Wall clock time and date at job start Tue Mar 31 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47417 * 240.00257 * 3 2 1 5 5 H 1.48493 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47169 * 120.00243 * 3 2 1 7 7 C 1.38951 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99628 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00362 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99701 * 180.27613 * 10 9 7 13 13 H 1.09008 * 109.47120 * 59.72940 * 12 10 9 14 14 C 1.52998 * 109.47364 * 299.73105 * 12 10 9 15 15 C 1.52999 * 109.47118 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.47482 * 59.99589 * 15 14 12 17 17 C 1.52998 * 109.47279 * 300.00312 * 16 15 14 18 18 C 1.52999 * 109.47118 * 59.99465 * 17 16 15 19 19 H 1.09005 * 109.47292 * 179.97438 * 18 17 16 20 20 N 1.46496 * 109.47037 * 60.00372 * 18 17 16 21 21 C 1.46770 * 124.35097 * 119.52095 * 20 18 17 22 22 C 1.54660 * 105.38332 * 162.85354 * 21 20 18 23 23 C 1.54635 * 101.68247 * 25.76772 * 22 21 20 24 24 C 1.34420 * 124.35138 * 299.81825 * 20 18 17 25 25 O 1.21286 * 124.93921 * 0.39496 * 24 20 18 26 26 H 0.96997 * 119.99802 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00226 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46562 * 299.99463 * 14 12 10 29 29 H 1.08999 * 109.47038 * 59.99770 * 14 12 10 30 30 H 1.09008 * 109.47187 * 299.99725 * 15 14 12 31 31 H 1.08999 * 109.47094 * 179.97438 * 15 14 12 32 32 H 1.08994 * 109.47363 * 180.02562 * 16 15 14 33 33 H 1.09008 * 109.46798 * 59.99898 * 16 15 14 34 34 H 1.09008 * 109.46867 * 300.00100 * 17 16 15 35 35 H 1.08999 * 109.47501 * 180.02562 * 17 16 15 36 36 H 1.08991 * 110.24715 * 281.98682 * 21 20 18 37 37 H 1.09000 * 110.23999 * 43.98941 * 21 20 18 38 38 H 1.09005 * 111.19465 * 267.59651 * 22 21 20 39 39 H 1.08994 * 110.85381 * 143.79244 * 22 21 20 40 40 H 1.08998 * 110.48443 * 216.30527 * 23 22 21 41 41 H 1.09001 * 110.48378 * 93.66747 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0068 13 1 0.6170 -4.9164 -0.8972 14 6 0.3638 -4.9500 1.2419 15 6 -0.4007 -6.2752 1.2358 16 6 0.5939 -7.4379 1.2305 17 6 1.4737 -7.3508 -0.0182 18 6 2.2382 -6.0256 -0.0121 19 1 2.8653 -5.9637 -0.9015 20 7 3.0803 -5.9531 1.1845 21 6 4.5424 -5.8280 1.1619 22 6 4.9356 -5.3527 2.5802 23 6 3.7581 -5.8882 3.4274 24 6 2.6136 -5.9985 2.4443 25 8 1.4449 -6.1113 2.7485 26 1 -0.4850 0.8400 0.0004 27 1 0.3533 -2.3906 -0.0005 28 1 0.9905 -4.8966 2.1321 29 1 -0.3444 -4.1215 1.2458 30 1 -1.0273 -6.3292 0.3454 31 1 -1.0271 -6.3374 2.1256 32 1 0.0493 -8.3819 1.2257 33 1 1.2205 -7.3839 2.1209 34 1 0.8471 -7.4047 -0.9085 35 1 2.1819 -8.1793 -0.0222 36 1 5.0003 -6.7927 0.9440 37 1 4.8462 -5.0893 0.4201 38 1 4.9894 -4.2651 2.6305 39 1 5.8776 -5.8028 2.8930 40 1 3.5107 -5.1861 4.2236 41 1 4.0005 -6.8667 3.8421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597031139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:30 Heat of formation + Delta-G solvation = 7.448453 kcal Electronic energy + Delta-G solvation = -24091.999320 eV Core-core repulsion = 20781.966578 eV Total energy + Delta-G solvation = -3310.032742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49998 -38.16951 -36.83622 -36.02693 -33.86466 -31.81518 -31.30064 -30.26087 -28.82430 -27.17735 -25.07955 -22.78855 -22.46066 -21.81274 -20.12051 -19.27690 -17.95373 -17.56511 -17.13850 -16.49075 -15.73214 -15.68150 -14.69108 -14.59091 -14.16788 -13.85431 -13.45665 -13.34706 -13.04436 -12.84738 -12.59698 -12.16689 -11.97481 -11.86309 -11.67928 -11.48560 -11.32454 -11.20048 -11.06829 -10.93024 -10.43224 -10.29118 -10.20597 -9.99014 -9.63970 -9.54840 -9.42388 -8.39412 -8.17782 -7.91337 -7.54897 -6.37220 -3.77981 2.76463 3.20494 3.26268 3.29957 3.43878 3.99822 4.19423 4.63240 4.77849 4.93413 5.08992 5.15004 5.23144 5.32875 5.40929 5.48853 5.66446 5.72535 5.78803 5.85289 5.94402 5.98605 5.99998 6.02685 6.09332 6.16655 6.22023 6.38030 6.42912 6.45516 6.69136 6.82216 6.85942 6.94543 7.19650 7.38569 7.57453 7.60304 8.09892 8.53529 8.66637 9.21608 9.61842 10.13019 10.80509 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.006242 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.572374 B = 4484.493422 C = 5117.744917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.101 0.899 9 N -0.560 5.560 10 C 0.451 3.549 11 O -0.596 6.596 12 C -0.110 4.110 13 H 0.079 0.921 14 C -0.159 4.159 15 C -0.083 4.083 16 C -0.170 4.170 17 C -0.126 4.126 18 C 0.184 3.816 19 H 0.087 0.913 20 N -0.575 5.575 21 C 0.108 3.892 22 C -0.129 4.129 23 C -0.152 4.152 24 C 0.472 3.528 25 O -0.472 6.472 26 H 0.271 0.729 27 H 0.392 0.608 28 H 0.143 0.857 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.141 0.859 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 -13.368 3.452 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.429 4.429 8 H 0.119 0.881 9 N -0.195 5.195 10 C 0.237 3.763 11 O -0.482 6.482 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.195 4.195 15 C -0.120 4.120 16 C -0.206 4.206 17 C -0.164 4.164 18 C 0.082 3.918 19 H 0.105 0.895 20 N -0.305 5.305 21 C -0.015 4.015 22 C -0.167 4.167 23 C -0.192 4.192 24 C 0.265 3.735 25 O -0.355 6.355 26 H 0.081 0.919 27 H 0.226 0.774 28 H 0.158 0.842 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.156 0.844 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.322 -13.234 3.488 14.685 hybrid contribution -0.431 1.015 -0.433 1.184 sum 4.892 -12.219 3.055 13.512 Atomic orbital electron populations 1.69614 1.05929 1.28154 1.50491 1.25258 0.95591 0.99661 0.97468 0.85951 0.78771 0.80725 0.78925 1.19999 1.21000 1.20000 1.19628 0.93197 0.82419 1.47680 0.88126 1.41884 1.09253 1.04592 1.63812 1.19798 0.88058 0.84754 0.83668 1.90404 1.13759 1.87386 1.56611 1.21670 0.97229 0.93880 1.00478 0.90331 1.23228 0.99681 0.96231 1.00351 1.21104 0.96650 0.95062 0.99199 1.23296 0.99729 0.96252 1.01281 1.22003 0.98669 0.96123 0.99648 1.20693 0.90740 0.93442 0.86970 0.89529 1.47830 1.07396 1.70001 1.05262 1.22096 0.79770 1.00676 0.98980 1.22570 0.97451 1.02555 0.94091 1.22296 0.95156 1.03224 0.98536 1.20479 0.89306 0.78911 0.84810 1.90321 1.17265 1.45189 1.82736 0.91869 0.77430 0.84185 0.93883 0.94608 0.92995 0.95155 0.84355 0.91858 0.92449 0.92455 0.88507 0.89722 0.90160 0.88679 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 13.05 55.50 0.72 -24.46 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 9 N -0.56 -14.59 5.18 -10.96 -0.06 -14.65 16 10 C 0.45 10.63 6.94 -10.98 -0.08 10.56 16 11 O -0.60 -14.83 12.91 5.55 0.07 -14.76 16 12 C -0.11 -2.10 2.34 -91.77 -0.21 -2.32 16 13 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 14 C -0.16 -3.02 4.64 -26.73 -0.12 -3.15 16 15 C -0.08 -1.37 5.21 -26.73 -0.14 -1.51 16 16 C -0.17 -2.59 5.46 -26.73 -0.15 -2.73 16 17 C -0.13 -1.78 5.63 -26.73 -0.15 -1.93 16 18 C 0.18 3.02 2.44 -67.93 -0.17 2.85 16 19 H 0.09 1.41 8.02 -51.93 -0.42 1.00 16 20 N -0.57 -8.99 1.99 -164.73 -0.33 -9.32 16 21 C 0.11 1.45 6.71 -3.02 -0.02 1.43 16 22 C -0.13 -1.52 7.19 -25.00 -0.18 -1.70 16 23 C -0.15 -1.84 6.86 -26.74 -0.18 -2.02 16 24 C 0.47 7.41 5.94 -10.86 -0.06 7.34 16 25 O -0.47 -8.16 8.28 5.55 0.05 -8.12 16 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.39 10.19 7.33 -40.82 -0.30 9.89 16 28 H 0.14 2.90 3.48 16.86 0.06 2.96 16 29 H 0.04 0.88 7.57 -51.93 -0.39 0.48 16 30 H 0.04 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.14 2.26 3.49 16.88 0.06 2.32 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.55 6.71 -51.93 -0.35 1.20 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -30.13 308.45 -7.12 -37.25 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.50 Total: 14.39 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.71 Total: -1.24 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.34 Total: -48.43 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.12 Total: -22.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.13 -7.12 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.698 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds