Wall clock time and date at job start Tue Mar 31 2020 02:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86799 * 120.00240 * 2 1 4 4 H 1.48493 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46981 * 300.00065 * 3 2 1 6 6 H 1.48502 * 109.47034 * 59.99568 * 3 2 1 7 7 C 1.38953 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00275 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99722 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00032 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99711 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00125 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.46982 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00127 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99785 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00163 * 180.02562 * 14 13 12 17 17 C 1.52951 * 109.41251 * 180.02562 * 16 14 13 18 18 C 1.53179 * 109.44734 * 176.90938 * 17 16 14 19 19 C 1.53147 * 108.88655 * 56.56620 * 18 17 16 20 20 C 1.52841 * 117.67569 * 91.49469 * 19 18 17 21 21 C 1.52806 * 117.74825 * 160.37823 * 19 18 17 22 22 C 1.53147 * 115.00654 * 306.06267 * 19 18 17 23 23 C 1.52934 * 109.41196 * 59.64924 * 16 14 13 24 24 H 0.97003 * 119.99649 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99865 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.46871 * 60.00155 * 12 10 9 27 27 H 1.09002 * 109.47178 * 300.00425 * 12 10 9 28 28 H 0.97003 * 120.00549 * 0.02562 * 13 12 10 29 29 H 1.09005 * 109.35412 * 299.82213 * 16 14 13 30 30 H 1.08998 * 109.47971 * 56.90627 * 17 16 14 31 31 H 1.09004 * 109.46635 * 296.89817 * 17 16 14 32 32 H 1.09001 * 109.56649 * 296.74231 * 18 17 16 33 33 H 1.08999 * 109.56825 * 176.39267 * 18 17 16 34 34 H 1.09002 * 117.50783 * 0.27023 * 20 19 18 35 35 H 1.09008 * 117.50386 * 215.22396 * 20 19 18 36 36 H 1.09001 * 117.50504 * 144.89350 * 21 19 18 37 37 H 1.09001 * 117.52712 * 359.83898 * 21 19 18 38 38 H 1.08996 * 109.57213 * 173.75440 * 22 19 18 39 39 H 1.08998 * 109.56916 * 294.11313 * 22 19 18 40 40 H 1.09005 * 109.47136 * 303.08157 * 23 16 14 41 41 H 1.08995 * 109.47675 * 63.09462 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1956 -5.9764 0.0004 14 6 1.7464 -7.2471 0.0013 15 8 0.5540 -7.4687 0.0022 16 6 2.7257 -8.3926 0.0011 17 6 1.9595 -9.7164 0.0015 18 6 2.9523 -10.8803 -0.0765 19 6 3.9373 -10.7708 1.0911 20 6 3.5871 -11.5028 2.3863 21 6 4.7109 -12.0269 1.4894 22 6 4.6563 -9.4236 1.2073 23 6 3.6108 -8.3048 1.2451 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9208 -0.8886 27 1 0.6173 -4.9204 0.8913 28 1 3.1493 -5.7993 0.0000 29 1 3.3485 -8.3352 -0.8916 30 1 1.2915 -9.7501 -0.8591 31 1 1.3755 -9.7978 0.9183 32 1 3.4971 -10.8328 -1.0194 33 1 2.4129 -11.8252 -0.0118 34 1 2.6556 -12.0685 2.4088 35 1 3.8722 -11.0285 3.3255 36 1 5.7353 -11.8976 1.8386 37 1 4.5190 -12.9378 0.9224 38 1 5.2467 -9.4027 2.1233 39 1 5.3100 -9.2832 0.3465 40 1 4.1135 -7.3378 1.2659 41 1 2.9949 -8.4134 2.1378 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597650785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:38 Heat of formation + Delta-G solvation = -96.847689 kcal Electronic energy + Delta-G solvation = -21554.495588 eV Core-core repulsion = 18239.940226 eV Total energy + Delta-G solvation = -3314.555362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40877 -40.26328 -39.45906 -36.27094 -35.65833 -35.29763 -33.38572 -31.86687 -30.04360 -28.33302 -26.35140 -23.77901 -23.55972 -22.84936 -21.39155 -21.06690 -20.08061 -19.55705 -18.58344 -17.37038 -16.95155 -16.75451 -16.43838 -16.18833 -16.03637 -15.74055 -15.31051 -15.00856 -14.55473 -14.36885 -13.98190 -13.82959 -13.56485 -13.36977 -13.24128 -13.02088 -12.91952 -12.73897 -12.45763 -12.32042 -12.11561 -11.95960 -11.74703 -11.59047 -11.08520 -11.05021 -10.72011 -10.57345 -10.39574 -10.19699 -10.08996 -8.52367 -6.02654 1.34299 1.42413 1.56561 1.59511 1.89518 2.04720 2.31935 2.91691 3.11574 3.14802 3.60681 3.67457 3.81582 3.98277 4.08338 4.13818 4.20129 4.24511 4.38392 4.40772 4.41266 4.47654 4.56355 4.84960 4.86161 4.92663 4.98585 5.03382 5.11664 5.13264 5.23046 5.27003 5.29909 5.34342 5.37676 5.47623 5.50829 5.90694 6.44773 6.54047 7.02221 7.17825 7.43000 7.92692 8.64856 Molecular weight = 280.16amu Principal moments of inertia in cm(-1) A = 0.041549 B = 0.002889 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.737655 B = 9690.123466 C =10122.160138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.119 3.881 13 N -0.708 5.708 14 C 0.513 3.487 15 O -0.583 6.583 16 C -0.095 4.095 17 C -0.091 4.091 18 C -0.074 4.074 19 C -0.133 4.133 20 C -0.182 4.182 21 C -0.166 4.166 22 C -0.075 4.075 23 C -0.106 4.106 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.414 0.586 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -20.679 1.567 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.511 6.511 12 C -0.009 4.009 13 N -0.361 5.361 14 C 0.302 3.698 15 O -0.463 6.463 16 C -0.116 4.116 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.219 4.219 21 C -0.203 4.203 22 C -0.112 4.112 23 C -0.144 4.144 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.252 0.748 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.735 -20.643 1.569 21.770 hybrid contribution -0.180 1.216 0.082 1.232 sum 6.556 -19.426 1.651 20.569 Atomic orbital electron populations 1.69693 1.07048 1.29590 1.49396 1.26151 0.96542 1.02745 0.95785 0.84801 0.78154 0.76656 0.78313 1.19348 1.19620 1.19642 1.19777 0.92964 0.83510 1.50271 0.89527 1.41869 1.09588 1.04671 1.63445 1.20412 0.88130 0.85884 0.83522 1.90468 1.15097 1.87533 1.57983 1.20769 0.91898 0.84220 1.03988 1.45802 1.11278 1.04654 1.74411 1.21370 0.89877 0.84048 0.74537 1.90656 1.18626 1.85304 1.51716 1.21328 0.96041 0.92083 1.02123 1.21265 0.97247 0.92135 1.02227 1.21132 0.95244 0.97537 0.97264 1.21545 1.01410 0.93499 0.96814 1.23071 1.00160 1.04147 0.94567 1.23040 0.96949 0.97157 1.03137 1.21116 0.96179 0.90905 1.03006 1.21498 0.97123 0.99901 0.95864 0.91066 0.76754 0.89001 0.89101 0.74800 0.86697 0.91990 0.92704 0.90366 0.90800 0.88952 0.88994 0.88233 0.88154 0.90757 0.90187 0.91171 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.86 13.05 21.67 0.28 -48.57 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 41.69 29.55 68.60 2.03 43.72 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.51 9.68 84.04 0.81 -17.70 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.24 5.29 -306.99 -1.62 -29.86 16 10 C 0.43 20.03 7.85 87.66 0.69 20.72 16 11 O -0.62 -32.01 15.24 -3.06 -0.05 -32.06 16 12 C 0.12 4.40 6.15 85.63 0.53 4.93 16 13 N -0.71 -23.11 5.40 -466.80 -2.52 -25.63 16 14 C 0.51 15.75 7.15 87.66 0.63 16.37 16 15 O -0.58 -21.76 15.95 -3.03 -0.05 -21.81 16 16 C -0.09 -2.08 2.44 -11.58 -0.03 -2.11 16 17 C -0.09 -1.89 4.52 30.64 0.14 -1.75 16 18 C -0.07 -1.14 5.67 30.70 0.17 -0.96 16 19 C -0.13 -1.96 1.97 -52.20 -0.10 -2.07 16 20 C -0.18 -2.64 9.93 30.55 0.30 -2.34 16 21 C -0.17 -2.05 9.99 30.54 0.31 -1.74 16 22 C -0.07 -1.14 5.67 30.70 0.17 -0.96 16 23 C -0.11 -2.08 5.13 30.63 0.16 -1.92 16 24 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 25 H 0.40 19.36 7.90 -92.70 -0.73 18.62 16 26 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 28 H 0.41 13.18 6.79 -92.71 -0.63 12.55 16 29 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.06 1.40 8.01 -2.39 -0.02 1.38 16 31 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.42 7.45 -2.38 -0.02 1.40 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -64.71 338.83 1.99 -62.72 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.32 Total: 41.17 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 4.24 Total: 10.33 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.86 Total: -104.07 kcal Atomic # 8 Polarization: -53.78 SS G_CDS: -0.09 Total: -53.87 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.71 1.99 -62.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597650785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.130 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds