Wall clock time and date at job start Tue Mar 31 2020 02:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48493 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46981 * 300.00065 * 3 2 1 6 6 H 1.48502 * 109.47034 * 59.99568 * 3 2 1 7 7 C 1.38953 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00275 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00032 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99711 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00125 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.46982 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00127 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99785 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00163 * 180.02562 * 14 13 12 17 17 C 1.52951 * 109.41251 * 180.02562 * 16 14 13 18 18 C 1.53179 * 109.44734 * 176.90938 * 17 16 14 19 19 C 1.53147 * 108.88655 * 56.56620 * 18 17 16 20 20 C 1.52841 * 117.67569 * 91.49469 * 19 18 17 21 21 C 1.52806 * 117.74825 * 160.37823 * 19 18 17 22 22 C 1.53147 * 115.00654 * 306.06267 * 19 18 17 23 23 C 1.52934 * 109.41196 * 59.64924 * 16 14 13 24 24 H 0.97003 * 119.99649 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99865 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.46871 * 60.00155 * 12 10 9 27 27 H 1.09002 * 109.47178 * 300.00425 * 12 10 9 28 28 H 0.97003 * 120.00549 * 0.02562 * 13 12 10 29 29 H 1.09005 * 109.35412 * 299.82213 * 16 14 13 30 30 H 1.08998 * 109.47971 * 56.90627 * 17 16 14 31 31 H 1.09004 * 109.46635 * 296.89817 * 17 16 14 32 32 H 1.09001 * 109.56649 * 296.74231 * 18 17 16 33 33 H 1.08999 * 109.56825 * 176.39267 * 18 17 16 34 34 H 1.09002 * 117.50783 * 0.27023 * 20 19 18 35 35 H 1.09008 * 117.50386 * 215.22396 * 20 19 18 36 36 H 1.09001 * 117.50504 * 144.89350 * 21 19 18 37 37 H 1.09001 * 117.52712 * 359.83898 * 21 19 18 38 38 H 1.08996 * 109.57213 * 173.75440 * 22 19 18 39 39 H 1.08998 * 109.56916 * 294.11313 * 22 19 18 40 40 H 1.09005 * 109.47136 * 303.08157 * 23 16 14 41 41 H 1.08995 * 109.47675 * 63.09462 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1956 -5.9764 0.0004 14 6 1.7464 -7.2471 0.0013 15 8 0.5540 -7.4687 0.0022 16 6 2.7257 -8.3926 0.0011 17 6 1.9595 -9.7164 0.0015 18 6 2.9523 -10.8803 -0.0765 19 6 3.9373 -10.7708 1.0911 20 6 3.5871 -11.5028 2.3863 21 6 4.7109 -12.0269 1.4894 22 6 4.6563 -9.4236 1.2073 23 6 3.6108 -8.3048 1.2451 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9208 -0.8886 27 1 0.6173 -4.9204 0.8913 28 1 3.1493 -5.7993 0.0000 29 1 3.3485 -8.3352 -0.8916 30 1 1.2915 -9.7501 -0.8591 31 1 1.3755 -9.7978 0.9183 32 1 3.4971 -10.8328 -1.0194 33 1 2.4129 -11.8252 -0.0118 34 1 2.6556 -12.0685 2.4088 35 1 3.8722 -11.0285 3.3255 36 1 5.7353 -11.8976 1.8386 37 1 4.5190 -12.9378 0.9224 38 1 5.2467 -9.4027 2.1233 39 1 5.3100 -9.2832 0.3465 40 1 4.1135 -7.3378 1.2659 41 1 2.9949 -8.4134 2.1378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597650785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:38 Heat of formation + Delta-G solvation = -77.325864 kcal Electronic energy + Delta-G solvation = -21553.649058 eV Core-core repulsion = 18239.940226 eV Total energy + Delta-G solvation = -3313.708832 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27553 -38.91722 -38.04084 -34.78798 -34.46563 -33.67107 -31.39592 -31.07325 -28.84486 -27.02758 -24.52139 -23.00409 -22.79792 -21.97511 -19.92181 -19.55662 -18.82266 -18.11782 -17.19609 -15.85277 -15.57943 -15.44509 -15.32522 -14.96423 -14.52799 -14.16189 -13.95776 -13.71526 -13.66131 -13.35014 -12.77922 -12.47425 -12.27704 -12.09984 -11.99682 -11.85793 -11.71872 -11.63931 -11.21581 -11.14913 -10.88693 -10.41801 -10.33594 -10.30686 -10.22700 -9.86940 -9.65701 -9.47490 -8.76569 -8.63908 -8.11091 -6.52501 -3.94501 2.85829 3.09549 3.21451 3.27442 3.39295 3.56754 3.73267 4.10808 4.34362 4.47968 4.63062 4.70756 4.85005 4.87665 4.94162 5.04622 5.15951 5.16181 5.31617 5.32915 5.41906 5.58231 5.64193 5.67626 5.73543 5.80281 5.87827 5.91125 5.94348 5.96411 6.02551 6.04857 6.07948 6.23472 6.29132 6.71083 7.45291 7.84233 7.91492 8.43391 8.49562 9.03736 9.38508 9.86266 10.64494 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041549 B = 0.002889 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.737655 B = 9690.123466 C =10122.160138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.514 3.486 15 O -0.551 6.551 16 C -0.103 4.103 17 C -0.094 4.094 18 C -0.081 4.081 19 C -0.122 4.122 20 C -0.175 4.175 21 C -0.178 4.178 22 C -0.079 4.079 23 C -0.110 4.110 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.410 0.590 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.923 -19.892 1.696 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.185 5.185 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.300 3.700 15 O -0.429 6.429 16 C -0.124 4.124 17 C -0.132 4.132 18 C -0.118 4.118 19 C -0.122 4.122 20 C -0.211 4.211 21 C -0.215 4.215 22 C -0.116 4.116 23 C -0.147 4.147 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.248 0.752 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.731 -19.833 1.696 20.714 hybrid contribution 0.158 1.028 0.031 1.040 sum 5.889 -18.806 1.727 19.782 Atomic orbital electron populations 1.69628 1.06022 1.28425 1.49423 1.25336 0.95671 0.99958 0.96815 0.85755 0.79679 0.80807 0.77835 1.19124 1.20603 1.20608 1.19779 0.93480 0.81993 1.48121 0.87626 1.41815 1.09492 1.04508 1.62636 1.19762 0.88294 0.85014 0.85521 1.90492 1.13718 1.86849 1.57363 1.20948 0.91994 0.85911 1.03151 1.45763 1.11510 1.04727 1.74129 1.20630 0.89611 0.83809 0.75993 1.90671 1.16942 1.84949 1.50309 1.21275 0.96696 0.93734 1.00680 1.21307 0.96948 0.91538 1.03447 1.21174 0.95674 0.98389 0.96588 1.21532 1.00895 0.93079 0.96727 1.23019 0.99637 1.03899 0.94594 1.22984 0.96876 0.97613 1.04032 1.21136 0.96700 0.91638 1.02164 1.21527 0.97040 0.99116 0.97062 0.91634 0.77041 0.89940 0.89938 0.75158 0.88582 0.91045 0.91162 0.91410 0.91626 0.88945 0.88932 0.88967 0.89005 0.91476 0.91146 0.90859 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.93 13.05 55.50 0.72 -23.21 16 2 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.66 5.29 -10.96 -0.06 -13.72 16 10 C 0.43 9.83 7.85 -10.99 -0.09 9.74 16 11 O -0.60 -15.23 15.24 5.55 0.08 -15.14 16 12 C 0.11 2.00 6.15 -5.20 -0.03 1.97 16 13 N -0.71 -11.73 5.40 -61.48 -0.33 -12.06 16 14 C 0.51 8.01 7.15 -10.98 -0.08 7.93 16 15 O -0.55 -10.32 15.95 5.56 0.09 -10.23 16 16 C -0.10 -1.18 2.44 -91.83 -0.22 -1.41 16 17 C -0.09 -1.03 4.52 -26.66 -0.12 -1.15 16 18 C -0.08 -0.70 5.67 -26.56 -0.15 -0.85 16 19 C -0.12 -1.04 1.97 -154.54 -0.31 -1.34 16 20 C -0.17 -1.41 9.93 -26.79 -0.27 -1.68 16 21 C -0.18 -1.33 9.99 -26.81 -0.27 -1.60 16 22 C -0.08 -0.68 5.67 -26.56 -0.15 -0.84 16 23 C -0.11 -1.14 5.13 -26.67 -0.14 -1.28 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.40 9.48 7.90 -40.82 -0.32 9.15 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.41 6.65 6.79 -40.82 -0.28 6.37 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.83 8.01 -51.93 -0.42 0.41 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -30.55 338.83 -7.87 -38.42 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -6.40 Total: 13.69 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.06 Total: 1.66 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.33 Total: -48.99 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.17 Total: -25.37 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.55 -7.87 -38.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.906 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds