Wall clock time and date at job start Tue Mar 31 2020 02:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00257 * 2 1 4 4 H 1.48503 * 109.46825 * 274.98776 * 3 2 1 5 5 H 1.48502 * 109.46898 * 34.98396 * 3 2 1 6 6 H 1.48497 * 109.47244 * 154.98956 * 3 2 1 7 7 C 1.37880 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 173.91181 * 7 2 1 9 9 C 1.50702 * 119.99776 * 354.18565 * 7 2 1 10 10 O 1.42902 * 110.64012 * 299.63352 * 9 7 2 11 11 C 1.55150 * 110.71940 * 176.49168 * 9 7 2 12 12 C 1.54915 * 101.58155 * 206.13740 * 11 9 7 13 13 N 1.47416 * 104.83222 * 37.00692 * 12 11 9 14 14 C 1.34787 * 125.64874 * 155.83799 * 13 12 11 15 15 O 1.21588 * 119.99684 * 180.02562 * 14 13 12 16 16 N 1.34772 * 119.99718 * 0.02562 * 14 13 12 17 17 C 1.46496 * 119.99823 * 179.97438 * 16 14 13 18 18 C 1.50698 * 109.47271 * 179.97438 * 17 16 14 19 19 C 1.30530 * 124.44715 * 95.02477 * 18 17 16 20 20 C 1.51104 * 111.10601 * 179.97438 * 19 18 17 21 21 C 1.54638 * 104.72320 * 16.43908 * 20 19 18 22 22 C 1.51104 * 124.44952 * 274.73176 * 18 17 16 23 23 C 1.47317 * 108.73627 * 335.71803 * 13 12 11 24 24 H 0.96998 * 119.99682 * 359.97438 * 1 2 3 25 25 H 0.96697 * 113.99890 * 59.30242 * 10 9 7 26 26 H 1.09004 * 111.00269 * 324.20733 * 11 9 7 27 27 H 1.09001 * 111.00925 * 88.06118 * 11 9 7 28 28 H 1.09003 * 110.36468 * 155.84808 * 12 11 9 29 29 H 1.09002 * 110.36175 * 278.16688 * 12 11 9 30 30 H 0.97003 * 120.00034 * 0.02562 * 16 14 13 31 31 H 1.08993 * 109.47285 * 300.00540 * 17 16 14 32 32 H 1.09008 * 109.46917 * 60.00766 * 17 16 14 33 33 H 1.07995 * 124.44482 * 359.96183 * 19 18 17 34 34 H 1.09001 * 110.38654 * 135.24723 * 20 19 18 35 35 H 1.08995 * 110.38783 * 257.51659 * 20 19 18 36 36 H 1.09002 * 111.03925 * 93.39655 * 21 20 19 37 37 H 1.08997 * 111.03789 * 217.29582 * 21 20 19 38 38 H 1.09009 * 110.38185 * 282.39040 * 22 18 17 39 39 H 1.08998 * 110.39099 * 44.76984 * 22 18 17 40 40 H 1.08998 * 110.06326 * 241.86930 * 23 13 12 41 41 H 1.09005 * 109.85312 * 120.61572 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.3913 2.1072 -1.3948 5 1 1.5033 2.6199 0.8027 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1941 0.0005 8 1 3.0799 -1.1968 -0.0987 9 6 1.2568 -2.4957 0.1333 10 8 0.5377 -2.5399 1.3674 11 6 2.2278 -3.7006 0.0203 12 6 1.2833 -4.8136 -0.4982 13 7 0.3658 -4.1279 -1.4262 14 6 -0.3067 -4.7098 -2.4391 15 8 -1.0394 -4.0434 -3.1444 16 7 -0.1671 -6.0302 -2.6700 17 6 -0.8984 -6.6628 -3.7705 18 6 -0.5692 -8.1327 -3.8131 19 6 -1.2847 -9.0663 -3.2470 20 6 -0.6798 -10.4314 -3.4793 21 6 0.7695 -10.1464 -3.9371 22 6 0.6289 -8.7201 -4.5221 23 6 0.3029 -2.7019 -1.0621 24 1 -0.4849 0.8401 0.0004 25 1 -0.1098 -1.8293 1.4710 26 1 3.0220 -3.4963 -0.6978 27 1 2.6416 -3.9617 0.9943 28 1 1.8528 -5.5796 -1.0245 29 1 0.7268 -5.2546 0.3289 30 1 0.4172 -6.5619 -2.1070 31 1 -1.9697 -6.5343 -3.6161 32 1 -0.6089 -6.1986 -4.7133 33 1 -2.1899 -8.8866 -2.6862 34 1 -0.6794 -11.0088 -2.5547 35 1 -1.2282 -10.9623 -4.2574 36 1 1.4569 -10.1603 -3.0913 37 1 1.0833 -10.8532 -4.7052 38 1 0.4505 -8.7637 -5.5966 39 1 1.5222 -8.1333 -4.3080 40 1 -0.7139 -2.4336 -0.7755 41 1 0.6264 -2.0901 -1.9043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596879811.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:31 Heat of formation + Delta-G solvation = -86.097025 kcal Electronic energy + Delta-G solvation = -22136.344342 eV Core-core repulsion = 18822.255164 eV Total energy + Delta-G solvation = -3314.089178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30011 -39.73316 -38.98308 -36.08620 -35.61198 -34.23568 -31.98123 -30.70240 -29.53316 -29.21180 -27.20267 -25.68636 -24.06984 -21.72231 -21.45741 -21.09685 -19.61043 -19.07188 -18.57207 -17.52235 -17.00127 -16.79191 -16.41115 -16.22096 -16.04870 -15.29999 -15.09734 -14.77942 -14.62737 -14.38490 -13.81217 -13.55171 -13.54979 -13.31622 -12.85335 -12.77237 -12.54090 -12.53046 -12.32306 -12.28533 -12.18669 -12.09985 -11.96110 -11.90904 -11.37629 -11.13932 -10.69134 -10.29848 -10.26525 -9.75092 -9.40776 -8.25896 -6.42045 0.95762 1.41314 1.43679 1.54258 1.88020 2.11827 2.38488 3.00145 3.14549 3.57922 3.67831 3.79120 4.05520 4.14529 4.20527 4.24719 4.37492 4.41574 4.50597 4.57981 4.63669 4.73212 4.87009 4.92146 5.04099 5.05994 5.06608 5.13061 5.22476 5.24885 5.36535 5.40189 5.45255 5.50055 5.60036 5.74414 5.90033 6.02471 6.16709 6.64804 7.04506 7.26667 7.32821 7.54049 8.79719 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.003537 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.388732 B = 7914.542860 C = 8112.020897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.585 6.585 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.637 5.637 14 C 0.709 3.291 15 O -0.646 6.646 16 N -0.724 5.724 17 C 0.189 3.811 18 C -0.168 4.168 19 C -0.131 4.131 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.093 4.093 23 C 0.144 3.856 24 H 0.269 0.731 25 H 0.374 0.626 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.408 0.592 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -20.448 -4.965 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.597 4.597 8 H 0.086 0.914 9 C 0.192 3.808 10 O -0.393 6.393 11 C -0.147 4.147 12 C -0.014 4.014 13 N -0.373 5.373 14 C 0.411 3.589 15 O -0.529 6.529 16 N -0.381 5.381 17 C 0.066 3.934 18 C -0.169 4.169 19 C -0.151 4.151 20 C -0.137 4.137 21 C -0.158 4.158 22 C -0.130 4.130 23 C 0.020 3.980 24 H 0.079 0.921 25 H 0.223 0.777 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.244 0.756 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.162 -20.433 -5.448 21.257 hybrid contribution -0.302 1.870 0.023 1.895 sum 1.860 -18.562 -5.426 19.428 Atomic orbital electron populations 1.69886 1.07145 1.28424 1.49931 1.25843 0.95781 1.02916 0.93111 0.85449 0.78978 0.78761 0.77875 1.20666 1.20625 1.18794 1.21844 0.94414 0.91482 1.51934 0.91365 1.19712 0.87553 0.93666 0.79840 1.86097 1.57422 1.55201 1.40547 1.22717 0.96734 0.93250 1.02031 1.22393 0.90975 0.95605 0.92396 1.48008 1.47217 1.10879 1.31237 1.15781 0.80251 0.82606 0.80313 1.90845 1.45115 1.64613 1.52282 1.44986 1.51254 1.05741 1.36117 1.19712 0.95431 0.89361 0.88923 1.21913 1.00116 0.92575 1.02255 1.23561 0.99063 0.95540 0.96895 1.21425 0.95492 0.94369 1.02417 1.22497 0.96604 0.95464 1.01228 1.21349 0.95505 0.96293 0.99838 1.22402 0.99281 0.77986 0.98296 0.92136 0.77737 0.89840 0.88946 0.88217 0.91121 0.75550 0.92397 0.92280 0.85589 0.89810 0.89434 0.90608 0.89488 0.90225 0.91457 0.95428 0.95338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.67 10.98 21.45 0.24 -50.44 16 2 C 0.02 1.30 5.25 84.65 0.44 1.74 16 3 Si 0.96 42.40 29.54 68.60 2.03 44.42 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.56 -29.52 8.11 25.60 0.21 -29.32 16 8 H 0.07 3.49 7.78 -2.91 -0.02 3.47 16 9 C 0.23 11.37 0.85 -10.35 -0.01 11.36 16 10 O -0.59 -29.59 13.08 -148.98 -1.95 -31.54 16 11 C -0.11 -4.15 6.23 31.99 0.20 -3.95 16 12 C 0.11 3.56 6.57 86.86 0.57 4.13 16 13 N -0.64 -26.95 3.33 -828.99 -2.76 -29.72 16 14 C 0.71 29.77 8.49 179.05 1.52 31.29 16 15 O -0.65 -33.28 16.67 -3.99 -0.07 -33.35 16 16 N -0.72 -21.81 5.51 -482.30 -2.66 -24.46 16 17 C 0.19 5.02 6.10 85.63 0.52 5.54 16 18 C -0.17 -3.21 5.52 -15.88 -0.09 -3.29 16 19 C -0.13 -2.14 10.58 26.26 0.28 -1.86 16 20 C -0.10 -1.16 6.81 30.53 0.21 -0.95 16 21 C -0.12 -1.36 7.20 31.77 0.23 -1.13 16 22 C -0.09 -1.43 6.77 30.59 0.21 -1.22 16 23 C 0.14 7.41 5.22 86.67 0.45 7.87 16 24 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.37 19.78 7.53 -74.06 -0.56 19.23 16 26 H 0.08 3.04 8.04 -2.38 -0.02 3.02 16 27 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.10 2.43 7.30 -2.39 -0.02 2.41 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.41 9.88 6.94 -92.71 -0.64 9.24 16 31 H 0.06 1.66 8.12 -2.39 -0.02 1.64 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.03 1.58 7.90 -2.39 -0.02 1.56 16 41 H 0.03 1.63 7.81 -2.38 -0.02 1.61 16 Total: -1.00 -67.65 335.21 -0.60 -68.25 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -0.17 Total: 36.62 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.74 Total: 20.21 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -5.18 Total: -104.62 kcal Atomic # 8 Polarization: -62.87 SS G_CDS: -2.01 Total: -64.89 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -67.65 -0.60 -68.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596879811.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.847 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds