Wall clock time and date at job start Tue Mar 31 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47121 * 270.00193 * 3 2 1 5 5 H 1.48499 * 109.47234 * 30.00084 * 3 2 1 6 6 H 1.48500 * 109.47093 * 149.99728 * 3 2 1 7 7 C 1.37875 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99634 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00391 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47186 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47041 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00012 * 179.97438 * 12 11 10 14 14 O 1.21351 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.49450 * 120.00035 * 179.97438 * 13 12 11 16 16 O 1.21351 * 120.00082 * 0.02562 * 15 13 12 17 17 N 1.34779 * 119.99971 * 180.02562 * 15 13 12 18 18 C 1.46500 * 119.99948 * 180.02562 * 17 15 13 19 19 C 1.50700 * 109.47224 * 180.02562 * 18 17 15 20 20 C 1.30525 * 124.44870 * 94.97856 * 19 18 17 21 21 C 1.51101 * 111.10317 * 180.26748 * 20 19 18 22 22 C 1.54803 * 104.64610 * 343.19479 * 21 20 19 23 23 C 1.51099 * 124.44623 * 274.99750 * 19 18 17 24 24 H 0.96996 * 120.00179 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.47301 * 59.99923 * 9 7 2 26 26 H 1.09008 * 109.47245 * 300.00029 * 9 7 2 27 27 H 1.08991 * 109.47089 * 59.99656 * 10 9 7 28 28 H 1.09004 * 109.46361 * 299.99927 * 10 9 7 29 29 H 1.09003 * 109.47105 * 59.99605 * 11 10 9 30 30 H 1.08999 * 109.46661 * 299.99842 * 11 10 9 31 31 H 0.97003 * 119.99523 * 359.97438 * 12 11 10 32 32 H 0.96994 * 119.99977 * 0.02562 * 17 15 13 33 33 H 1.09003 * 109.47247 * 60.00117 * 18 17 15 34 34 H 1.08999 * 109.47322 * 300.00266 * 18 17 15 35 35 H 1.08002 * 124.44516 * 359.97438 * 20 19 18 36 36 H 1.08996 * 110.39014 * 102.12741 * 21 20 19 37 37 H 1.08993 * 110.38575 * 224.50514 * 21 20 19 38 38 H 1.09005 * 111.24700 * 266.87567 * 22 21 20 39 39 H 1.08994 * 110.89817 * 142.88949 * 22 21 20 40 40 H 1.08999 * 110.39225 * 315.23024 * 23 19 18 41 41 H 1.09001 * 110.38605 * 77.49232 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 7 2.4325 -6.1006 0.0037 13 6 1.9833 -7.3712 0.0047 14 8 0.7902 -7.5930 0.0048 15 6 2.9545 -8.5072 0.0045 16 8 4.1476 -8.2854 0.0039 17 7 2.5052 -9.7779 0.0050 18 6 3.4573 -10.8914 0.0054 19 6 2.7038 -12.1965 0.0053 20 6 2.4159 -12.8827 -1.0670 21 6 1.6489 -14.1376 -0.7203 22 6 1.8810 -14.3312 0.7980 23 6 2.1822 -12.8823 1.2465 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8920 27 1 2.8721 -3.6035 0.8926 28 1 2.8720 -3.6050 -0.8874 29 1 0.8540 -5.0454 -0.8869 30 1 0.8535 -5.0443 0.8931 31 1 3.3862 -5.9233 0.0032 32 1 1.5516 -9.9551 0.0051 33 1 4.0840 -10.8333 0.8953 34 1 4.0839 -10.8339 -0.8846 35 1 2.6860 -12.5895 -2.0708 36 1 0.5878 -14.0044 -0.9308 37 1 2.0430 -14.9889 -1.2751 38 1 2.7329 -14.9844 0.9872 39 1 0.9825 -14.7123 1.2831 40 1 2.9398 -12.8771 2.0301 41 1 1.2723 -12.3943 1.5959 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597257730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:24 Heat of formation + Delta-G solvation = -98.718206 kcal Electronic energy + Delta-G solvation = -20470.835487 eV Core-core repulsion = 17156.199013 eV Total energy + Delta-G solvation = -3314.636474 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75677 -40.00378 -39.30502 -37.21562 -35.95380 -35.13646 -33.04623 -31.21691 -29.34497 -28.97507 -27.03856 -25.43397 -23.76799 -22.37283 -21.75780 -21.42350 -19.98497 -18.79149 -18.48679 -17.98026 -17.26274 -16.85695 -16.64410 -16.43238 -16.31721 -16.12956 -15.55739 -15.19602 -14.82144 -14.27240 -14.23512 -13.78227 -13.58151 -13.51644 -12.94821 -12.82401 -12.76026 -12.60260 -12.54720 -12.40409 -12.21316 -12.04144 -11.93456 -11.70176 -11.56385 -11.23970 -10.79164 -10.54777 -10.39765 -10.28735 -9.77873 -8.19483 -6.30367 0.28168 0.83521 1.42062 1.43059 1.52867 1.54965 2.08113 2.41865 2.70779 3.14331 3.40772 3.52528 3.63685 4.07960 4.13351 4.17953 4.21260 4.35572 4.45994 4.52311 4.57731 4.85023 4.85749 4.87227 4.91362 5.00041 5.02256 5.08294 5.14820 5.19986 5.22301 5.37400 5.51536 5.54069 5.70658 5.84435 5.85395 5.87959 6.22751 6.30514 6.66932 6.86541 6.88364 7.38924 8.92374 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.055946 B = 0.002162 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.365626 B =12945.877580 C =13209.071673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.502 3.498 14 O -0.548 6.548 15 C 0.514 3.486 16 O -0.540 6.540 17 N -0.684 5.684 18 C 0.168 3.832 19 C -0.174 4.174 20 C -0.128 4.128 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.096 4.096 24 H 0.263 0.737 25 H -0.004 1.004 26 H -0.004 1.004 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.420 0.580 32 H 0.418 0.582 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.946 -29.649 0.005 30.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.338 5.338 13 C 0.282 3.718 14 O -0.427 6.427 15 C 0.294 3.706 16 O -0.418 6.418 17 N -0.337 5.337 18 C 0.046 3.954 19 C -0.174 4.174 20 C -0.147 4.147 21 C -0.142 4.142 22 C -0.160 4.160 23 C -0.133 4.133 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.257 0.743 32 H 0.255 0.745 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.816 -29.546 0.023 30.113 hybrid contribution 0.012 1.218 -0.056 1.219 sum 5.828 -28.328 -0.033 28.922 Atomic orbital electron populations 1.70099 1.07792 1.27780 1.51646 1.25995 0.95780 1.03438 0.94826 0.85432 0.78659 0.78428 0.78424 1.19864 1.20950 1.18651 1.21679 0.93718 0.92122 1.50483 0.91760 1.18939 0.94356 0.92591 0.95435 1.21644 0.98633 0.91869 1.02248 1.21485 0.91593 0.84518 1.02011 1.45881 1.12289 1.04635 1.70995 1.20320 0.88483 0.84805 0.78160 1.90751 1.17063 1.85049 1.49799 1.19954 0.87965 0.84638 0.78010 1.90762 1.16605 1.84998 1.49407 1.45849 1.12343 1.03978 1.71547 1.20148 0.90411 0.81411 1.03408 1.21925 1.02262 0.96028 0.97213 1.23593 0.96086 0.96633 0.98406 1.21490 1.00262 0.95953 0.96510 1.22492 1.02540 0.95743 0.95245 1.21336 1.00909 0.95368 0.95661 0.92794 0.98521 0.98522 0.91436 0.91429 0.91712 0.91704 0.74304 0.74476 0.90186 0.90117 0.84986 0.89763 0.89829 0.90504 0.89963 0.90848 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.11 -4.08 5.27 30.60 0.16 -3.92 16 11 C 0.13 4.34 5.67 86.38 0.49 4.83 16 12 N -0.69 -20.11 5.55 -464.41 -2.58 -22.69 16 13 C 0.50 14.73 7.89 87.27 0.69 15.42 16 14 O -0.55 -18.47 16.48 -3.25 -0.05 -18.52 16 15 C 0.51 13.09 7.89 87.27 0.69 13.78 16 16 O -0.54 -15.66 16.48 -3.25 -0.05 -15.71 16 17 N -0.68 -13.39 5.54 -468.13 -2.59 -15.99 16 18 C 0.17 2.65 6.10 85.63 0.52 3.17 16 19 C -0.17 -2.20 5.53 -15.87 -0.09 -2.29 16 20 C -0.13 -1.42 10.58 26.26 0.28 -1.14 16 21 C -0.11 -0.90 6.82 30.59 0.21 -0.69 16 22 C -0.12 -1.02 7.20 31.77 0.23 -0.79 16 23 C -0.10 -1.05 6.76 30.53 0.21 -0.85 16 24 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 26 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.42 11.02 7.94 -92.71 -0.74 10.28 16 32 H 0.42 7.61 7.94 -92.71 -0.74 6.88 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 35 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.08 0.57 8.14 -2.38 -0.02 0.56 16 39 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.27 351.40 0.82 -66.45 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -0.44 Total: 17.54 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 4.23 Total: -0.77 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -4.89 Total: -94.96 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.11 Total: -34.23 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -67.27 0.82 -66.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.267 kcal (2) G-P(sol) polarization free energy of solvation -67.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds