Wall clock time and date at job start Tue Mar 31 2020 02:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47121 * 270.00193 * 3 2 1 5 5 H 1.48499 * 109.47234 * 30.00084 * 3 2 1 6 6 H 1.48500 * 109.47093 * 149.99728 * 3 2 1 7 7 C 1.37875 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99634 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00391 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47186 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47041 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00012 * 179.97438 * 12 11 10 14 14 O 1.21351 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.49450 * 120.00035 * 179.97438 * 13 12 11 16 16 O 1.21351 * 120.00082 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99971 * 180.02562 * 15 13 12 18 18 C 1.46500 * 119.99948 * 180.02562 * 17 15 13 19 19 C 1.50700 * 109.47224 * 180.02562 * 18 17 15 20 20 C 1.30525 * 124.44870 * 94.97856 * 19 18 17 21 21 C 1.51101 * 111.10317 * 180.26748 * 20 19 18 22 22 C 1.54803 * 104.64610 * 343.19479 * 21 20 19 23 23 C 1.51099 * 124.44623 * 274.99750 * 19 18 17 24 24 H 0.96996 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47301 * 59.99923 * 9 7 2 26 26 H 1.09008 * 109.47245 * 300.00029 * 9 7 2 27 27 H 1.08991 * 109.47089 * 59.99656 * 10 9 7 28 28 H 1.09004 * 109.46361 * 299.99927 * 10 9 7 29 29 H 1.09003 * 109.47105 * 59.99605 * 11 10 9 30 30 H 1.08999 * 109.46661 * 299.99842 * 11 10 9 31 31 H 0.97003 * 119.99523 * 359.97438 * 12 11 10 32 32 H 0.96994 * 119.99977 * 0.02562 * 17 15 13 33 33 H 1.09003 * 109.47247 * 60.00117 * 18 17 15 34 34 H 1.08999 * 109.47322 * 300.00266 * 18 17 15 35 35 H 1.08002 * 124.44516 * 359.97438 * 20 19 18 36 36 H 1.08996 * 110.39014 * 102.12741 * 21 20 19 37 37 H 1.08993 * 110.38575 * 224.50514 * 21 20 19 38 38 H 1.09005 * 111.24700 * 266.87567 * 22 21 20 39 39 H 1.08994 * 110.89817 * 142.88949 * 22 21 20 40 40 H 1.08999 * 110.39225 * 315.23024 * 23 19 18 41 41 H 1.09001 * 110.38605 * 77.49232 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 7 2.4325 -6.1006 0.0037 13 6 1.9833 -7.3712 0.0047 14 8 0.7902 -7.5930 0.0048 15 6 2.9545 -8.5072 0.0045 16 8 4.1476 -8.2854 0.0039 17 7 2.5052 -9.7779 0.0050 18 6 3.4573 -10.8914 0.0054 19 6 2.7038 -12.1965 0.0053 20 6 2.4159 -12.8827 -1.0670 21 6 1.6489 -14.1376 -0.7203 22 6 1.8810 -14.3312 0.7980 23 6 2.1822 -12.8823 1.2465 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8920 27 1 2.8721 -3.6035 0.8926 28 1 2.8720 -3.6050 -0.8874 29 1 0.8540 -5.0454 -0.8869 30 1 0.8535 -5.0443 0.8931 31 1 3.3862 -5.9233 0.0032 32 1 1.5516 -9.9551 0.0051 33 1 4.0840 -10.8333 0.8953 34 1 4.0839 -10.8339 -0.8846 35 1 2.6860 -12.5895 -2.0708 36 1 0.5878 -14.0044 -0.9308 37 1 2.0430 -14.9889 -1.2751 38 1 2.7329 -14.9844 0.9872 39 1 0.9825 -14.7123 1.2831 40 1 2.9398 -12.8771 2.0301 41 1 1.2723 -12.3943 1.5959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597257730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:25 Heat of formation + Delta-G solvation = -77.404012 kcal Electronic energy + Delta-G solvation = -20469.911234 eV Core-core repulsion = 17156.199013 eV Total energy + Delta-G solvation = -3313.712221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64380 -39.25375 -38.34784 -35.81422 -34.89497 -33.31342 -31.24452 -30.56539 -28.85870 -27.34986 -26.02943 -24.00522 -22.37517 -21.32722 -20.77755 -20.26763 -18.96002 -18.02879 -16.95484 -16.36903 -16.15695 -16.03821 -15.82353 -15.33324 -14.95488 -14.63735 -14.42961 -13.99829 -13.69032 -13.23450 -13.15474 -12.31386 -12.29925 -12.15507 -11.89331 -11.79913 -11.72239 -11.69166 -11.59095 -11.51715 -10.91440 -10.76139 -10.60637 -9.90315 -9.84782 -9.48802 -9.45317 -9.22040 -9.11656 -8.97896 -8.38043 -6.02834 -4.05823 1.42232 1.47877 2.53482 3.22975 3.31084 3.37439 3.40618 3.75138 4.04792 4.10788 4.43678 4.52040 4.59330 4.61946 4.89990 4.99659 5.20221 5.29311 5.33093 5.34178 5.41180 5.48389 5.58210 5.59463 5.69201 5.76774 5.95145 6.03854 6.08054 6.27183 6.38345 6.54084 6.69316 6.92550 6.95141 7.40705 7.61541 7.72131 7.73199 7.95531 8.05345 8.36822 9.00681 9.58504 11.08423 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.055946 B = 0.002162 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.365626 B =12945.877580 C =13209.071673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.527 6.527 15 C 0.508 3.492 16 O -0.521 6.521 17 N -0.700 5.700 18 C 0.168 3.832 19 C -0.162 4.162 20 C -0.133 4.133 21 C -0.104 4.104 22 C -0.125 4.125 23 C -0.093 4.093 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.411 0.589 32 H 0.414 0.586 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 -28.624 0.118 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.404 6.404 15 C 0.289 3.711 16 O -0.397 6.397 17 N -0.354 5.354 18 C 0.045 3.955 19 C -0.162 4.162 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.162 4.162 23 C -0.130 4.130 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.247 0.753 32 H 0.250 0.750 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.567 -28.479 0.137 28.843 hybrid contribution 0.436 0.985 -0.072 1.080 sum 5.002 -27.494 0.065 27.945 Atomic orbital electron populations 1.69964 1.06051 1.26715 1.50571 1.25033 0.94876 0.99339 0.95252 0.86565 0.79808 0.83350 0.78104 1.20656 1.21212 1.19868 1.21201 0.93060 0.90883 1.50936 0.92562 1.19036 0.93803 0.90789 0.97717 1.21930 0.99880 0.92948 1.01325 1.21848 0.91741 0.84719 1.02537 1.46069 1.12235 1.04979 1.70996 1.19993 0.88440 0.84507 0.79057 1.90760 1.16008 1.84707 1.48879 1.20373 0.88800 0.84363 0.77600 1.90764 1.16234 1.84764 1.47891 1.45810 1.11671 1.04475 1.73407 1.20041 0.90608 0.81483 1.03328 1.21986 1.01365 0.96437 0.96450 1.23361 0.97043 0.96465 0.98319 1.21436 1.00188 0.96197 0.96252 1.22476 1.01943 0.96439 0.95374 1.21303 1.01069 0.94705 0.95954 0.92921 0.96192 0.96193 0.92408 0.92424 0.91091 0.91080 0.75296 0.74989 0.90227 0.90276 0.85496 0.90162 0.90884 0.90964 0.90770 0.90929 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.57 9.11 -34.45 -0.31 -14.88 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.11 1.96 5.67 -4.04 -0.02 1.93 16 12 N -0.69 -10.44 5.55 -60.73 -0.34 -10.77 16 13 C 0.50 7.53 7.89 -11.59 -0.09 7.44 16 14 O -0.53 -9.00 16.48 5.50 0.09 -8.91 16 15 C 0.51 6.72 7.89 -11.58 -0.09 6.63 16 16 O -0.52 -7.84 16.48 5.50 0.09 -7.75 16 17 N -0.70 -7.24 5.54 -61.91 -0.34 -7.58 16 18 C 0.17 1.43 6.10 -5.19 -0.03 1.39 16 19 C -0.16 -1.14 5.53 -100.74 -0.56 -1.70 16 20 C -0.13 -0.85 10.58 -35.70 -0.38 -1.23 16 21 C -0.10 -0.55 6.82 -26.74 -0.18 -0.73 16 22 C -0.12 -0.63 7.20 -24.92 -0.18 -0.81 16 23 C -0.09 -0.57 6.76 -26.83 -0.18 -0.76 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.41 5.67 7.94 -40.82 -0.32 5.34 16 32 H 0.41 3.99 7.94 -40.82 -0.32 3.67 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -31.80 351.40 -8.42 -40.22 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.53 Total: 2.20 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.41 Total: -3.25 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.06 Total: -44.32 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.18 Total: -16.66 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.80 -8.42 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.184 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds