470 20 6 -0.6798 -10.4314 -3.4793 21 6 0.7695 -10.1464 -3.9371 22 6 0.6289 -8.7201 -4.5221 23 6 0.3029 -2.7019 -1.0621 24 1 -0.4849 0.8401 0.0004 25 1 -0.1098 -1.8293 1.4710 26 1 3.0220 -3.4963 -0.6978 27 1 2.6416 -3.9617 0.9943 28 1 1.8528 -5.5796 -1.0245 29 1 0.7268 -5.2546 0.3289 30 1 0.4172 -6.5619 -2.1070 31 1 -1.9697 -6.5343 -3.6161 32 1 -0.6089 -6.1986 -4.7133 33 1 -2.1899 -8.8866 -2.6862 34 1 -0.6794 -11.0088 -2.5547 35 1 -1.2282 -10.9623 -4.2574 36 1 1.4569 -10.1603 -3.0913 37 1 1.0833 -10.8532 -4.7052 38 1 0.4505 -8.7637 -5.5966 39 1 1.5222 -8.1333 -4.3080 40 1 -0.7139 -2.4336 -0.7755 41 1 0.6264 -2.0901 -1.9043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596879811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:32 Heat of formation + Delta-G solvation = -65.025677 kcal Electronic energy + Delta-G solvation = -22135.430620 eV Core-core repulsion = 18822.255164 eV Total energy + Delta-G solvation = -3313.175456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73470 -38.79265 -37.31328 -34.27372 -34.20881 -32.21380 -30.51030 -29.49686 -28.56584 -27.71254 -25.60786 -24.27247 -22.46926 -21.11797 -19.67884 -19.50348 -18.41051 -17.45144 -17.04565 -16.05783 -15.69714 -15.32836 -15.10453 -14.92921 -14.34874 -13.88475 -13.72813 -13.02628 -12.98194 -12.83223 -12.81130 -12.20033 -12.04104 -11.77564 -11.65621 -11.51460 -11.37207 -11.29047 -11.24804 -11.02506 -10.78190 -10.63627 -10.49162 -10.16110 -9.65217 -9.26780 -8.98821 -8.79174 -8.69419 -8.28989 -7.71204 -6.26093 -4.34750 1.82700 3.22141 3.30102 3.32684 3.36591 3.78494 4.28589 4.33652 4.36851 4.56235 4.78121 4.90265 5.00938 5.16408 5.34987 5.40268 5.47970 5.53582 5.57834 5.69868 5.74117 5.76393 5.80912 5.84630 5.95694 6.03042 6.13517 6.35006 6.53335 6.66454 6.74649 6.80689 6.93480 7.03329 7.32063 7.34609 7.69392 7.75170 8.05116 8.57357 8.69257 9.17106 9.30552 9.37355 10.81052 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.003537 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.388732 B = 7914.542860 C = 8112.020897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.115 4.115 12 C 0.104 3.896 13 N -0.631 5.631 14 C 0.714 3.286 15 O -0.598 6.598 16 N -0.748 5.748 17 C 0.189 3.811 18 C -0.152 4.152 19 C -0.144 4.144 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.093 4.093 23 C 0.125 3.875 24 H 0.270 0.730 25 H 0.381 0.619 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.393 0.607 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -18.014 -5.145 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.206 3.794 10 O -0.393 6.393 11 C -0.153 4.153 12 C -0.020 4.020 13 N -0.369 5.369 14 C 0.416 3.584 15 O -0.477 6.477 16 N -0.405 5.405 17 C 0.065 3.935 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.138 4.138 21 C -0.163 4.163 22 C -0.130 4.130 23 C 0.003 3.997 24 H 0.080 0.920 25 H 0.231 0.769 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.227 0.773 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.647 -17.922 -5.644 18.801 hybrid contribution 0.221 1.164 0.100 1.189 sum 0.868 -16.758 -5.544 17.673 Atomic orbital electron populations 1.69770 1.05948 1.27853 1.49412 1.25084 0.95043 0.99778 0.93423 0.86402 0.79909 0.82557 0.78123 1.20539 1.20931 1.19659 1.21497 0.94118 0.90247 1.51848 0.91540 1.19510 0.87063 0.92130 0.80660 1.86107 1.57539 1.55565 1.40076 1.22718 0.97167 0.94742 1.00711 1.22218 0.91686 0.95712 0.92334 1.48068 1.46335 1.11997 1.30458 1.15536 0.80734 0.81244 0.80851 1.90885 1.43100 1.63036 1.50649 1.45134 1.51735 1.07766 1.35879 1.19658 0.96314 0.87274 0.90252 1.22100 0.98344 0.94590 1.00222 1.23295 0.99696 0.94595 0.98709 1.21367 0.95462 0.95581 1.01396 1.22482 0.96648 0.96416 1.00723 1.21327 0.96621 0.95392 0.99667 1.22913 1.01392 0.76020 0.99334 0.92042 0.76927 0.90533 0.90624 0.92704 0.92096 0.77285 0.91319 0.91295 0.85646 0.91037 0.90622 0.90993 0.91001 0.90552 0.90974 0.91833 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 10.98 55.43 0.61 -23.35 16 2 C 0.07 1.84 5.25 -17.82 -0.09 1.75 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.13 8.11 -34.44 -0.28 -14.41 16 8 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 9 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 10 O -0.58 -14.64 13.08 -35.23 -0.46 -15.10 16 11 C -0.12 -2.29 6.23 -24.58 -0.15 -2.45 16 12 C 0.10 1.84 6.57 -2.53 -0.02 1.82 16 13 N -0.63 -13.38 3.33 -176.00 -0.59 -13.97 16 14 C 0.71 14.91 8.49 -86.91 -0.74 14.17 16 15 O -0.60 -14.86 16.67 5.29 0.09 -14.77 16 16 N -0.75 -11.67 5.51 -66.42 -0.37 -12.03 16 17 C 0.19 2.55 6.10 -5.20 -0.03 2.52 16 18 C -0.15 -1.59 5.52 -100.74 -0.56 -2.14 16 19 C -0.14 -1.34 10.58 -35.70 -0.38 -1.72 16 20 C -0.10 -0.76 6.81 -26.82 -0.18 -0.94 16 21 C -0.13 -0.92 7.20 -24.92 -0.18 -1.10 16 22 C -0.09 -0.82 6.77 -26.74 -0.18 -1.00 16 23 C 0.13 3.11 5.22 -2.90 -0.02 3.10 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 25 H 0.38 9.77 7.53 45.56 0.34 10.11 16 26 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.05 0.78 7.30 -51.93 -0.38 0.40 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.39 5.28 6.94 -40.82 -0.28 4.99 16 31 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 32 H 0.07 0.98 8.14 -51.92 -0.42 0.55 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 1.73 7.90 -51.93 -0.41 1.32 16 41 H 0.06 1.77 7.81 -51.93 -0.41 1.37 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -30.25 335.21 -9.31 -39.56 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -5.75 Total: 13.60 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -2.88 Total: 5.51 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.34 Total: -49.35 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.37 Total: -29.87 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.25 -9.31 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596879811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.466 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds