Wall clock time and date at job start Tue Mar 31 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86801 * 120.00294 * 2 1 4 4 H 1.48502 * 109.47417 * 240.00257 * 3 2 1 5 5 H 1.48493 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47169 * 120.00243 * 3 2 1 7 7 C 1.38951 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00179 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99865 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99628 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00362 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99701 * 180.27613 * 10 9 7 13 13 H 1.09008 * 109.47120 * 59.72940 * 12 10 9 14 14 C 1.52998 * 109.47364 * 299.73105 * 12 10 9 15 15 C 1.52999 * 109.47118 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.47482 * 59.99589 * 15 14 12 17 17 C 1.52998 * 109.47279 * 300.00312 * 16 15 14 18 18 C 1.52999 * 109.47118 * 59.99465 * 17 16 15 19 19 H 1.09005 * 109.47292 * 179.97438 * 18 17 16 20 20 N 1.46496 * 109.47037 * 60.00372 * 18 17 16 21 21 C 1.46770 * 124.35097 * 119.52095 * 20 18 17 22 22 C 1.54660 * 105.38332 * 162.85354 * 21 20 18 23 23 C 1.54635 * 101.68247 * 25.76772 * 22 21 20 24 24 C 1.34420 * 124.35138 * 299.81825 * 20 18 17 25 25 O 1.21286 * 124.93921 * 0.39496 * 24 20 18 26 26 H 0.96997 * 119.99802 * 359.97438 * 1 2 3 27 27 H 0.96997 * 120.00226 * 0.02562 * 9 7 2 28 28 H 1.09000 * 109.46562 * 299.99463 * 14 12 10 29 29 H 1.08999 * 109.47038 * 59.99770 * 14 12 10 30 30 H 1.09008 * 109.47187 * 299.99725 * 15 14 12 31 31 H 1.08999 * 109.47094 * 179.97438 * 15 14 12 32 32 H 1.08994 * 109.47363 * 180.02562 * 16 15 14 33 33 H 1.09008 * 109.46798 * 59.99898 * 16 15 14 34 34 H 1.09008 * 109.46867 * 300.00100 * 17 16 15 35 35 H 1.08999 * 109.47501 * 180.02562 * 17 16 15 36 36 H 1.08991 * 110.24715 * 281.98682 * 21 20 18 37 37 H 1.09000 * 110.23999 * 43.98941 * 21 20 18 38 38 H 1.09005 * 111.19465 * 267.59651 * 22 21 20 39 39 H 1.08994 * 110.85381 * 143.79244 * 22 21 20 40 40 H 1.08998 * 110.48443 * 216.30527 * 23 22 21 41 41 H 1.09001 * 110.48378 * 93.66747 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0068 13 1 0.6170 -4.9164 -0.8972 14 6 0.3638 -4.9500 1.2419 15 6 -0.4007 -6.2752 1.2358 16 6 0.5939 -7.4379 1.2305 17 6 1.4737 -7.3508 -0.0182 18 6 2.2382 -6.0256 -0.0121 19 1 2.8653 -5.9637 -0.9015 20 7 3.0803 -5.9531 1.1845 21 6 4.5424 -5.8280 1.1619 22 6 4.9356 -5.3527 2.5802 23 6 3.7581 -5.8882 3.4274 24 6 2.6136 -5.9985 2.4443 25 8 1.4449 -6.1113 2.7485 26 1 -0.4850 0.8400 0.0004 27 1 0.3533 -2.3906 -0.0005 28 1 0.9905 -4.8966 2.1321 29 1 -0.3444 -4.1215 1.2458 30 1 -1.0273 -6.3292 0.3454 31 1 -1.0271 -6.3374 2.1256 32 1 0.0493 -8.3819 1.2257 33 1 1.2205 -7.3839 2.1209 34 1 0.8471 -7.4047 -0.9085 35 1 2.1819 -8.1793 -0.0222 36 1 5.0003 -6.7927 0.9440 37 1 4.8462 -5.0893 0.4201 38 1 4.9894 -4.2651 2.6305 39 1 5.8776 -5.8028 2.8930 40 1 3.5107 -5.1861 4.2236 41 1 4.0005 -6.8667 3.8421 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597031139.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:30 Heat of formation + Delta-G solvation = -11.306060 kcal Electronic energy + Delta-G solvation = -24092.812577 eV Core-core repulsion = 20781.966578 eV Total energy + Delta-G solvation = -3310.845999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.77830 -39.95848 -38.03165 -37.41812 -35.89074 -33.41621 -32.85846 -31.82146 -30.06036 -28.25669 -27.07336 -24.35812 -23.74432 -22.87564 -21.35332 -21.06087 -19.95197 -18.90410 -18.42259 -17.83630 -17.46959 -16.91132 -16.57911 -15.89108 -15.69803 -15.56414 -15.11007 -14.67761 -14.28239 -14.18749 -13.78830 -13.63834 -13.45071 -13.24334 -13.12981 -13.04008 -12.88338 -12.59058 -12.43381 -12.26054 -12.14610 -12.07291 -11.64226 -11.47273 -11.29356 -10.95117 -10.73224 -10.08948 -9.99219 -9.65277 -8.81780 -8.45895 -5.94933 1.37779 1.38274 1.50084 1.57586 2.07867 2.27459 2.30116 3.19598 3.22324 3.58405 3.76179 3.83692 4.00669 4.04180 4.17320 4.27610 4.42577 4.47456 4.53675 4.60596 4.63644 4.66849 4.77357 4.84920 4.89002 5.02945 5.08387 5.10133 5.13665 5.36005 5.36959 5.38575 5.45310 5.49657 5.66411 5.90617 5.99152 6.00354 6.43953 6.59049 7.12087 7.33018 7.57957 8.11969 8.71894 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.006242 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.572374 B = 4484.493422 C = 5117.744917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.019 4.019 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.329 4.329 8 H 0.084 0.916 9 N -0.577 5.577 10 C 0.451 3.549 11 O -0.609 6.609 12 C -0.104 4.104 13 H 0.085 0.915 14 C -0.155 4.155 15 C -0.077 4.077 16 C -0.167 4.167 17 C -0.116 4.116 18 C 0.183 3.817 19 H 0.085 0.915 20 N -0.582 5.582 21 C 0.104 3.896 22 C -0.121 4.121 23 C -0.144 4.144 24 C 0.459 3.541 25 O -0.494 6.494 26 H 0.276 0.724 27 H 0.389 0.611 28 H 0.133 0.867 29 H 0.015 0.985 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.136 0.864 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.389 -14.887 3.783 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.218 4.218 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.102 0.898 9 N -0.213 5.213 10 C 0.238 3.762 11 O -0.495 6.495 12 C -0.127 4.127 13 H 0.103 0.897 14 C -0.191 4.191 15 C -0.115 4.115 16 C -0.202 4.202 17 C -0.154 4.154 18 C 0.079 3.921 19 H 0.103 0.897 20 N -0.312 5.312 21 C -0.018 4.018 22 C -0.159 4.159 23 C -0.184 4.184 24 C 0.252 3.748 25 O -0.379 6.379 26 H 0.085 0.915 27 H 0.222 0.778 28 H 0.148 0.852 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.461 -14.773 3.817 16.570 hybrid contribution -0.759 1.455 -0.537 1.726 sum 5.702 -13.318 3.281 14.855 Atomic orbital electron populations 1.69706 1.07127 1.29195 1.50788 1.26115 0.96491 1.02680 0.96519 0.84959 0.77676 0.76480 0.79035 1.19421 1.19821 1.19555 1.19674 0.92726 0.83933 1.49547 0.89803 1.42003 1.09039 1.05015 1.65207 1.20673 0.88222 0.85676 0.81609 1.90395 1.14640 1.87920 1.56569 1.21692 0.97718 0.92438 1.00814 0.89702 1.23231 0.99103 0.96868 0.99936 1.21057 0.96832 0.94280 0.99322 1.23212 0.99477 0.95923 1.01631 1.21937 0.98801 0.95175 0.99526 1.20719 0.90454 0.93339 0.87586 0.89656 1.48017 1.08283 1.69825 1.05104 1.22233 0.78760 1.01712 0.99123 1.22566 0.99270 1.00977 0.93096 1.22331 0.93506 1.05077 0.97493 1.21160 0.89984 0.78197 0.85437 1.90297 1.18367 1.46120 1.83077 0.91497 0.77810 0.85190 0.96590 0.93934 0.93368 0.93625 0.84863 0.90836 0.90137 0.88808 0.91679 0.92693 0.86143 0.88916 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.70 13.05 21.66 0.28 -52.42 16 2 C -0.02 -1.06 5.50 84.93 0.47 -0.59 16 3 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 8 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.58 -31.25 5.18 -306.97 -1.59 -32.84 16 10 C 0.45 21.89 6.94 87.66 0.61 22.49 16 11 O -0.61 -31.18 12.91 -3.07 -0.04 -31.22 16 12 C -0.10 -4.02 2.34 -11.54 -0.03 -4.05 16 13 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 14 C -0.16 -6.02 4.64 30.59 0.14 -5.88 16 15 C -0.08 -2.51 5.21 30.59 0.16 -2.36 16 16 C -0.17 -4.71 5.46 30.59 0.17 -4.54 16 17 C -0.12 -2.98 5.63 30.59 0.17 -2.81 16 18 C 0.18 5.77 2.44 44.99 0.11 5.88 16 19 H 0.09 2.70 8.02 -2.38 -0.02 2.68 16 20 N -0.58 -17.50 1.99 -793.68 -1.58 -19.08 16 21 C 0.10 2.64 6.71 86.89 0.58 3.22 16 22 C -0.12 -2.62 7.19 31.72 0.23 -2.40 16 23 C -0.14 -3.17 6.86 30.59 0.21 -2.96 16 24 C 0.46 13.83 5.94 87.90 0.52 14.35 16 25 O -0.49 -16.76 8.28 -3.05 -0.03 -16.79 16 26 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.39 21.17 7.33 -92.71 -0.68 20.49 16 28 H 0.13 5.51 3.48 4.86 0.02 5.53 16 29 H 0.02 0.67 7.57 -2.39 -0.02 0.65 16 30 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.14 4.09 3.49 5.01 0.02 4.11 16 34 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 2.08 6.71 -2.39 -0.02 2.06 16 38 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -66.73 308.45 3.65 -63.08 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: 0.42 Total: 41.26 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 4.15 Total: 2.07 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -2.89 Total: -104.34 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.06 Total: -48.01 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.73 3.65 -63.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597031139.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.777 kcal (2) G-P(sol) polarization free energy of solvation -66.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds